![[Jenkins]](/jenkins/static/b864b239/images/svgs/logo.svg){kind=logo}
Started by upstream project "BIOFORMATS-test-repo" build number 43 originally caused by: Started by upstream project "Trigger" build number 50 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8 [BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins2648675042214082346.sh + '[' olympus-oir = slidebook ']' ++ date +%u + '[' 3 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_6052_merge_ci -v /uod/idr/repos/curated/olympus-oir:/data -v /uod/idr-scratch/merge-ci/curated/olympus-oir:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 01:20:54,457 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:20:54,459 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - No custom configurators were discovered as a service. [testng] 01:20:54,459 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:20:54,460 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:20:54,460 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:20:54,461 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:20:54,461 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:20:54,461 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:20:54,461 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:20:54,462 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:20:54,462 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:20:54,463 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:20:54,657 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:20:54,657 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:20:54,680 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:20:54,680 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:20:54,686 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:20:54,686 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:20:54,686 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:20:54,687 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:20:54,687 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@576d5deb - End of configuration. [testng] 01:20:54,687 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6fdbe764 - Registering current configuration as safe fallback point [testng] 01:20:54,687 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 226 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-04-24 01:20:54,697] [main] java.version = 17.0.2 [testng] 01:20:54,700 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:20:54,701 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:20:54,744 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-04-24_01-20-54.log] [testng] 01:20:54,746 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37313c65 - End of configuration. [testng] [2024-04-24 01:20:54,748] [main] testng.directory = /data [testng] [2024-04-24 01:20:54,748] [main] testng.configDirectory = /config [testng] [2024-04-24 01:20:54,757] [main] testng.multiplier = 1.0 [testng] [2024-04-24 01:20:54,758] [main] testng.in-memory = false [testng] [2024-04-24 01:20:54,758] [main] testng.allow-missing = false [testng] [2024-04-24 01:20:54,758] [main] user.language = en [testng] [2024-04-24 01:20:54,758] [main] user.country = ${user.country} [testng] [2024-04-24 01:20:54,758] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-04-24 01:21:10,770] [main] ---------------------------------------- [testng] [2024-04-24 01:21:10,770] [main] Total files: 283 [testng] [2024-04-24 01:21:10,770] [main] Scan time: 16.012 s (56 ms/file) [testng] [2024-04-24 01:21:10,770] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 186 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-04-24 01:29:10,704] [pool-1-thread-1] Initializing /data/olympus/Clipboard-calcium sparks_XYt.tif: [testng] 01:29:10,704 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:29:10,704 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:29:10,705 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-04-24_01-29-10.log] [testng] 01:29:10,705 |-INFO in ch.qos.logback.core.sift.SiftProcessor@12c1f64b - End of configuration. [testng] [2024-04-24 01:29:10,747] [pool-1-thread-12] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001.ome.tif: [testng] 01:29:10,747 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:29:10,748 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:29:10,749 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-04-24_01-29-10.log] [testng] 01:29:10,749 |-INFO in ch.qos.logback.core.sift.SiftProcessor@16e8b38a - End of configuration. [testng] [2024-04-24 01:29:10,832] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Image_0064_0001.ome.tif: [testng] 01:29:10,832 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:29:10,832 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:29:10,833 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-04-24_01-29-10.log] [testng] 01:29:10,833 |-INFO in ch.qos.logback.core.sift.SiftProcessor@56c2be84 - End of configuration. [testng] [2024-04-24 01:29:10,919] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Image_0050_0001.oir: [testng] 01:29:10,920 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:29:10,920 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:29:10,920 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-04-24_01-29-10.log] [testng] 01:29:10,921 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4da77c66 - End of configuration. [testng] [2024-04-24 01:29:10,994] [pool-1-thread-9] Initializing /data/olympus/2017-04-21/SampleImagesWS/Caged Glu-3 point.ome.tif: [testng] 01:29:10,994 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:29:10,995 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:29:10,995 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-04-24_01-29-10.log] [testng] 01:29:10,996 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4d51d4c9 - End of configuration. [testng] [2024-04-24 01:29:11,065] [pool-1-thread-8] Initializing /data/qa-17270/image1.oir: [testng] 01:29:11,066 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:29:11,066 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:29:11,066 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-04-24_01-29-11.log] [testng] 01:29:11,067 |-INFO in ch.qos.logback.core.sift.SiftProcessor@62e48ca7 - End of configuration. [testng] [2024-04-24 01:29:11,135] [pool-1-thread-7] Initializing /data/qa-17919/f10187.oir: [testng] 01:29:11,135 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:29:11,135 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:29:11,136 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-04-24_01-29-11.log] [testng] 01:29:11,136 |-INFO in ch.qos.logback.core.sift.SiftProcessor@b07d247 - End of configuration. [testng] [2024-04-24 01:29:26,705] [pool-1-thread-6] Initializing /data/qa-16881/Clipboard-P10D1 20150729_0019.tif: [testng] 01:29:26,705 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:29:26,705 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:29:26,706 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-04-24_01-29-26.log] [testng] 01:29:26,707 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7c4b851f - End of configuration. [testng] [2024-04-24 01:29:26,748] [pool-1-thread-5] Initializing /data/olympus/_stitched 4x4 zstack 10X_XYZ_/stack1/frame_t_0.ets: [testng] 01:29:26,748 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:29:26,748 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:29:26,749 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-04-24_01-29-26.log] [testng] 01:29:26,750 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7a1ba32e - End of configuration. [testng] [2024-04-24 01:29:26,770] [pool-1-thread-4] Initializing /data/olympus/2017-04-21/SampleImagesWS/PA-GFPv-2.ome.tif: [testng] 01:29:26,772 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:29:26,772 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:29:26,773 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-04-24_01-29-26.log] [testng] 01:29:26,773 |-INFO in ch.qos.logback.core.sift.SiftProcessor@29891d9a - End of configuration. [testng] [2024-04-24 01:29:26,854] [pool-1-thread-3] Initializing /data/public/etienne/Clipboard-amy slice z stack_0001.tif: [testng] 01:29:26,854 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:29:26,854 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:29:26,855 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-04-24_01-29-26.log] [testng] 01:29:26,855 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6b0acaa7 - End of configuration. [testng] [2024-04-24 01:29:26,897] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Clipboard-Image_0106_0001.tif: [testng] 01:29:26,898 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:29:26,898 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:29:26,899 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-04-24_01-29-26.log] [testng] 01:29:26,899 |-INFO in ch.qos.logback.core.sift.SiftProcessor@17a69ffc - End of configuration. [testng] [2024-04-24 01:29:29,291] [pool-1-thread-11] Initializing /data/qa-17222/ps245 red tubulin green 60x.oir: [testng] [2024-04-24 01:29:29,455] [pool-1-thread-8] Initializing /data/qa-16881/P10D1 20150729_0019.oir: [testng] [2024-04-24 01:29:29,611] [pool-1-thread-10] Initializing /data/olympus/2017-04-21/SampleImagesWS/LILY POLLEN.oir: [testng] [2024-04-24 01:29:30,000] [pool-1-thread-9] Initializing /data/qa-16881/W11-180 D3 20151021_0006.ome.tif: [testng] [2024-04-24 01:29:30,066] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Clipboard-Image_0033_0001.tif: [testng] [2024-04-24 01:29:30,105] [pool-1-thread-1] Initializing /data/olympus/40X_4CH_XY.vsi: [testng] [2024-04-24 01:29:30,131] [pool-1-thread-2] Initializing /data/qa-17331/60x zstack RS.ome.tif: [testng] [2024-04-24 01:29:30,213] [pool-1-thread-6] Initializing /data/qa-17270/Clipboard-alexa488.tif: [testng] [2024-04-24 01:29:30,319] [pool-1-thread-4] Initializing /data/qa-17270/stack1.oir: [testng] [2024-04-24 01:29:31,705] [pool-1-thread-12] Initializing /data/olympus/2021-04-20/20x_MATL_Cycle/Stitch_A01_G001.oir: [testng] [2024-04-24 01:29:31,829] [pool-1-thread-5] Initializing /data/olympus/XYZt.vsi: [testng] [2024-04-24 01:29:33,290] [pool-1-thread-5] Initializing /data/public/etienne/Clipboard-coupe shg stack_0001.tif: [testng] [2024-04-24 01:29:33,338] [pool-1-thread-9] Initializing /data/olympus/40X_4CH_XY.oir: [testng] [2024-04-24 01:29:33,466] [pool-1-thread-3] Initializing /data/qa-16881/P10-50 D2_0006.ome.tif: [testng] [2024-04-24 01:29:33,554] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Image_0079_0001.ome.tif: [testng] [2024-04-24 01:29:33,664] [pool-1-thread-2] Initializing /data/qa-16881/P10D1 20150729.ome.tif: [testng] [2024-04-24 01:29:33,788] [pool-1-thread-8] Initializing /data/martin/20170824_JupGFP_HisRFP_wL3_30xSI_4xzoom_0p5z_A01_G001_0001.oir: [testng] [2024-04-24 01:30:19,239] [pool-1-thread-11] Initializing /data/public/etienne/Clipboard-venus stack.tif: [testng] [2024-04-24 01:30:19,409] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Clipboard-Image_0099_0001.tif: [testng] [2024-04-24 01:30:19,969] [pool-1-thread-6] Initializing /data/qa-16881/Clipboard-P10-50 D2_0006.tif: [testng] [2024-04-24 01:30:20,490] [pool-1-thread-5] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/Stitch_A01_G001_0001.oir: [testng] [2024-04-24 01:30:20,588] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Clipboard-Image_0064_0001.tif: [testng] [2024-04-24 01:30:20,826] [pool-1-thread-10] Initializing /data/qa-17335/stimulation_0001_LSM.ome.tif: [testng] [2024-04-24 01:30:20,933] [pool-1-thread-11] Initializing /data/qa-17335/Clipboard-stimulation_0001_LSM.tif: [testng] [2024-04-24 01:30:20,980] [pool-1-thread-1] Initializing /data/olympus/2021-07-19/2021-07-19 15_37_09-Original Metadata - FRAP_0006_LSM.oir.png: [testng] [2024-04-24 01:30:20,983] [pool-1-thread-2] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-LILY POLLEN.tif: [testng] [2024-04-24 01:30:21,259] [pool-1-thread-1] Initializing /data/cudmore/20190401__0005.oir: [testng] [2024-04-24 01:30:25,469] [pool-1-thread-6] Initializing /data/public/etienne/venus stack.oir: [testng] [2024-04-24 01:30:25,870] [pool-1-thread-9] Initializing /data/qa-21508/Stitch_A01_G008.oir: [testng] [2024-04-24 01:30:26,495] [pool-1-thread-3] Initializing /data/olympus/stitched 4x4 zstack 10X_XYZ.ome.tif: [testng] [2024-04-24 01:30:26,742] [pool-1-thread-10] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001.oir: [testng] [2024-04-24 01:30:27,081] [pool-1-thread-2] Initializing /data/olympus/2017-04-21/Clipboard.tif: [testng] [2024-04-24 01:30:27,158] [pool-1-thread-11] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/image_Cycle_02.oir: [testng] [2024-04-24 01:30:28,576] [pool-1-thread-2] Initializing /data/qa-16881/W4-45 D5 New 20150816_0011.oir: [testng] [2024-04-24 01:30:29,287] [pool-1-thread-6] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-CagedATP Cag10.tif: [testng] [2024-04-24 01:30:29,343] [pool-1-thread-10] Initializing /data/qa-17270/alexa488.oir: [testng] [2024-04-24 01:30:29,638] [pool-1-thread-11] Initializing /data/qa-17331/60x zstack RS.oir: [testng] [2024-04-24 01:30:30,293] [pool-1-thread-2] Initializing /data/qa-17335/OSR-Z.oir: [testng] [2024-04-24 01:30:30,411] [pool-1-thread-4] Initializing /data/qa-21577/R13L-S2-5_X20_ZOOM1_Z.oir: [testng] [2024-04-24 01:30:31,002] [pool-1-thread-6] Initializing /data/olympus/2017-04-21/SampleImagesWS/CagedATP CaG10.oir: [testng] [2024-04-24 01:30:31,416] [pool-1-thread-10] Initializing /data/qa-16881/W4-0 D14 New 20150828_0007.oir: [testng] [2024-04-24 01:30:31,561] [pool-1-thread-3] Initializing /data/qa-17335/stimulation_0001_LSM.oir: [testng] [2024-04-24 01:30:32,026] [pool-1-thread-11] Initializing /data/qa-17270/image1.ome.tif: [testng] [2024-04-24 01:30:32,086] [pool-1-thread-5] Initializing /data/qa-17293/2-z-t_0001_LSM.ome.tif: [testng] [2024-04-24 01:30:32,298] [pool-1-thread-2] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x.tif: [testng] [2024-04-24 01:30:33,015] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Image_0058_0001.ome.tif: [testng] [2024-04-24 01:30:33,180] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Image_0001_0001.oir: [testng] [2024-04-24 01:30:33,288] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Clipboard-Image_0001_0001.tif: [testng] [2024-04-24 01:30:33,534] [pool-1-thread-11] Initializing /data/qa-17270/stack1.ome.tif: [testng] [2024-04-24 01:30:33,660] [pool-1-thread-5] Initializing /data/qa-17335/Clipboard-OSR-Z.tif: [testng] [2024-04-24 01:30:33,724] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Image_0058_0001.oir: [testng] [2024-04-24 01:30:34,000] [pool-1-thread-3] Initializing /data/olympus/2017-04-21/SampleImagesWS/CagedATP CaG10.ome.tif: [testng] [2024-04-24 01:30:34,389] [pool-1-thread-10] Initializing /data/qa-16881/P10D1 20150729_0024.oir: [testng] [2024-04-24 01:30:34,689] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Image_0033_0001.oir: [testng] [2024-04-24 01:30:34,928] [pool-1-thread-2] Initializing /data/qa-16881/W11-180 D3 20151021_0006.oir: [testng] [2024-04-24 01:30:35,073] [pool-1-thread-4] Initializing /data/qa-17917/f10010.oir: [testng] [2024-04-24 01:30:59,414] [pool-1-thread-6] Initializing /data/public/etienne/amy slice z stack_0001.ome.tif: [testng] [2024-04-24 01:30:59,685] [pool-1-thread-5] Initializing /data/qa-16881/W1-75 D11 New 20150825_0004.oir: [testng] [2024-04-24 01:31:00,068] [pool-1-thread-11] Initializing /data/qa-16881/W11-180 D3 20151021_0024.oir: [testng] [2024-04-24 01:31:00,464] [pool-1-thread-12] Initializing /data/qa-17270/Clipboard-stack1.tif: [testng] [2024-04-24 01:31:00,526] [pool-1-thread-3] Initializing /data/qa-18802/20171020_JupGFPHisRFP_L3_30xSI_galvo_p5z_p1xy_better_than_nyquist.oir: [testng] [2024-04-24 01:31:01,825] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Image_0064_0001.oir: [testng] [2024-04-24 01:31:02,092] [pool-1-thread-2] Initializing /data/public/etienne/coupe shg stack_0001.ome.tif: [testng] [2024-04-24 01:31:02,202] [pool-1-thread-11] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x_0001.tif: [testng] [2024-04-24 01:31:02,378] [pool-1-thread-6] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-Caged Glu-3 point.tif: [testng] [2024-04-24 01:31:02,428] [pool-1-thread-5] Initializing /data/olympus/Stitched_XYZ.oir: [testng] [2024-04-24 01:31:03,023] [pool-1-thread-12] Initializing /data/olympus/Stitched_XYZ.ome.tif: [testng] [2024-04-24 01:31:03,496] [pool-1-thread-10] Initializing /data/qa-16871/XY_0003.oir: [testng] [2024-04-24 01:31:03,732] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Image_0106_0001.oir: [testng] [2024-04-24 01:31:03,908] [pool-1-thread-6] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002_5ADVMLE.oir.vsi: [testng] [2024-04-24 01:31:04,026] [pool-1-thread-2] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001_5ADVMLE.oir.vsi: [testng] [2024-04-24 01:31:04,049] [pool-1-thread-9] Initializing /data/qa-16881/Clipboard-P10D1 20150729.tif: [testng] [2024-04-24 01:31:04,485] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Image_0106_0001.ome.tif: [testng] [2024-04-24 01:31:04,555] [pool-1-thread-11] Initializing /data/qa-16881/P10-50 D2.oir: [testng] [2024-04-24 01:31:04,719] [pool-1-thread-10] Initializing /data/qa-17409/Stitch_A01_G001.oir: [testng] [2024-04-24 01:31:05,617] [pool-1-thread-5] Initializing /data/qa-16881/W11-180 D3 20151021_0024.ome.tif: [testng] [2024-04-24 01:31:05,842] [pool-1-thread-9] Initializing /data/qa-16881/Clipboard-W4-0 D14 New 20150828_0007.tif: [testng] [2024-04-24 01:31:06,046] [pool-1-thread-2] Initializing /data/olympus/2017-04-20/mito_0006_0001.ome.tif: [testng] [2024-04-24 01:31:06,207] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Image_0043_0001.oir: [testng] [2024-04-24 01:31:06,461] [pool-1-thread-11] Initializing /data/olympus/Clipboard-stitched 4x4 zstack 10X_XYZ.tif: [testng] [2024-04-24 01:31:06,997] [pool-1-thread-12] Initializing /data/qa-17293/Clipboard.tif: [testng] [2024-04-24 01:31:07,090] [pool-1-thread-6] Initializing /data/qa-17335/1.oir: [testng] [2024-04-24 01:31:07,271] [pool-1-thread-2] Initializing /data/olympus/XYZt.ome.tif: [testng] [2024-04-24 01:31:07,505] [pool-1-thread-5] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Clipboard-Image_0091_0001.tif: [testng] [2024-04-24 01:31:07,620] [pool-1-thread-9] Initializing /data/qa-17293/2-z-t_0001_LSM.oir: [testng] [2024-04-24 01:31:07,879] [pool-1-thread-11] Initializing /data/olympus/XYZt.oir: [testng] [2024-04-24 01:31:09,235] [pool-1-thread-6] Initializing /data/qa-16881/W1-135 D6 New 20150818_0010.ome.tif: [testng] [2024-04-24 01:31:09,618] [pool-1-thread-9] Initializing /data/qa-16871/XY_0003.ome.tif: [testng] [2024-04-24 01:31:09,681] [pool-1-thread-12] Initializing /data/public/etienne/venus stack.ome.tif: [testng] [2024-04-24 01:31:10,044] [pool-1-thread-5] Initializing /data/qa-17270/Clipboard-image1.tif: [testng] [2024-04-24 01:31:10,600] [pool-1-thread-10] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002.oir: [testng] [2024-04-24 01:31:10,806] [pool-1-thread-9] Initializing /data/qa-17922/example_multipart.oir: [testng] [2024-04-24 01:31:30,437] [pool-1-thread-6] Initializing /data/olympus/2017-11-20/stimulation_exp/stimulation_exp.oir: [testng] [2024-04-24 01:31:33,830] [pool-1-thread-3] Initializing /data/olympus/_calcium sparks_XYt_/stack1/frame_t_0.ets: [testng] [2024-04-24 01:31:33,956] [pool-1-thread-5] Initializing /data/qa-17222/ps245 red tubulin green 60x.ome.tif: [testng] [2024-04-24 01:31:34,073] [pool-1-thread-12] Initializing /data/olympus/Clipboard-Stitched_XYZ.tif: [testng] [2024-04-24 01:31:34,218] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Image_0079_0001.oir: [testng] [2024-04-24 01:31:34,857] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Image_0055_0001.ome.tif: [testng] [2024-04-24 01:31:35,099] [pool-1-thread-3] Initializing /data/public/etienne/amy slice z stack_0001.oir: [testng] [2024-04-24 01:31:35,253] [pool-1-thread-2] Initializing /data/qa-16881/P10-50 D2_0006.oir: [testng] [2024-04-24 01:31:35,546] [pool-1-thread-10] Initializing /data/qa-16881/W4-0 D14 New 20150828_0007.ome.tif: [testng] [2024-04-24 01:31:35,744] [pool-1-thread-12] Initializing /data/olympus/calcium sparks_XYt.oir: [testng] [2024-04-24 01:31:36,671] [pool-1-thread-5] Initializing /data/qa-16881/Clipboard-P10-50 D2.tif: [testng] [2024-04-24 01:31:36,888] [pool-1-thread-2] Initializing /data/olympus/2021-03-23/Dataset02_incl_stitched_image/Stitch_A01_G001.oir: [testng] [2024-04-24 01:31:36,959] [pool-1-thread-1] Initializing /data/qa-17331/Clipboard.tif: [testng] [2024-04-24 01:31:37,145] [pool-1-thread-3] Initializing /data/qa-16881/Clipboard-W1-135 D6 New 20150818_0010.tif: [testng] [2024-04-24 01:31:37,372] [pool-1-thread-10] Initializing /data/olympus/spectral_scan_XYL.oir: [testng] [2024-04-24 01:31:37,765] [pool-1-thread-11] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-PA-GFPv-2.tif: [testng] [2024-04-24 01:31:38,174] [pool-1-thread-5] Initializing /data/olympus/2017-04-21/SampleImagesWS/PA-GFPv-2.oir: [testng] [2024-04-24 01:31:38,912] [pool-1-thread-1] Initializing /data/olympus/Clipboard-XYZt.tif: [testng] [2024-04-24 01:31:39,113] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Clipboard-Image_0058_0001.tif: [testng] [2024-04-24 01:31:39,177] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Image_0099_0001.ome.tif: [testng] [2024-04-24 01:31:39,361] [pool-1-thread-11] Initializing /data/olympus/2017-04-21/SampleImagesWS/Caged Glu-3 point.oir: [testng] [2024-04-24 01:31:40,382] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Clipboard-Image_0055_0001.tif: [testng] [2024-04-24 01:31:40,447] [pool-1-thread-12] Initializing /data/qa-17222/ps245 red tubulin green 60x-1.oir.vsi: [testng] [2024-04-24 01:31:40,657] [pool-1-thread-3] Initializing /data/qa-17335/OSR-Z.ome.tif: [testng] [2024-04-24 01:31:40,815] [pool-1-thread-10] Initializing /data/olympus/spectral_scan_XYL.ome.tif: [testng] [2024-04-24 01:31:41,598] [pool-1-thread-1] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002.ome.tif: [testng] [2024-04-24 01:31:41,784] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Image_0033_0001.ome.tif: [testng] [2024-04-24 01:31:42,031] [pool-1-thread-3] Initializing /data/qa-16881/Clipboard-P10-50 D2_0019.tif: [testng] [2024-04-24 01:31:42,147] [pool-1-thread-12] Initializing /data/olympus/2017-04-20/Clipboard.tif: [testng] [2024-04-24 01:31:42,221] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Image_0091_0001.oir: [testng] [2024-04-24 01:31:42,512] [pool-1-thread-5] Initializing /data/qa-16881/Clipboard-P10D1 20150729_0024.tif: [testng] [2024-04-24 01:31:42,770] [pool-1-thread-2] Initializing /data/olympus/2017-04-21/SampleImagesWS/LILY POLLEN.ome.tif: [testng] [2024-04-24 01:31:42,992] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Clipboard-Image_0079_0001.tif: [testng] [2024-04-24 01:31:43,292] [pool-1-thread-12] Initializing /data/olympus/2021-04-20/overview 2 x_Cycle_01/matl.omp2info: [testng] [2024-04-24 01:31:43,439] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Image_0055_0001.oir: [testng] [2024-04-24 01:31:43,816] [pool-1-thread-5] Initializing /data/olympus/2017-04-20/mito_0006_0001.oir: [testng] [2024-04-24 01:31:43,898] [pool-1-thread-10] Initializing /data/qa-16881/P10D1 20150729.oir: [testng] [2024-04-24 01:31:44,073] [pool-1-thread-1] Initializing /data/qa-21577/R13L-S2-5_X20_ZOOM1_Z_CONTROL.oir: [testng] [2024-04-24 01:31:44,543] [pool-1-thread-11] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/matl.omp2info: [testng] [2024-04-24 01:31:47,345] [pool-1-thread-3] Initializing /data/qa-16881/P10D1 20150729_0019.ome.tif: [testng] [2024-04-24 01:31:47,421] [pool-1-thread-5] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Image_0001_0001.ome.tif: [testng] [2024-04-24 01:31:47,605] [pool-1-thread-2] Initializing /data/qa-17335/1.ome.tif: [testng] [2024-04-24 01:31:47,772] [pool-1-thread-12] Initializing /data/olympus/calcium sparks.jpg: [testng] [2024-04-24 01:31:47,877] [pool-1-thread-10] Initializing /data/qa-16881/Clipboard-W1-75 D11 New 20150825_0004.tif: [testng] [2024-04-24 01:31:48,695] [pool-1-thread-1] Initializing /data/qa-16881/W1-75 D11 New 20150825_0004.ome.tif: [testng] [2024-04-24 01:31:48,870] [pool-1-thread-5] Initializing /data/gh-3779/10kDa.P19.ZDC.7xConcentrationAlexProtocol.HomogenizedDex.oir: [testng] [2024-04-24 01:31:49,361] [pool-1-thread-2] Initializing /data/public/etienne/coupe shg stack_0001.oir: [testng] [2024-04-24 01:31:49,597] [pool-1-thread-3] Initializing /data/qa-17409/Stitch_A01_G001-exported.ome.tif: [testng] [2024-04-24 01:31:49,706] [pool-1-thread-10] Initializing /data/qa-16871/Clipboard.tif: [testng] [2024-04-24 01:31:50,278] [pool-1-thread-12] Initializing /data/qa-16881/P10-50 D2_0019.ome.tif: [testng] [2024-04-24 01:31:50,758] [pool-1-thread-1] Initializing /data/olympus/2017-11-20/fish_overview/fish-overview-night.oir: [testng] [2024-04-24 01:31:54,912] [pool-1-thread-10] Initializing /data/qa-17335/Clipboard-1.tif: [testng] [2024-04-24 01:31:55,420] [pool-1-thread-2] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x_0002.tif: [testng] [2024-04-24 01:31:55,853] [pool-1-thread-12] Initializing /data/samples/channel-reorder/Stitched_XYZ-modified.oir: [testng] [2024-04-24 01:31:56,296] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Clipboard-Image_0043_0001.tif: [testng] [2024-04-24 01:31:56,681] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Image_0091_0001.ome.tif: [testng] [2024-04-24 01:31:56,998] [pool-1-thread-5] Initializing /data/qa-16881/Clipboard-W4-45 D5 New 20150816_0011.tif: [testng] [2024-04-24 01:31:57,559] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Image_0099_0001.oir: [testng] [2024-04-24 01:31:57,862] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Clipboard-Image_0050_0001.tif: [testng] [2024-04-24 01:31:58,168] [pool-1-thread-3] Initializing /data/olympus/2017-11-20/xytz_golgi/xytz_golgi.oir: [testng] [2024-04-24 01:31:59,179] [pool-1-thread-5] Initializing /data/qa-16881/P10D1 20150729_0024.ome.tif: [testng] [2024-04-24 01:31:59,269] [pool-1-thread-12] Initializing /data/qa-17409/Clipboard.tif: [testng] [2024-04-24 01:31:59,524] [pool-1-thread-10] Initializing /data/olympus/Clipboard-40X_4CH_XY.tif: [testng] [2024-04-24 01:31:59,985] [pool-1-thread-2] Initializing /data/olympus/2017-04-21/zebra shg.oir: [testng] [2024-04-24 01:32:02,443] [pool-1-thread-12] Initializing /data/qa-16881/P10-50 D2.ome.tif: [testng] [2024-04-24 01:32:02,980] [pool-1-thread-10] Initializing /data/qa-16881/W1-135 D6 New 20150818_0010.oir: [testng] [2024-04-24 01:32:03,277] [pool-1-thread-5] Initializing /data/olympus/calcium sparks_XYt.ome.tif: [testng] [2024-04-24 01:32:04,470] [pool-1-thread-12] Initializing /data/qa-16881/Clipboard-W11-180 D3 20151021_0024.tif: [testng] [2024-04-24 01:32:04,843] [pool-1-thread-10] Initializing /data/olympus/2021-03-23/Dataset02_incl_stitched_image/matl.omp2info: [testng] [2024-04-24 01:32:07,392] [pool-1-thread-6] Initializing /data/olympus/2021-04-20/20x_MATL_Cycle/matl.omp2info: [testng] [2024-04-24 01:32:09,767] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Image_0043_0001.ome.tif: [testng] [2024-04-24 01:32:09,869] [pool-1-thread-5] Initializing /data/qa-17270/alexa488.ome.tif: [testng] [2024-04-24 01:32:10,944] [pool-1-thread-12] Initializing /data/olympus/Clipboard-spectral_scan_XYL.tif: [testng] [2024-04-24 01:32:12,010] [pool-1-thread-5] Initializing /data/olympus/stitched 4x4 zstack 10X_XYZ.oir: [testng] [2024-04-24 01:32:12,338] [pool-1-thread-3] Initializing /data/qa-16881/P10-50 D2_0019.oir: [testng] [2024-04-24 01:32:12,529] [pool-1-thread-12] Initializing /data/qa-17222/ps245 red tubulin green 60x_5ADVMLE-1.oir.vsi: [testng] [2024-04-24 01:32:14,141] [pool-1-thread-3] Initializing /data/olympus/40X_4CH_XY.ome.tif: [testng] [2024-04-24 01:32:14,500] [pool-1-thread-12] Initializing /data/olympus/Stitched_XYZ.vsi: [testng] [2024-04-24 01:32:15,212] [pool-1-thread-5] Initializing /data/qa-16881/W4-45 D5 New 20150816_0011.ome.tif: [testng] [2024-04-24 01:32:16,174] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Image_0050_0001.ome.tif: [testng] [2024-04-24 01:32:16,995] [pool-1-thread-5] Initializing /data/olympus/2021-07-19/FRAP_0006_LSM.oir: [testng] [2024-04-24 01:32:17,891] [pool-1-thread-12] Initializing /data/qa-16881/Clipboard-W11-180 D3 20151021_0006.tif: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 9858, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 39 minutes 34 seconds Finished: SUCCESS