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Started by upstream project "BIOFORMATS-test-repo" build number 383 originally caused by: Started by upstream project "Trigger" build number 405 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins7345704083176678715.sh + '[' hitachi = slidebook ']' ++ date +%u + '[' 3 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_60533_merge_ci -v /uod/idr/repos/curated/hitachi:/data -v /uod/idr-scratch/merge-ci/curated/hitachi:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 00:33:54,420 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 00:33:54,421 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - No custom configurators were discovered as a service. [testng] 00:33:54,421 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:33:54,422 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:33:54,422 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:33:54,423 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:33:54,423 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:33:54,423 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:33:54,423 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:33:54,424 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:33:54,424 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:33:54,424 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:33:54,583 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:33:54,583 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:33:54,604 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:33:54,604 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:33:54,609 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:33:54,609 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:33:54,609 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:33:54,609 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:33:54,609 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@3f6f6701 - End of configuration. [testng] 00:33:54,610 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@4f80542f - Registering current configuration as safe fallback point [testng] 00:33:54,610 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 187 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-03-19 00:33:54,618] [main] java.version = 17.0.2 [testng] 00:33:54,621 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:33:54,621 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:33:54,660 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-19_00-33-54.log] [testng] 00:33:54,661 |-INFO in ch.qos.logback.core.sift.SiftProcessor@14bdbc74 - End of configuration. [testng] [2025-03-19 00:33:54,664] [main] testng.directory = /data [testng] [2025-03-19 00:33:54,664] [main] testng.configDirectory = /config [testng] [2025-03-19 00:33:54,672] [main] testng.multiplier = 1.0 [testng] [2025-03-19 00:33:54,673] [main] testng.in-memory = false [testng] [2025-03-19 00:33:54,673] [main] testng.allow-missing = false [testng] [2025-03-19 00:33:54,673] [main] user.language = en [testng] [2025-03-19 00:33:54,673] [main] user.country = ${user.country} [testng] [2025-03-19 00:33:54,673] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2025-03-19 00:34:38,762] [main] ---------------------------------------- [testng] [2025-03-19 00:34:38,762] [main] Total files: 21 [testng] [2025-03-19 00:34:38,763] [main] Scan time: 44.089 s (2099 ms/file) [testng] [2025-03-19 00:34:38,763] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 18 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-03-19 00:35:46,883] [pool-1-thread-1] Initializing /data/stefan/001_q06.txt: [testng] 00:35:46,884 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:35:46,884 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:35:46,885 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-19_00-35-46.log] [testng] 00:35:46,885 |-INFO in ch.qos.logback.core.sift.SiftProcessor@448fc297 - End of configuration. [testng] [2025-03-19 00:35:48,927] [pool-1-thread-12] Initializing /data/stefan/001_q07.txt: [testng] 00:35:48,927 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:35:48,927 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:35:48,928 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-19_00-35-48.log] [testng] 00:35:48,928 |-INFO in ch.qos.logback.core.sift.SiftProcessor@33622859 - End of configuration. [testng] [2025-03-19 00:35:53,032] [pool-1-thread-11] Initializing /data/stefan/001_q18.txt: [testng] 00:35:53,033 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:35:53,033 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:35:53,033 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-19_00-35-53.log] [testng] 00:35:53,034 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2732151b - End of configuration. [testng] [2025-03-19 00:35:55,060] [pool-1-thread-10] Initializing /data/stefan/001_q09.txt: [testng] 00:35:55,060 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:35:55,060 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:35:55,061 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-19_00-35-55.log] [testng] 00:35:55,061 |-INFO in ch.qos.logback.core.sift.SiftProcessor@26dbe939 - End of configuration. [testng] [2025-03-19 00:36:00,399] [pool-1-thread-9] Initializing /data/stefan/001_q08.txt: [testng] 00:36:00,399 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:36:00,399 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:36:00,400 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-19_00-36-00.log] [testng] 00:36:00,400 |-INFO in ch.qos.logback.core.sift.SiftProcessor@12d88f96 - End of configuration. [testng] [2025-03-19 00:36:05,917] [pool-1-thread-8] Initializing /data/stefan/001_q02.txt: [testng] 00:36:05,917 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:36:05,917 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:36:05,917 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-19_00-36-05.log] [testng] 00:36:05,918 |-INFO in ch.qos.logback.core.sift.SiftProcessor@697c7c48 - End of configuration. [testng] [2025-03-19 00:36:08,577] [pool-1-thread-7] Initializing /data/stefan/001_q01.txt: [testng] 00:36:08,578 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:36:08,578 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:36:08,578 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-19_00-36-08.log] [testng] 00:36:08,579 |-INFO in ch.qos.logback.core.sift.SiftProcessor@68707ea2 - End of configuration. [testng] [2025-03-19 00:36:10,859] [pool-1-thread-6] Initializing /data/stefan/001_q17.txt: [testng] 00:36:10,859 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:36:10,859 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:36:10,860 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-19_00-36-10.log] [testng] 00:36:10,860 |-INFO in ch.qos.logback.core.sift.SiftProcessor@72639505 - End of configuration. [testng] [2025-03-19 00:36:15,029] [pool-1-thread-5] Initializing /data/stefan/001_q14.txt: [testng] 00:36:15,029 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:36:15,029 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:36:15,030 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-19_00-36-15.log] [testng] 00:36:15,030 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2c7461fc - End of configuration. [testng] [2025-03-19 00:36:17,456] [pool-1-thread-4] Initializing /data/stefan/001_q03.txt: [testng] 00:36:17,456 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:36:17,456 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:36:17,457 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-19_00-36-17.log] [testng] 00:36:17,457 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5b7c99e5 - End of configuration. [testng] [2025-03-19 00:36:20,155] [pool-1-thread-3] Initializing /data/stefan/001_q05.txt: [testng] 00:36:20,155 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:36:20,155 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:36:20,156 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-19_00-36-20.log] [testng] 00:36:20,156 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1455eee2 - End of configuration. [testng] [2025-03-19 00:36:23,662] [pool-1-thread-2] Initializing /data/stefan/001_q12.txt: [testng] 00:36:23,663 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:36:23,663 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:36:23,663 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-19_00-36-23.log] [testng] 00:36:23,663 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7b6b6015 - End of configuration. [testng] [2025-03-19 00:36:58,711] [pool-1-thread-4] Initializing /data/stefan/001_q13.txt: [testng] [2025-03-19 00:37:02,606] [pool-1-thread-8] Initializing /data/stefan/001_q15.txt: [testng] [2025-03-19 00:37:05,791] [pool-1-thread-7] Initializing /data/stefan/001_q10.txt: [testng] [2025-03-19 00:37:11,796] [pool-1-thread-5] Initializing /data/stefan/001_q11.txt: [testng] [2025-03-19 00:37:17,841] [pool-1-thread-6] Initializing /data/stefan/001_q04.txt: [testng] [2025-03-19 00:37:20,766] [pool-1-thread-3] Initializing /data/stefan/001_q16.txt: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 954, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 4 minutes 6 seconds Finished: SUCCESS