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Started by upstream project "BIOFORMATS-test-repo" build number 387 originally caused by: Started by upstream project "Trigger" build number 410 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@12 [BIOFORMATS-test-folder@12] $ /bin/bash -xe /tmp/jenkins16516574763686549861.sh + '[' hitachi = slidebook ']' ++ date +%u + '[' 6 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_61173_merge_ci -v /uod/idr/repos/curated/hitachi:/data -v /uod/idr-scratch/merge-ci/curated/hitachi:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 00:26:19,873 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 00:26:19,875 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - No custom configurators were discovered as a service. [testng] 00:26:19,875 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:26:19,876 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:26:19,876 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:26:19,877 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:26:19,877 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:26:19,877 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:26:19,877 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:26:19,878 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:26:19,878 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:26:19,879 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:26:20,067 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:26:20,067 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:26:20,099 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:26:20,099 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:26:20,105 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:26:20,105 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:26:20,105 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:26:20,105 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:26:20,105 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@65c7a252 - End of configuration. [testng] 00:26:20,106 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@38cee291 - Registering current configuration as safe fallback point [testng] 00:26:20,106 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 229 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-03-22 00:26:20,115] [main] java.version = 11.0.16 [testng] 00:26:20,118 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:26:20,118 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:26:20,162 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-22_00-26-20.log] [testng] 00:26:20,163 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13d73f29 - End of configuration. [testng] [2025-03-22 00:26:20,166] [main] testng.directory = /data [testng] [2025-03-22 00:26:20,166] [main] testng.configDirectory = /config [testng] [2025-03-22 00:26:20,176] [main] testng.multiplier = 1.0 [testng] [2025-03-22 00:26:20,178] [main] testng.in-memory = false [testng] [2025-03-22 00:26:20,178] [main] testng.allow-missing = false [testng] [2025-03-22 00:26:20,178] [main] user.language = en [testng] [2025-03-22 00:26:20,178] [main] user.country = ${user.country} [testng] [2025-03-22 00:26:20,178] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2025-03-22 00:26:42,950] [main] ---------------------------------------- [testng] [2025-03-22 00:26:42,950] [main] Total files: 21 [testng] [2025-03-22 00:26:42,951] [main] Scan time: 22.772 s (1084 ms/file) [testng] [2025-03-22 00:26:42,951] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 18 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-03-22 00:27:23,425] [pool-1-thread-1] Initializing /data/stefan/001_q12.txt: [testng] 00:27:23,425 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:27:23,426 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:27:23,427 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-22_00-27-23.log] [testng] 00:27:23,428 |-INFO in ch.qos.logback.core.sift.SiftProcessor@764d3cad - End of configuration. [testng] [2025-03-22 00:27:33,208] [pool-1-thread-12] Initializing /data/stefan/001_q18.txt: [testng] 00:27:33,208 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:27:33,209 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:27:33,211 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-22_00-27-33.log] [testng] 00:27:33,212 |-INFO in ch.qos.logback.core.sift.SiftProcessor@39e075d6 - End of configuration. [testng] [2025-03-22 00:27:37,986] [pool-1-thread-11] Initializing /data/stefan/001_q07.txt: [testng] 00:27:37,987 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:27:37,987 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:27:37,988 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-22_00-27-37.log] [testng] 00:27:37,988 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1096a957 - End of configuration. [testng] [2025-03-22 00:27:45,669] [pool-1-thread-10] Initializing /data/stefan/001_q13.txt: [testng] 00:27:45,669 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:27:45,669 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:27:45,670 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-22_00-27-45.log] [testng] 00:27:45,671 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7c47706b - End of configuration. [testng] [2025-03-22 00:27:49,056] [pool-1-thread-9] Initializing /data/stefan/001_q08.txt: [testng] 00:27:49,057 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:27:49,057 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:27:49,057 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-22_00-27-49.log] [testng] 00:27:49,058 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5d976a8b - End of configuration. [testng] [2025-03-22 00:27:55,203] [pool-1-thread-8] Initializing /data/stefan/001_q01.txt: [testng] 00:27:55,203 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:27:55,203 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:27:55,204 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-22_00-27-55.log] [testng] 00:27:55,204 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3fe97dd7 - End of configuration. [testng] [2025-03-22 00:27:58,552] [pool-1-thread-7] Initializing /data/stefan/001_q09.txt: [testng] 00:27:58,552 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:27:58,552 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:27:58,553 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-22_00-27-58.log] [testng] 00:27:58,553 |-INFO in ch.qos.logback.core.sift.SiftProcessor@632c2dd3 - End of configuration. [testng] [2025-03-22 00:28:04,315] [pool-1-thread-6] Initializing /data/stefan/001_q03.txt: [testng] 00:28:04,316 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:28:04,316 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:28:04,316 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-22_00-28-04.log] [testng] 00:28:04,317 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6d3731a9 - End of configuration. [testng] [2025-03-22 00:28:08,303] [pool-1-thread-5] Initializing /data/stefan/001_q02.txt: [testng] 00:28:08,304 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:28:08,304 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:28:08,304 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-22_00-28-08.log] [testng] 00:28:08,305 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6716dd6e - End of configuration. [testng] [2025-03-22 00:28:12,294] [pool-1-thread-4] Initializing /data/stefan/001_q11.txt: [testng] 00:28:12,295 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:28:12,295 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:28:12,295 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-22_00-28-12.log] [testng] 00:28:12,296 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2ab898dc - End of configuration. [testng] [2025-03-22 00:28:18,999] [pool-1-thread-3] Initializing /data/stefan/001_q15.txt: [testng] 00:28:18,999 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:28:18,999 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:28:19,000 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-22_00-28-19.log] [testng] 00:28:19,000 |-INFO in ch.qos.logback.core.sift.SiftProcessor@feb82a - End of configuration. [testng] [2025-03-22 00:28:22,443] [pool-1-thread-2] Initializing /data/stefan/001_q17.txt: [testng] 00:28:22,444 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:28:22,444 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:28:22,444 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-22_00-28-22.log] [testng] 00:28:22,444 |-INFO in ch.qos.logback.core.sift.SiftProcessor@28209c41 - End of configuration. [testng] [2025-03-22 00:28:59,165] [pool-1-thread-5] Initializing /data/stefan/001_q14.txt: [testng] [2025-03-22 00:29:03,494] [pool-1-thread-8] Initializing /data/stefan/001_q04.txt: [testng] [2025-03-22 00:29:07,014] [pool-1-thread-6] Initializing /data/stefan/001_q16.txt: [testng] [2025-03-22 00:29:10,066] [pool-1-thread-10] Initializing /data/stefan/001_q06.txt: [testng] [2025-03-22 00:29:13,750] [pool-1-thread-2] Initializing /data/stefan/001_q10.txt: [testng] [2025-03-22 00:29:18,447] [pool-1-thread-3] Initializing /data/stefan/001_q05.txt: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 954, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 3 minutes 48 seconds Finished: SUCCESS