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Started by upstream project "BIOFORMATS-test-repo" build number 387 originally caused by: Started by upstream project "Trigger" build number 410 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9 [BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins3118236369620210170.sh + '[' avi = slidebook ']' ++ date +%u + '[' 6 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_61243_merge_ci -v /uod/idr/repos/curated/avi:/data -v /uod/idr-scratch/merge-ci/curated/avi:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 02:20:45,831 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 02:20:45,832 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - No custom configurators were discovered as a service. [testng] 02:20:45,832 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:20:45,833 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:20:45,834 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 02:20:45,834 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 02:20:45,834 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 02:20:45,834 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:20:45,835 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:20:45,835 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 02:20:45,836 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 02:20:45,836 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 02:20:46,005 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:20:46,005 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:20:46,027 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:20:46,027 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:20:46,033 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:20:46,033 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:20:46,033 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:20:46,033 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:20:46,033 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@65c7a252 - End of configuration. [testng] 02:20:46,034 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@38cee291 - Registering current configuration as safe fallback point [testng] 02:20:46,034 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 199 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-03-22 02:20:46,042] [main] java.version = 11.0.16 [testng] 02:20:46,045 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:20:46,045 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:20:46,094 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-22_02-20-46.log] [testng] 02:20:46,096 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13d73f29 - End of configuration. [testng] [2025-03-22 02:20:46,098] [main] testng.directory = /data [testng] [2025-03-22 02:20:46,098] [main] testng.configDirectory = /config [testng] [2025-03-22 02:20:46,108] [main] testng.multiplier = 1.0 [testng] [2025-03-22 02:20:46,110] [main] testng.in-memory = false [testng] [2025-03-22 02:20:46,110] [main] testng.allow-missing = false [testng] [2025-03-22 02:20:46,110] [main] user.language = en [testng] [2025-03-22 02:20:46,110] [main] user.country = ${user.country} [testng] [2025-03-22 02:20:46,110] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2025-03-22 02:20:57,045] [main] ---------------------------------------- [testng] [2025-03-22 02:20:57,045] [main] Total files: 40 [testng] [2025-03-22 02:20:57,045] [main] Scan time: 10.935 s (273 ms/file) [testng] [2025-03-22 02:20:57,045] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 38 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-03-22 02:22:09,649] [pool-1-thread-1] Initializing /data/jules/GUV_long15N_10_20mb_debut_25102011_1_BW.avi: [testng] 02:22:09,650 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:22:09,650 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:22:09,652 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-22_02-22-09.log] [testng] 02:22:09,653 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2dbff49d - End of configuration. [testng] [2025-03-22 02:22:10,605] [pool-1-thread-12] Initializing /data/roger/op9middle40x.lsm movie 2.avi: [testng] 02:22:10,605 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:22:10,605 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:22:10,606 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-22_02-22-10.log] [testng] 02:22:10,607 |-INFO in ch.qos.logback.core.sift.SiftProcessor@79d350e5 - End of configuration. [testng] [2025-03-22 02:22:11,572] [pool-1-thread-11] Initializing /data/chip_avi/Level004-WA-116.avi: [testng] 02:22:11,572 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:22:11,572 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:22:11,573 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-22_02-22-11.log] [testng] 02:22:11,574 |-INFO in ch.qos.logback.core.sift.SiftProcessor@63deeace - End of configuration. [testng] [2025-03-22 02:22:12,422] [pool-1-thread-10] Initializing /data/jae/20xD_5minfor14h.avi: [testng] 02:22:12,423 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:22:12,423 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:22:12,423 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-22_02-22-12.log] [testng] 02:22:12,424 |-INFO in ch.qos.logback.core.sift.SiftProcessor@20a62ab5 - End of configuration. [testng] [2025-03-22 02:22:13,426] [pool-1-thread-9] Initializing /data/qa-5019/nemo-2_10_20.avi: [testng] 02:22:13,426 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:22:13,426 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:22:13,427 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-22_02-22-13.log] [testng] 02:22:13,427 |-INFO in ch.qos.logback.core.sift.SiftProcessor@12753182 - End of configuration. [testng] [2025-03-22 02:22:14,303] [pool-1-thread-8] Initializing /data/roger/op9middle40x.lsm movie 3.avi: [testng] 02:22:14,303 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:22:14,303 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:22:14,303 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-22_02-22-14.log] [testng] 02:22:14,304 |-INFO in ch.qos.logback.core.sift.SiftProcessor@43da03a2 - End of configuration. [testng] [2025-03-22 02:22:15,198] [pool-1-thread-7] Initializing /data/jcb/JCB 201203159/JCB_201203159_0_3.avi: [testng] 02:22:15,199 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:22:15,199 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:22:15,199 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-22_02-22-15.log] [testng] 02:22:15,200 |-INFO in ch.qos.logback.core.sift.SiftProcessor@19495784 - End of configuration. [testng] [2025-03-22 02:22:16,321] [pool-1-thread-6] Initializing /data/simon/24_bit_problem.avi: [testng] 02:22:16,321 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:22:16,321 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:22:16,322 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-22_02-22-16.log] [testng] 02:22:16,322 |-INFO in ch.qos.logback.core.sift.SiftProcessor@74404d7e - End of configuration. [testng] [2025-03-22 02:22:17,520] [pool-1-thread-5] Initializing /data/qa-11011/M-flow10001.avi: [testng] 02:22:17,520 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:22:17,520 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:22:17,521 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-22_02-22-17.log] [testng] 02:22:17,522 |-INFO in ch.qos.logback.core.sift.SiftProcessor@56847b72 - End of configuration. [testng] [2025-03-22 02:22:18,584] [pool-1-thread-4] Initializing /data/kurt/40x_6um.avi: [testng] 02:22:18,585 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:22:18,585 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:22:18,585 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-22_02-22-18.log] [testng] 02:22:18,586 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7a535ae8 - End of configuration. [testng] [2025-03-22 02:22:19,491] [pool-1-thread-3] Initializing /data/chip_avi/Level002-DB-090.avi: [testng] 02:22:19,491 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:22:19,491 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:22:19,492 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-22_02-22-19.log] [testng] 02:22:19,492 |-INFO in ch.qos.logback.core.sift.SiftProcessor@53ebe82b - End of configuration. [testng] [2025-03-22 02:22:20,394] [pool-1-thread-2] Initializing /data/roger/spheroid1.lsm movie.avi: [testng] 02:22:20,395 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:22:20,395 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:22:20,395 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-22_02-22-20.log] [testng] 02:22:20,395 |-INFO in ch.qos.logback.core.sift.SiftProcessor@44269973 - End of configuration. [testng] [2025-03-22 02:22:30,178] [pool-1-thread-7] Initializing /data/chris/APZ04_009.avi: [testng] [2025-03-22 02:22:33,245] [pool-1-thread-3] Initializing /data/jules/GUV_long15N_10_10mb_debut_26102011_4.avi: [testng] [2025-03-22 02:22:35,154] [pool-1-thread-9] Initializing /data/roger/op9middle40x.lsm movie 4.avi: [testng] [2025-03-22 02:22:36,084] [pool-1-thread-11] Initializing /data/sample-avis/extra-chunk/HyperStack.avi: [testng] [2025-03-22 02:22:36,930] [pool-1-thread-8] Initializing /data/pki/yinghua_USPI2-ASMKT772_111017100001_C10_f1.avi: [testng] [2025-03-22 02:22:37,843] [pool-1-thread-6] Initializing /data/kurt/40x_6um_2.avi: [testng] [2025-03-22 02:22:38,690] [pool-1-thread-1] Initializing /data/curtis/mri-stack-ij-new.avi: [testng] [2025-03-22 02:22:39,631] [pool-1-thread-4] Initializing /data/kurt/63x_6um.avi: [testng] [2025-03-22 02:22:40,707] [pool-1-thread-10] Initializing /data/qa-7560/Ex9 ALADIN WT KO KI_DIC_ 31_07_2013_M1.avi: [testng] [2025-03-22 02:22:41,728] [pool-1-thread-5] Initializing /data/qa-7450/MVI_3610.AVI: [testng] [2025-03-22 02:22:42,581] [pool-1-thread-12] Initializing /data/curtis/mri-stack-bf.avi: [testng] [2025-03-22 02:22:43,327] [pool-1-thread-2] Initializing /data/jcb/JCB 201203159/JCB_201203159_0_5.avi: [testng] [2025-03-22 02:22:53,513] [pool-1-thread-11] Initializing /data/roger/op9middle40x.lsm movie.avi: [testng] [2025-03-22 02:22:54,706] [pool-1-thread-1] Initializing /data/qa-7336/2X_63X-DAPI-Emilin2_Filter_Render_Series.avi: [testng] [2025-03-22 02:22:55,893] [pool-1-thread-9] Initializing /data/qa-4232/11051920xdrywithincubatoronthenoff_Subset.avi: [testng] [2025-03-22 02:22:56,824] [pool-1-thread-6] Initializing /data/chip_avi/Level003-DB-089.avi: [testng] [2025-03-22 02:22:57,698] [pool-1-thread-8] Initializing /data/jcb/JCB 201203159/JCB_201203159_0_4.avi: [testng] [2025-03-22 02:22:58,516] [pool-1-thread-12] Initializing /data/sample-avis/rgb-odd-width/HyperStack.avi: [testng] [2025-03-22 02:22:59,337] [pool-1-thread-5] Initializing /data/prairie/cornea dc and macs.AVI: [testng] [2025-03-22 02:23:00,203] [pool-1-thread-2] Initializing /data/roger/spheroid1-crop.lsm movie 2.avi: [testng] [2025-03-22 02:23:01,118] [pool-1-thread-4] Initializing /data/ascb/TIRF.avi: [testng] [2025-03-22 02:23:02,245] [pool-1-thread-10] Initializing /data/chip_avi/Level001-ES-083.avi: [testng] [2025-03-22 02:23:05,858] [pool-1-thread-7] Initializing /data/curtis/mri-stack-ij-old.avi: [testng] [2025-03-22 02:23:10,554] [pool-1-thread-3] Initializing /data/roger/spheroid1-crop.lsm movie.avi: [testng] [2025-03-22 02:23:12,559] [pool-1-thread-12] Initializing /data/qa-5019/nemo-2_1_.avi: [testng] [2025-03-22 02:23:13,790] [pool-1-thread-1] Initializing /data/william/worm.avi: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 2014, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 2 minutes 38 seconds Finished: SUCCESS