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Started by upstream project "BIOFORMATS-test-repo" build number 398 originally caused by: Started by upstream project "Trigger" build number 484 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@4 [BIOFORMATS-test-folder@4] $ /bin/bash -xe /tmp/jenkins14848467060327123855.sh + '[' specs = slidebook ']' ++ date +%u + '[' 7 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_62822_merge_ci -v /uod/idr/repos/curated/specs:/data -v /uod/idr-scratch/merge-ci/curated/specs:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 01:34:42,595 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 01:34:42,596 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - No custom configurators were discovered as a service. [testng] 01:34:42,596 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:34:42,597 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:34:42,597 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:34:42,598 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:34:42,598 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:34:42,598 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:34:42,598 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:34:42,599 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:34:42,599 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:34:42,599 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:34:42,780 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:34:42,780 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:34:42,828 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:34:42,829 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:34:42,834 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:34:42,835 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:34:42,835 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:34:42,835 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:34:42,835 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@3f6f6701 - End of configuration. [testng] 01:34:42,836 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@4f80542f - Registering current configuration as safe fallback point [testng] 01:34:42,836 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 238 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-05-18 01:34:42,846] [main] java.version = 17.0.2 [testng] 01:34:42,849 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:34:42,849 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:34:43,321 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-05-18_01-34-43.log] [testng] 01:34:43,322 |-INFO in ch.qos.logback.core.sift.SiftProcessor@14bdbc74 - End of configuration. [testng] [2025-05-18 01:34:43,324] [main] testng.directory = /data [testng] [2025-05-18 01:34:43,325] [main] testng.configDirectory = /config [testng] [2025-05-18 01:34:43,334] [main] testng.multiplier = 1.0 [testng] [2025-05-18 01:34:43,335] [main] testng.in-memory = false [testng] [2025-05-18 01:34:43,335] [main] testng.allow-missing = false [testng] [2025-05-18 01:34:43,335] [main] user.language = en [testng] [2025-05-18 01:34:43,335] [main] user.country = ${user.country} [testng] [2025-05-18 01:34:43,335] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2025-05-18 03:10:41,193] [main] ---------------------------------------- [testng] [2025-05-18 03:10:41,193] [main] Total files: 226 [testng] [2025-05-18 03:10:41,193] [main] Scan time: 5757.858 s (25477 ms/file) [testng] [2025-05-18 03:10:41,193] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 28 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-05-18 04:24:50,600] [pool-1-thread-1] Initializing /data/fluoview/Sample_XYZ.TIF: [testng] 04:24:50,601 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 04:24:50,601 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:24:50,602 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-05-18_04-24-50.log] [testng] 04:24:50,602 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4960dcf5 - End of configuration. [testng] [2025-05-18 04:25:01,695] [pool-1-thread-12] Initializing /data/fluoview/Sample_XT.tif: [testng] 04:25:01,695 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 04:25:01,695 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:25:01,696 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-05-18_04-25-01.log] [testng] 04:25:01,696 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6be434a4 - End of configuration. [testng] [2025-05-18 04:25:13,600] [pool-1-thread-11] Initializing /data/fluoview/sample_labled_XYZTCh.tif: [testng] 04:25:13,600 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 04:25:13,600 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:25:13,601 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-05-18_04-25-13.log] [testng] 04:25:13,601 |-INFO in ch.qos.logback.core.sift.SiftProcessor@297eb9c7 - End of configuration. [testng] [2025-05-18 04:25:25,070] [pool-1-thread-10] Initializing /data/iplab/Actin.IPL: [testng] 04:25:25,070 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 04:25:25,070 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:25:25,071 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-05-18_04-25-25.log] [testng] 04:25:25,071 |-INFO in ch.qos.logback.core.sift.SiftProcessor@53823e0e - End of configuration. [testng] [2025-05-18 04:25:26,819] [pool-1-thread-9] Initializing /data/iplab/Blend_Dapi.IPL: [testng] 04:25:26,819 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 04:25:26,819 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:25:26,820 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-05-18_04-25-26.log] [testng] 04:25:26,820 |-INFO in ch.qos.logback.core.sift.SiftProcessor@15394219 - End of configuration. [testng] [2025-05-18 04:25:27,758] [pool-1-thread-8] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile--MultiTrack-1.lsm: [testng] 04:25:27,759 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 04:25:27,759 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:25:27,759 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-05-18_04-25-27.log] [testng] 04:25:27,760 |-INFO in ch.qos.logback.core.sift.SiftProcessor@612c0260 - End of configuration. [testng] [2025-05-18 04:25:37,927] [pool-1-thread-7] Initializing /data/iplab/Blend_Tritc.IPL: [testng] 04:25:37,927 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 04:25:37,927 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:25:37,928 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-05-18_04-25-37.log] [testng] 04:25:37,928 |-INFO in ch.qos.logback.core.sift.SiftProcessor@43f76850 - End of configuration. [testng] [2025-05-18 04:25:39,672] [pool-1-thread-6] Initializing /data/iplab/Blend_DIC.IPL: [testng] 04:25:39,672 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 04:25:39,672 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:25:39,673 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-05-18_04-25-39.log] [testng] 04:25:39,673 |-INFO in ch.qos.logback.core.sift.SiftProcessor@19a32b73 - End of configuration. [testng] [2025-05-18 04:25:41,392] [pool-1-thread-5] Initializing /data/fluoview/Sample_ThreeCH.TIF: [testng] 04:25:41,392 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 04:25:41,392 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:25:41,393 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-05-18_04-25-41.log] [testng] 04:25:41,393 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1ca29762 - End of configuration. [testng] [2025-05-18 04:25:52,447] [pool-1-thread-4] Initializing /data/iplab/3t3 Cell.IPL: [testng] 04:25:52,447 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 04:25:52,447 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:25:52,448 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-05-18_04-25-52.log] [testng] 04:25:52,448 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3fb51b91 - End of configuration. [testng] [2025-05-18 04:25:54,151] [pool-1-thread-3] Initializing /data/fluoview/SpineAnimation.avi: [testng] 04:25:54,152 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 04:25:54,152 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:25:54,152 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-05-18_04-25-54.log] [testng] 04:25:54,153 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7b2d131f - End of configuration. [testng] [2025-05-18 04:25:57,609] [pool-1-thread-2] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/test3.dm3: [testng] 04:25:57,609 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 04:25:57,609 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:25:57,610 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-05-18_04-25-57.log] [testng] 04:25:57,610 |-INFO in ch.qos.logback.core.sift.SiftProcessor@b511c76 - End of configuration. [testng] [2025-05-18 04:26:21,917] [pool-1-thread-10] Initializing /data/iplab/16Bit XRay.IPL: [testng] [2025-05-18 04:26:23,888] [pool-1-thread-4] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile-1.lsm: [testng] [2025-05-18 04:26:34,455] [pool-1-thread-7] Initializing /data/fluoview/Sample_XYT.TIF: [testng] [2025-05-18 04:26:46,016] [pool-1-thread-6] Initializing /data/iplab/Chromosomes.IPL: [testng] [2025-05-18 04:26:47,646] [pool-1-thread-9] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/Test.dm3: [testng] [2025-05-18 04:26:49,906] [pool-1-thread-2] Initializing /data/iplab/10x Blood and Bacteria.IPL: [testng] [2025-05-18 04:26:52,061] [pool-1-thread-3] Initializing /data/iplab/Color Histology.IPL: [testng] [2025-05-18 04:27:11,828] [pool-1-thread-6] Initializing /data/fluoview/Sample_TwoCH.TIF: [testng] [2025-05-18 04:27:24,969] [pool-1-thread-10] Initializing /data/iplab/Blend_Fitc.IPL: [testng] [2025-05-18 04:27:27,155] [pool-1-thread-2] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/Test2.dm3: [testng] [2025-05-18 04:27:29,806] [pool-1-thread-9] Initializing /data/iplab/Blend_Final.IPL: [testng] [2025-05-18 04:27:31,983] [pool-1-thread-3] Initializing /data/iplab/Color Image.IPL: [testng] [2025-05-18 04:27:46,109] [pool-1-thread-12] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile-2.lsm: [testng] [2025-05-18 04:27:57,549] [pool-1-thread-5] Initializing /data/fluoview/sample_labled_XYZCh.tif: [testng] [2025-05-18 04:28:09,046] [pool-1-thread-1] Initializing /data/fluoview/SpineAnimation.tif: [testng] [2025-05-18 04:28:21,622] [pool-1-thread-11] Initializing /data/fluoview/sample_labled_XYTCh.tif: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1484, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 176 minutes 20 seconds Finished: SUCCESS