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Started by upstream project "BIOFORMATS-test-repo" build number 5 originally caused by: Started by upstream project "Trigger" build number 6 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@4 [BIOFORMATS-test-folder@4] $ /bin/bash -xe /tmp/jenkins15836527141944146606.sh + '[' gatan-dm2 = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_693_merge_ci -v /uod/idr/repos/curated/gatan-dm2:/data -v /uod/idr-scratch/merge-ci/curated/gatan-dm2:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 01:00:04,545 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:00:04,547 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service. [testng] 01:00:04,547 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:00:04,549 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:00:04,549 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:00:04,549 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:00:04,550 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:00:04,550 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:00:04,550 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:00:04,551 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:00:04,551 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:00:04,551 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:00:04,844 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:00:04,844 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:00:04,901 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:00:04,901 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:00:04,911 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:00:04,911 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:00:04,911 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:00:04,912 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:00:04,912 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration. [testng] 01:00:04,913 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point [testng] 01:00:04,913 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 363 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-03-18 01:00:04,924] [main] java.version = 1.8.0_342 [testng] 01:00:04,928 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:00:04,928 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:00:04,974 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-03-18_01-00-04.log] [testng] 01:00:04,975 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-03-18 01:00:04,977] [main] testng.directory = /data [testng] [2024-03-18 01:00:04,978] [main] testng.configDirectory = /config [testng] [2024-03-18 01:00:04,993] [main] testng.multiplier = 1.0 [testng] [2024-03-18 01:00:04,993] [main] testng.in-memory = false [testng] [2024-03-18 01:00:04,993] [main] testng.allow-missing = false [testng] [2024-03-18 01:00:04,993] [main] user.language = fr [testng] [2024-03-18 01:00:04,993] [main] user.country = FR [testng] [2024-03-18 01:00:04,993] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-03-18 01:00:06,528] [main] ---------------------------------------- [testng] [2024-03-18 01:00:06,528] [main] Total files: 25 [testng] [2024-03-18 01:00:06,528] [main] Scan time: 1.534 s (61 ms/file) [testng] [2024-03-18 01:00:06,528] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 18 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-03-18 01:00:08,744] [pool-1-thread-1] Initializing /data/pang/DLMeD2E1_010500x03.dm2: [testng] 01:00:08,744 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:00:08,744 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:00:08,745 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-03-18_01-00-08.log] [testng] 01:00:08,745 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1666c4ee - End of configuration. [testng] [2024-03-18 01:00:08,802] [pool-1-thread-12] Initializing /data/imagic/13008.dm2: [testng] 01:00:08,803 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:00:08,803 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:00:08,804 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-03-18_01-00-08.log] [testng] 01:00:08,805 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6246d198 - End of configuration. [testng] [2024-03-18 01:00:08,920] [pool-1-thread-11] Initializing /data/imagic/Histiocyte in Skin Dermis.dm2: [testng] 01:00:08,921 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:00:08,921 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:00:08,921 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-03-18_01-00-08.log] [testng] 01:00:08,922 |-INFO in ch.qos.logback.core.sift.SiftProcessor@796cd04c - End of configuration. [testng] [2024-03-18 01:00:08,965] [pool-1-thread-10] Initializing /data/pang/screen capture of metadata/tem_dm_tags_info1.png: [testng] 01:00:08,965 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:00:08,966 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:00:08,967 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-03-18_01-00-08.log] [testng] 01:00:08,968 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b3e5bcb - End of configuration. [testng] [2024-03-18 01:00:09,088] [pool-1-thread-9] Initializing /data/pang/screen capture of metadata/tem_dm_general_info.png: [testng] 01:00:09,088 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:00:09,089 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:00:09,089 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-03-18_01-00-09.log] [testng] 01:00:09,090 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7b8a6ed - End of configuration. [testng] [2024-03-18 01:00:09,094] [pool-1-thread-8] Initializing /data/pang/screen capture of metadata/tem_dm_keywords_info.png: [testng] 01:00:09,094 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:00:09,094 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:00:09,095 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-03-18_01-00-09.log] [testng] 01:00:09,095 |-INFO in ch.qos.logback.core.sift.SiftProcessor@511341bf - End of configuration. [testng] [2024-03-18 01:00:09,101] [pool-1-thread-7] Initializing /data/imagic/not read correctly/Abeta Moon.dm2: [testng] 01:00:09,101 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:00:09,101 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:00:09,102 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-03-18_01-00-09.log] [testng] 01:00:09,103 |-INFO in ch.qos.logback.core.sift.SiftProcessor@b576bcd - End of configuration. [testng] [2024-03-18 01:00:09,215] [pool-1-thread-6] Initializing /data/imagic/not read correctly/Zucchini.dm2: [testng] 01:00:09,215 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:00:09,216 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:00:09,216 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-03-18_01-00-09.log] [testng] 01:00:09,217 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6732483 - End of configuration. [testng] [2024-03-18 01:00:09,325] [pool-1-thread-5] Initializing /data/imagic/TEM 10118.dm2: [testng] 01:00:09,325 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:00:09,325 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:00:09,326 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-03-18_01-00-09.log] [testng] 01:00:09,326 |-INFO in ch.qos.logback.core.sift.SiftProcessor@258fb392 - End of configuration. [testng] [2024-03-18 01:00:09,438] [pool-1-thread-4] Initializing /data/pang/grating025k.dm2: [testng] 01:00:09,438 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:00:09,438 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:00:09,439 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-03-18_01-00-09.log] [testng] 01:00:09,440 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2dafd658 - End of configuration. [testng] [2024-03-18 01:00:09,509] [pool-1-thread-3] Initializing /data/pang/unproc-auto: [testng] 01:00:09,509 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:00:09,510 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:00:09,510 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-03-18_01-00-09.log] [testng] 01:00:09,511 |-INFO in ch.qos.logback.core.sift.SiftProcessor@770f4db4 - End of configuration. [testng] [2024-03-18 01:00:09,611] [pool-1-thread-2] Initializing /data/pang/screen capture of metadata/tem_dm_microscope_info.png: [testng] 01:00:09,612 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:00:09,612 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:00:09,613 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-03-18_01-00-09.log] [testng] 01:00:09,614 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5b00af2b - End of configuration. [testng] [2024-03-18 01:00:12,507] [pool-1-thread-7] Initializing /data/imagic/not read correctly/Zucchini_preview.png: [testng] [2024-03-18 01:00:12,514] [pool-1-thread-4] Initializing /data/imagic/1-1.dm2: [testng] [2024-03-18 01:00:12,535] [pool-1-thread-5] Initializing /data/pang/signed: [testng] [2024-03-18 01:00:12,550] [pool-1-thread-11] Initializing /data/imagic/not read correctly/Abeta Moon_preview.png: [testng] [2024-03-18 01:00:12,554] [pool-1-thread-12] Initializing /data/pang/10500x-o4: [testng] [2024-03-18 01:00:12,577] [pool-1-thread-1] Initializing /data/pang/screen capture of metadata/tem_dm_tags_info2.png: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 954, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 14 seconds Finished: SUCCESS