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Started by upstream project "BIOFORMATS-test-repo" build number 398 originally caused by: Started by upstream project "Trigger" build number 484 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@11 [BIOFORMATS-test-folder@11] $ /bin/bash -xe /tmp/jenkins1371182802587804736.sh + '[' fei = slidebook ']' ++ date +%u + '[' 7 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_62823_merge_ci -v /uod/idr/repos/curated/fei:/data -v /uod/idr-scratch/merge-ci/curated/fei:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 01:35:49,696 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 01:35:49,697 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - No custom configurators were discovered as a service. [testng] 01:35:49,697 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:35:49,698 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:35:49,698 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:35:49,699 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:35:49,699 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:35:49,699 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:35:49,699 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:35:49,700 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:35:49,700 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:35:49,700 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:35:49,873 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:35:49,873 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:35:49,897 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:35:49,897 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:35:49,903 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:35:49,903 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:35:49,903 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:35:49,904 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:35:49,904 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@3f6f6701 - End of configuration. [testng] 01:35:49,905 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@4f80542f - Registering current configuration as safe fallback point [testng] 01:35:49,905 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 206 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-05-18 01:35:49,914] [main] java.version = 17.0.2 [testng] 01:35:49,918 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:35:49,918 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:35:49,960 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-05-18_01-35-49.log] [testng] 01:35:49,962 |-INFO in ch.qos.logback.core.sift.SiftProcessor@14bdbc74 - End of configuration. [testng] [2025-05-18 01:35:49,964] [main] testng.directory = /data [testng] [2025-05-18 01:35:49,964] [main] testng.configDirectory = /config [testng] [2025-05-18 01:35:49,973] [main] testng.multiplier = 1.0 [testng] [2025-05-18 01:35:49,974] [main] testng.in-memory = false [testng] [2025-05-18 01:35:49,974] [main] testng.allow-missing = false [testng] [2025-05-18 01:35:49,974] [main] user.language = en [testng] [2025-05-18 01:35:49,974] [main] user.country = ${user.country} [testng] [2025-05-18 01:35:49,974] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2025-05-18 01:36:21,816] [main] ---------------------------------------- [testng] [2025-05-18 01:36:21,816] [main] Total files: 21 [testng] [2025-05-18 01:36:21,816] [main] Scan time: 31.842 s (1516 ms/file) [testng] [2025-05-18 01:36:21,816] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 18 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-05-18 01:41:33,040] [pool-1-thread-1] Initializing /data/venu/VENU_Five.TIF: [testng] 01:41:33,041 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:41:33,041 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:41:33,042 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-05-18_01-41-33.log] [testng] 01:41:33,043 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1e17895 - End of configuration. [testng] [2025-05-18 01:41:58,226] [pool-1-thread-12] Initializing /data/steffen/Batman_008.tif: [testng] 01:41:58,226 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:41:58,227 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:41:58,227 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-05-18_01-41-58.log] [testng] 01:41:58,228 |-INFO in ch.qos.logback.core.sift.SiftProcessor@42750169 - End of configuration. [testng] [2025-05-18 01:42:11,707] [pool-1-thread-11] Initializing /data/venu/VENU03.TIF: [testng] 01:42:11,708 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:42:11,708 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:42:11,709 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-05-18_01-42-11.log] [testng] 01:42:11,709 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5d5e4a26 - End of configuration. [testng] [2025-05-18 01:42:22,059] [pool-1-thread-10] Initializing /data/venu/VENU_Six.TIF: [testng] 01:42:22,059 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:42:22,059 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:42:22,060 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-05-18_01-42-22.log] [testng] 01:42:22,060 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6b7d0e86 - End of configuration. [testng] [2025-05-18 01:42:35,757] [pool-1-thread-9] Initializing /data/peter/ZC_PTCS_ED_1000x_002.tif: [testng] 01:42:35,758 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:42:35,758 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:42:35,758 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-05-18_01-42-35.log] [testng] 01:42:35,759 |-INFO in ch.qos.logback.core.sift.SiftProcessor@46042b4f - End of configuration. [testng] [2025-05-18 01:43:04,313] [pool-1-thread-8] Initializing /data/venu/VENU.TIF: [testng] 01:43:04,313 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:43:04,313 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:43:04,314 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-05-18_01-43-04.log] [testng] 01:43:04,314 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1551141e - End of configuration. [testng] [2025-05-18 01:43:30,761] [pool-1-thread-7] Initializing /data/venu/VENU03.IMG: [testng] 01:43:30,761 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:43:30,761 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:43:30,762 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-05-18_01-43-30.log] [testng] 01:43:30,762 |-INFO in ch.qos.logback.core.sift.SiftProcessor@66cc2c9f - End of configuration. [testng] [2025-05-18 01:43:34,469] [pool-1-thread-6] Initializing /data/venu/VENU_Four.TIF: [testng] 01:43:34,470 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:43:34,470 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:43:34,470 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-05-18_01-43-34.log] [testng] 01:43:34,471 |-INFO in ch.qos.logback.core.sift.SiftProcessor@47483590 - End of configuration. [testng] [2025-05-18 01:43:55,557] [pool-1-thread-5] Initializing /data/venu/VENU_Seven.TIF: [testng] 01:43:55,557 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:43:55,557 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:43:55,558 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-05-18_01-43-55.log] [testng] 01:43:55,558 |-INFO in ch.qos.logback.core.sift.SiftProcessor@836a529 - End of configuration. [testng] [2025-05-18 01:44:16,368] [pool-1-thread-4] Initializing /data/venu/VENU02.TIF: [testng] 01:44:16,368 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:44:16,368 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:44:16,369 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-05-18_01-44-16.log] [testng] 01:44:16,369 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4c509031 - End of configuration. [testng] [2025-05-18 01:44:25,237] [pool-1-thread-3] Initializing /data/venu/VENU01.TIF: [testng] 01:44:25,237 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:44:25,237 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:44:25,238 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-05-18_01-44-25.log] [testng] 01:44:25,238 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5313bd5f - End of configuration. [testng] [2025-05-18 01:44:39,075] [pool-1-thread-2] Initializing /data/qa-11061/Tile_020-009-000_0.tif: [testng] 01:44:39,076 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:44:39,076 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:44:39,076 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-05-18_01-44-39.log] [testng] 01:44:39,077 |-INFO in ch.qos.logback.core.sift.SiftProcessor@67345cc3 - End of configuration. [testng] [2025-05-18 01:45:15,738] [pool-1-thread-7] Initializing /data/venu/VENU_Eight.TIF: [testng] [2025-05-18 01:46:19,154] [pool-1-thread-6] Initializing /data/qa-10514/TITAN_FEI_TIFF_Test_Image.tif: [testng] [2025-05-18 01:46:24,684] [pool-1-thread-1] Initializing /data/qa-4264/08.51.17 CCD Acquire-Acquire CCD Image Display-Acquire CCD -0.tif: [testng] [2025-05-18 01:46:31,996] [pool-1-thread-8] Initializing /data/antoine/Tile_001-002-000_0-000.tif: [testng] [2025-05-18 01:46:39,141] [pool-1-thread-12] Initializing /data/venu/VENU02.IMG: [testng] [2025-05-18 01:46:41,568] [pool-1-thread-10] Initializing /data/venu/VENU01.IMG: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 954, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 13 minutes 50 seconds Finished: SUCCESS