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Started by upstream project "BIOFORMATS-test-repo" build number 387 originally caused by: Started by upstream project "Trigger" build number 410 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5 [BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins13055686234161491522.sh + '[' metamorph = slidebook ']' ++ date +%u + '[' 6 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_61242_merge_ci -v /uod/idr/repos/curated/metamorph:/data -v /uod/idr-scratch/merge-ci/curated/metamorph:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 02:14:30,811 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 02:14:30,813 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - No custom configurators were discovered as a service. [testng] 02:14:30,813 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:14:30,814 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:14:30,814 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 02:14:30,815 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 02:14:30,815 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 02:14:30,815 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:14:30,815 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:14:30,816 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 02:14:30,816 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 02:14:30,817 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 02:14:30,981 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:14:30,981 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:14:31,003 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:14:31,003 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:14:31,008 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:14:31,008 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:14:31,008 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:14:31,009 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:14:31,009 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@65c7a252 - End of configuration. [testng] 02:14:31,010 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@38cee291 - Registering current configuration as safe fallback point [testng] 02:14:31,010 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 195 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-03-22 02:14:31,018] [main] java.version = 11.0.16 [testng] 02:14:31,021 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:14:31,021 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:14:31,063 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-22_02-14-31.log] [testng] 02:14:31,066 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13d73f29 - End of configuration. [testng] [2025-03-22 02:14:31,074] [main] testng.directory = /data [testng] [2025-03-22 02:14:31,074] [main] testng.configDirectory = /config [testng] [2025-03-22 02:14:31,086] [main] testng.multiplier = 1.0 [testng] [2025-03-22 02:14:31,087] [main] testng.in-memory = false [testng] [2025-03-22 02:14:31,087] [main] testng.allow-missing = false [testng] [2025-03-22 02:14:31,087] [main] user.language = en [testng] [2025-03-22 02:14:31,088] [main] user.country = ${user.country} [testng] [2025-03-22 02:14:31,088] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2025-03-22 02:45:01,205] [main] ---------------------------------------- [testng] [2025-03-22 02:45:01,205] [main] Total files: 14121 [testng] [2025-03-22 02:45:01,206] [main] Scan time: 1830.117 s (129 ms/file) [testng] [2025-03-22 02:45:01,206] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 261 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-03-22 03:40:46,911] [pool-1-thread-1] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211116_Vec_ISOtoDA_4well/Dish6_w1FRET_s1_t1.TIF: [testng] 03:40:46,912 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 03:40:46,912 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:40:46,914 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-22_03-40-46.log] [testng] 03:40:46,914 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1554d5fe - End of configuration. [testng] [2025-03-22 03:41:10,219] [pool-1-thread-12] Initializing /data/andressa/RPE/Full Confluency/Collagen/120806_2_w1Filter DAPI.TIF: [testng] 03:41:10,219 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 03:41:10,219 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:41:10,219 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-22_03-41-10.log] [testng] 03:41:10,220 |-INFO in ch.qos.logback.core.sift.SiftProcessor@686eb673 - End of configuration. [testng] [2025-03-22 03:41:14,442] [pool-1-thread-11] Initializing /data/josh/2101to600b.stk: [testng] 03:41:14,442 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 03:41:14,442 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:41:14,443 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-22_03-41-14.log] [testng] 03:41:14,443 |-INFO in ch.qos.logback.core.sift.SiftProcessor@27b3ae43 - End of configuration. [testng] [2025-03-22 03:41:44,335] [pool-1-thread-10] Initializing /data/gh-2613/ScanSlide_exp1_rep0_w1confGFP_s1.tif: [testng] 03:41:44,335 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 03:41:44,335 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:41:44,336 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-22_03-41-44.log] [testng] 03:41:44,336 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6e935955 - End of configuration. [testng] [2025-03-22 03:41:49,872] [pool-1-thread-9] Initializing /data/josh/EditedMovies/2101to800.stk: [testng] 03:41:49,872 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 03:41:49,872 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:41:49,873 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-22_03-41-49.log] [testng] 03:41:49,873 |-INFO in ch.qos.logback.core.sift.SiftProcessor@95b59c6 - End of configuration. [testng] [2025-03-22 03:42:04,906] [pool-1-thread-8] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment3_w1CFP-YFP FRET 446.TIF: [testng] 03:42:04,907 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 03:42:04,907 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:42:04,907 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-22_03-42-04.log] [testng] 03:42:04,908 |-INFO in ch.qos.logback.core.sift.SiftProcessor@19080b61 - End of configuration. [testng] [2025-03-22 03:42:08,535] [pool-1-thread-7] Initializing /data/andressa/MCF-10A/Full Confluency/Serum/120806_1_w1Filter DAPI.TIF: [testng] 03:42:08,535 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 03:42:08,535 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:42:08,535 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-22_03-42-08.log] [testng] 03:42:08,536 |-INFO in ch.qos.logback.core.sift.SiftProcessor@621ad950 - End of configuration. [testng] [2025-03-22 03:42:11,894] [pool-1-thread-6] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s4t41_w1Laser4054BD4BP_s1_t1.stk: [testng] 03:42:11,895 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 03:42:11,895 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:42:11,895 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-22_03-42-11.log] [testng] 03:42:11,896 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2c9d027b - End of configuration. [testng] [2025-03-22 03:42:17,371] [pool-1-thread-5] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s2_t1.TIF: [testng] 03:42:17,372 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 03:42:17,372 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:42:17,372 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-22_03-42-17.log] [testng] 03:42:17,373 |-INFO in ch.qos.logback.core.sift.SiftProcessor@50b70658 - End of configuration. [testng] [2025-03-22 03:42:23,277] [pool-1-thread-5] Used files list does not include base file [testng] [2025-03-22 03:42:23,280] [pool-1-thread-4] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s1_t1.TIF: [testng] 03:42:23,280 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 03:42:23,280 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:42:23,281 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-22_03-42-23.log] [testng] 03:42:23,281 |-INFO in ch.qos.logback.core.sift.SiftProcessor@31ea1833 - End of configuration. [testng] [2025-03-22 03:42:28,539] [pool-1-thread-4] Used files list does not include base file [testng] [2025-03-22 03:42:28,543] [pool-1-thread-3] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t12_w1Laser4054BD4BP_OverView.tif: [testng] 03:42:28,543 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 03:42:28,543 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:42:28,544 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-22_03-42-28.log] [testng] 03:42:28,544 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4f2b1dc1 - End of configuration. [testng] [2025-03-22 03:42:31,856] [pool-1-thread-3] Used files list does not include base file [testng] [2025-03-22 03:42:31,858] [pool-1-thread-2] Initializing /data/chris/exp1_w2CSU RED_s3_t002.stk: [testng] 03:42:31,858 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 03:42:31,858 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:42:31,859 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-22_03-42-31.log] [testng] 03:42:31,859 |-INFO in ch.qos.logback.core.sift.SiftProcessor@67dc22eb - End of configuration. [testng] [2025-03-22 03:42:58,582] [pool-1-thread-2] Initializing /data/samples/zserEight.stk: [testng] [2025-03-22 03:43:09,978] [pool-1-thread-10] Initializing /data/ascb/golgi marker.tif: [testng] [2025-03-22 03:43:28,410] [pool-1-thread-2] Initializing /data/andressa/MCF-10A/Sparse/Serum/Color Combine.tif: [testng] [2025-03-22 03:43:33,003] [pool-1-thread-8] Initializing /data/jmuhlich/metamorph_scan_rgb/Scan 20x obj 40_w1_s1_t1.TIF: [testng] [2025-03-22 03:43:38,345] [pool-1-thread-3] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s1_t1.TIF: [testng] [2025-03-22 03:43:42,874] [pool-1-thread-3] Used files list does not include base file [testng] [2025-03-22 03:43:49,459] [pool-1-thread-10] Initializing /data/qa-17827/G28P2E10-2 x5.TIF: [testng] [2025-03-22 03:43:54,018] [pool-1-thread-7] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211111_HTR5_ISOto5HT_35mmdish/Dish1_w1FRET_t1.TIF: [testng] [2025-03-22 03:44:03,626] [pool-1-thread-12] Initializing /data/jcb/201008090/3T3_ShhN_C_Chh488.stk: [testng] [2025-03-22 03:44:17,001] [pool-1-thread-2] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211116_DRD3_ISOtoDA_4well/Dish3_w1FRET_s1_t1.TIF: [testng] [2025-03-22 03:45:00,498] [pool-1-thread-10] Initializing /data/grant/X.STK: [testng] [2025-03-22 03:45:05,482] [pool-1-thread-12] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s1_t1.TIF: [testng] [2025-03-22 03:45:11,537] [pool-1-thread-12] Used files list does not include base file [testng] [2025-03-22 03:45:11,539] [pool-1-thread-9] Initializing /data/andressa/RPE/Full Confluency/Serum/Color Combine.tif: [testng] [2025-03-22 03:45:34,390] [pool-1-thread-8] Initializing /data/graham/G_Wright deconvolved.stk: [testng] [2025-03-22 03:45:43,669] [pool-1-thread-9] Initializing /data/andressa/MCF-10A/Sparse/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2025-03-22 03:45:58,894] [pool-1-thread-10] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211115_HTR5_ISOto5HT_35mmdish/5HT/Dish1_w1FRET_t1.TIF: [testng] [2025-03-22 03:46:17,834] [pool-1-thread-8] Initializing /data/andressa/RPE/Full Confluency/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2025-03-22 03:46:27,564] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge.TIF: [testng] [2025-03-22 03:46:42,657] [pool-1-thread-5] Initializing /data/chris/Foo/exp1_w1_s1_t1.tif: [testng] [2025-03-22 03:47:47,114] [pool-1-thread-4] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t12_w2Laser4914BD4BP_OverView.tif: [testng] [2025-03-22 03:47:51,666] [pool-1-thread-4] Used files list does not include base file [testng] [2025-03-22 03:48:04,573] [pool-1-thread-9] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s2_t2.TIF: [testng] [2025-03-22 03:48:11,163] [pool-1-thread-9] Used files list does not include base file [testng] [2025-03-22 03:48:15,291] [pool-1-thread-11] Initializing /data/sebastien-besson/new/D2Test/120711/120711_D2Test_001_w1DUAL 491-561.TIF: [testng] [2025-03-22 03:48:20,180] [pool-1-thread-3] Initializing /data/samples/zserSixteen.stk: [testng] [2025-03-22 03:48:38,276] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w3Filter TRITC.jpg: [testng] [2025-03-22 03:48:49,935] [pool-1-thread-3] Initializing /data/josh/EKM49/EKM49_w2568 -TRITC-_t1.TIF: [testng] [2025-03-22 03:49:02,461] [pool-1-thread-8] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211116_DRD3_ISOtoDA_4well/Dish9_w1FRET_s1_t1.TIF: [testng] [2025-03-22 03:49:41,345] [pool-1-thread-4] Initializing /data/sebastien-besson/001/120119_VimMito_001_w1DIC_t1.TIF: [testng] [2025-03-22 03:50:41,557] [pool-1-thread-11] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211203_HTR1E_ISOto5HT_35mm/Dish1_w1FRET_t1.TIF: [testng] [2025-03-22 03:50:58,760] [pool-1-thread-12] Initializing 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[testng] [2025-03-22 03:59:24,802] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w2Filter FITC.TIF: [testng] [2025-03-22 03:59:57,964] [pool-1-thread-3] Initializing /data/hms/HCT116_w1Phase FITC_s7_t1.TIF: [testng] [2025-03-22 04:01:02,182] [pool-1-thread-3] Initializing /data/chris/exp1_w1_s1_t1.tif: [testng] [2025-03-22 04:01:33,117] [pool-1-thread-3] Initializing /data/chris/exp1_w2CSU RED_s3_t001.stk: [testng] [2025-03-22 04:02:00,730] [pool-1-thread-3] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211115_Vec_ISOto5HT_35mmdish/HCl/Dish2_w1FRET_t1.TIF: [testng] [2025-03-22 04:04:57,396] [pool-1-thread-6] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s1_t2.TIF: [testng] [2025-03-22 04:05:04,484] [pool-1-thread-6] Used files list does not include base file [testng] [2025-03-22 04:07:29,418] [pool-1-thread-7] Initializing /data/david/tl4.tif: [testng] [2025-03-22 04:08:07,818] [pool-1-thread-7] Initializing /data/andressa/RPE/Full Confluency/Fibronectin/120806_2_w1Filter DAPI.TIF: [testng] [2025-03-22 04:08:23,469] [pool-1-thread-10] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211202_HTR1E_ISOto5HT_4well/Dish4_w1FRET_s1_t1.TIF: [testng] [2025-03-22 04:09:06,611] [pool-1-thread-6] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211116_DRD2_ISOtoDA_4well/Dish7_w1FRET_s1_t1.TIF: [testng] [2025-03-22 04:10:11,198] [pool-1-thread-7] Initializing /data/ascb/mt prc1 kif4 3.tif: [testng] [2025-03-22 04:10:37,304] [pool-1-thread-7] Initializing /data/doil/001-23 dapi.stk: [testng] [2025-03-22 04:12:42,806] [pool-1-thread-11] Initializing /data/jerome/deconv.STK: [testng] [2025-03-22 04:13:07,721] [pool-1-thread-11] Initializing /data/samples/test-plate/test_s10_t1.tif: [testng] [2025-03-22 04:15:04,333] [pool-1-thread-7] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211116_DRD2_ISOtoDA_4well/Dish2_w1FRET_s1_t1.TIF: [testng] [2025-03-22 04:18:20,637] [pool-1-thread-9] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s1t41_w1Laser4054BD4BP_t1.stk: [testng] [2025-03-22 04:20:27,101] [pool-1-thread-9] Initializing /data/chris/exp1_w2CSU RED_s3_t003.stk: [testng] [2025-03-22 04:20:51,676] [pool-1-thread-9] Initializing /data/josh/EditedMovies/2101to400b.stk: [testng] [2025-03-22 04:22:23,959] [pool-1-thread-3] Initializing /data/chris/exp1_w1CSU GREEN_s3_t001.stk: [testng] [2025-03-22 04:22:48,386] [pool-1-thread-3] Initializing /data/alex/13/LJN_Y1136_13_w2FITC_t2.STK: [testng] [2025-03-22 04:24:02,808] [pool-1-thread-3] Initializing /data/jayne/2celltest10fpstl65power.stk: [testng] [2025-03-22 04:24:32,067] [pool-1-thread-3] Initializing /data/josh/2101to600e.stk: [testng] [2025-03-22 04:26:31,991] [pool-1-thread-9] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211122_HTR1D_ISOto5HT_35mmdish/Dish2_w1FRET_t1.TIF: [testng] [2025-03-22 04:27:24,773] [pool-1-thread-3] Initializing /data/jcb/201008090/3T3_ShhN_C_Nhh594.stk: [testng] [2025-03-22 04:27:57,092] [pool-1-thread-3] Initializing /data/sebastien/GA-2222 raf-1_w2Mono 475 nm.STK: [testng] [2025-03-22 04:28:26,447] [pool-1-thread-3] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211111_Vec_ISOto5HT_35mmdish/Dish1_w1FRET_t1.TIF: [testng] [2025-03-22 04:46:28,754] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge_contrast.jpg: [testng] [2025-03-22 04:46:41,722] [pool-1-thread-12] Initializing /data/heiko/sample_2x2.stk: [testng] [2025-03-22 04:47:10,344] [pool-1-thread-12] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211116_DRD4_ISOtoDA_4well/Dish4_w1FRET_s1_t1.TIF: [testng] [2025-03-22 04:48:22,636] [pool-1-thread-9] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t11_w1Laser4054BD4BP_OverView.tif: [testng] [2025-03-22 04:48:27,402] [pool-1-thread-9] Used files list does not include base file [testng] 04:48:50,738 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 04:48:50,738 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:48:50,739 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-22_04-48-50.log] [testng] 04:48:50,740 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2f80640c - End of configuration. [testng] [2025-03-22 04:49:14,742] [pool-1-thread-9] Initializing /data/sebastien-besson/plk1/plk1_561nm_eb3_3_t1.TIF: [testng] [2025-03-22 04:49:38,265] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2025-03-22 04:49:56,475] [pool-1-thread-9] Initializing /data/andressa/MCF-10A/Sparse/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2025-03-22 04:50:06,140] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w1Filter DAPI.TIF: [testng] [2025-03-22 04:50:32,446] [pool-1-thread-3] Initializing /data/sebastien-besson/new/04/04_w1Both lasers_t1.TIF: [testng] [2025-03-22 04:51:12,316] [pool-1-thread-9] Initializing /data/ascb/mt prc1 kif4 2.tif: [testng] [2025-03-22 04:51:37,711] [pool-1-thread-9] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-5.tif: [testng] [2025-03-22 04:52:02,517] [pool-1-thread-9] Initializing 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[pool-1-thread-3] Initializing /data/qa-16915/m-02-488.ome.tif: [testng] [2025-03-22 05:11:49,884] [pool-1-thread-3] Initializing /data/sebastien-besson/new/D2Test/120711/120711_D2_001_w1DUAL 491-561_t1.TIF: [testng] [2025-03-22 05:12:48,038] [pool-1-thread-2] Initializing /data/qa-16915/m-04.tif: [testng] [2025-03-22 05:13:19,394] [pool-1-thread-2] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211203_HTR1F_ISOto5HT_35mm/Dish2_w1FRET_t1.TIF: [testng] [2025-03-22 05:13:38,170] [pool-1-thread-3] Initializing /data/cumol-test-series/23.001: [testng] [2025-03-22 05:16:03,773] [pool-1-thread-3] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s2_t2.TIF: [testng] [2025-03-22 05:16:10,193] [pool-1-thread-3] Used files list does not include base file [testng] [2025-03-22 05:17:51,719] [pool-1-thread-8] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211203_HTR1E_ISOto5HT_35mm/Dish2_w1FRET_t1.TIF: [testng] [2025-03-22 05:18:33,549] [pool-1-thread-9] Initializing /data/andressa/RPE/Sparse/Serum/120806_2_w1Filter DAPI.TIF: [testng] [2025-03-22 05:19:04,669] [pool-1-thread-3] Initializing /data/jcb/201008090/Color Combine.stk: [testng] [2025-03-22 05:19:29,644] [pool-1-thread-3] Initializing /data/josh/2101to600astk.stk: [testng] [2025-03-22 05:21:02,786] [pool-1-thread-9] Initializing /data/alex/15/LJN_Y1136_15_w2DAPI_t2.STK: [testng] [2025-03-22 05:22:16,961] [pool-1-thread-9] Initializing /data/andressa/RPE/Sparse/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2025-03-22 05:23:26,581] [pool-1-thread-9] Initializing /data/chris-de-graffenried/2011-05-30/ND C4 488 PLK 5682_w1sRFP.stk: [testng] [2025-03-22 05:24:48,670] [pool-1-thread-9] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211203_HTR1F_ISOto5HT_35mm/Dish1_w1FRET_t1.TIF: [testng] [2025-03-22 05:32:13,210] [pool-1-thread-3] Initializing /data/tristan/data IJM/mw1/MDA_mw1(GFP)_w1GFP.TIF: [testng] [2025-03-22 05:32:53,403] [pool-1-thread-3] Initializing 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[pool-1-thread-6] Used files list does not include base file [testng] [2025-03-22 05:35:27,942] [pool-1-thread-3] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211115_Vec_ISOto5HT_35mmdish/5HT/Dish1_w1FRET_t1.TIF: [testng] [2025-03-22 05:35:42,741] [pool-1-thread-2] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211203_Vec_ISOto5HT_35mm/Dish1_w1FRET_t1.TIF: [testng] [2025-03-22 05:36:09,996] [pool-1-thread-10] Initializing /data/samples/zseries.stk: [testng] [2025-03-22 05:36:28,280] [pool-1-thread-6] Initializing /data/qa-16915/m-04-488.tif: [testng] [2025-03-22 05:36:40,554] [pool-1-thread-10] Initializing /data/tristan/data IJM/tl/MDA_TL_t1.TIF: [testng] [2025-03-22 05:37:01,004] [pool-1-thread-6] Initializing /data/josh/EditedMovies/2101to600e.stk: [testng] [2025-03-22 05:37:58,493] [pool-1-thread-10] Initializing /data/qa-31304/Well _C6_1.tif: [testng] [2025-03-22 05:38:25,933] [pool-1-thread-8] Initializing /data/tristan/data IJM/mw3/MDA_MW3(GFP-RFP-GLP)_w1GFP.TIF: [testng] [2025-03-22 05:38:34,459] [pool-1-thread-10] Initializing /data/ascb/monopolar mt aim.tif: [testng] [2025-03-22 05:39:11,150] [pool-1-thread-10] Initializing /data/ascb/mt racgap1 dna.tif: [testng] [2025-03-22 05:39:36,821] [pool-1-thread-6] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s2_t1.TIF: [testng] [2025-03-22 05:39:44,444] [pool-1-thread-6] Used files list does not include base file [testng] [2025-03-22 05:39:52,635] [pool-1-thread-10] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c1s1t11_Laser4054BD4BP.stk: [testng] [2025-03-22 05:39:59,565] [pool-1-thread-10] Used files list does not include base file [testng] [2025-03-22 05:40:06,408] [pool-1-thread-8] Initializing /data/ascb/C1 Stack.stk: [testng] [2025-03-22 05:40:36,895] [pool-1-thread-8] Initializing /data/josh/2101to800.stk: [testng] [2025-03-22 05:41:42,305] [pool-1-thread-7] Initializing 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[pool-1-thread-8] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w2Filter FITC.TIF: [testng] [2025-03-22 07:48:58,257] [pool-1-thread-8] Initializing /data/samples/diatoms3d.stk: [testng] [2025-03-22 07:49:03,256] [pool-1-thread-4] Initializing /data/graham/G_Wright raw.stk: [testng] [2025-03-22 07:49:25,957] [pool-1-thread-8] Initializing /data/tristan/data IJM/mw2/MDA_mw2(GFP-RFP)_w1GFP.TIF: [testng] [2025-03-22 07:49:33,721] [pool-1-thread-4] Initializing /data/qa-30870/220209_posit5.tif: [testng] [2025-03-22 07:50:00,289] [pool-1-thread-4] Initializing /data/imagesc-39526/bottom/956662_PVTom_L7day_4x_z10um_bottom_Region-1_nTiles-029_1_conf561_s1.stk: [testng] [2025-03-22 07:50:25,814] [pool-1-thread-8] Initializing /data/dan/CavAlpha1D_51490_engG4_F_101111_1.tif: [testng] [2025-03-22 07:50:57,190] [pool-1-thread-8] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211122_Vec_ISOto5HT_35mmdish/Dish1_w1FRET_t1.TIF: [testng] [2025-03-22 07:57:26,886] [pool-1-thread-4] Initializing /data/tristan/data IJM/tl_ z/MDA_TL_z_t1.TIF: [testng] [2025-03-22 07:58:40,143] [pool-1-thread-2] Initializing /data/jacques/Repositionnement/Repositionnement_s1_t1.TIF: [testng] [2025-03-22 07:59:02,131] [pool-1-thread-4] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s1t11_w1Laser4054BD4BP.stk: [testng] [2025-03-22 08:00:11,499] [pool-1-thread-4] Initializing /data/sebastien-besson/new/120711_D2_001/120711_D2_001_w1DUAL 491-561_t1.TIF: [testng] [2025-03-22 08:02:06,011] [pool-1-thread-4] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211122_HTR1D_ISOto5HT_35mmdish/Dish3_w1FRET_t1.TIF: [testng] [2025-03-22 08:02:47,915] [pool-1-thread-2] Initializing /data/benedikt/LosslessCompressedSTK.stk: [testng] [2025-03-22 08:04:44,416] [pool-1-thread-2] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211123_HTR1A_ISOto5HT_4well/Dish1_w1FRET_s1_t1.TIF: [testng] [2025-03-22 08:17:43,043] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w3Filter TRITC.TIF: [testng] [2025-03-22 08:18:10,426] [pool-1-thread-8] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211202_HTR1F_ISOto5HT_4well/Dish6_w1FRET_s1_t1.TIF: [testng] 11:05:35,283 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 11:05:35,283 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:05:35,285 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-22_11-05-35.log] [testng] 11:05:35,286 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5b1e1057 - End of configuration. [testng] 11:06:43,308 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 11:06:43,308 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:06:43,309 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-22_11-06-43.log] [testng] 11:06:43,310 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5ba4ae3a - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 13833, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 532 minutes 15 seconds Finished: SUCCESS