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Started by upstream project "BIOFORMATS-test-repo" build number 5 originally caused by: Started by upstream project "Trigger" build number 6 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@4 [BIOFORMATS-test-folder@4] $ /bin/bash -xe /tmp/jenkins9321421961159666776.sh + '[' perkinelmer-densitometer = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_694_merge_ci -v /uod/idr/repos/curated/perkinelmer-densitometer:/data -v /uod/idr-scratch/merge-ci/curated/perkinelmer-densitometer:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 01:00:19,847 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:00:19,892 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:00:19,931 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:00:19,931 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:00:19,946 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:00:19,946 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:00:19,946 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:00:19,947 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:00:19,947 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5c30a9b0 - End of configuration. [testng] 01:00:19,948 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@7a69b07 - Registering current configuration as safe fallback point [testng] 01:00:19,948 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5e82df6a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 429 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-03-18 01:00:19,959] [main] java.version = 1.8.0_342 [testng] 01:00:19,963 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:00:19,963 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:00:20,022 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-03-18_01-00-19.log] [testng] 01:00:20,024 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-03-18 01:00:20,027] [main] testng.directory = /data [testng] [2024-03-18 01:00:20,027] [main] testng.configDirectory = /config [testng] [2024-03-18 01:00:20,046] [main] testng.multiplier = 1.0 [testng] [2024-03-18 01:00:20,047] [main] testng.in-memory = false [testng] [2024-03-18 01:00:20,047] [main] testng.allow-missing = false [testng] [2024-03-18 01:00:20,047] [main] user.language = fr [testng] [2024-03-18 01:00:20,047] [main] user.country = FR [testng] [2024-03-18 01:00:20,047] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-03-18 01:00:22,936] [main] ---------------------------------------- [testng] [2024-03-18 01:00:22,936] [main] Total files: 19 [testng] [2024-03-18 01:00:22,936] [main] Scan time: 2.889 s (152 ms/file) [testng] [2024-03-18 01:00:22,936] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 11 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-03-18 01:00:25,234] [pool-1-thread-1] Initializing /data/ascb/Y7616001.hdr: [testng] 01:00:25,234 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:00:25,234 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:00:25,235 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-03-18_01-00-25.log] [testng] 01:00:25,236 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1a454cc7 - End of configuration. [testng] [2024-03-18 01:00:25,283] [pool-1-thread-11] Initializing /data/ascb/U8092001.tif: [testng] 01:00:25,283 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:00:25,283 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:00:25,284 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-03-18_01-00-25.log] [testng] 01:00:25,284 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7480bb37 - End of configuration. [testng] [2024-03-18 01:00:25,377] [pool-1-thread-10] Initializing /data/ascb/3/PT118001.hdr: [testng] 01:00:25,378 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:00:25,378 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:00:25,379 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-03-18_01-00-25.log] [testng] 01:00:25,379 |-INFO in ch.qos.logback.core.sift.SiftProcessor@11d0feee - End of configuration. [testng] [2024-03-18 01:00:25,416] [pool-1-thread-9] Initializing /data/ascb/DP1190.hdr: [testng] 01:00:25,416 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:00:25,416 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:00:25,417 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-03-18_01-00-25.log] [testng] 01:00:25,417 |-INFO in ch.qos.logback.core.sift.SiftProcessor@22fb4d4 - End of configuration. [testng] [2024-03-18 01:00:25,463] [pool-1-thread-8] Initializing /data/ascb/U8092001.hdr: [testng] 01:00:25,463 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:00:25,463 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:00:25,464 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-03-18_01-00-25.log] [testng] 01:00:25,464 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3c8df973 - End of configuration. [testng] [2024-03-18 01:00:25,501] [pool-1-thread-7] Initializing /data/ascb/PT1173A001.hdr: [testng] 01:00:25,501 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:00:25,501 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:00:25,502 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-03-18_01-00-25.log] [testng] 01:00:25,502 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5f610e25 - End of configuration. [testng] [2024-03-18 01:00:25,533] [pool-1-thread-6] Initializing /data/ascb/2/V8701001.hdr: [testng] 01:00:25,533 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:00:25,533 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:00:25,534 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-03-18_01-00-25.log] [testng] 01:00:25,534 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2498bb34 - End of configuration. [testng] [2024-03-18 01:00:25,569] [pool-1-thread-5] Initializing /data/ascb/1/T8710001.hdr: [testng] 01:00:25,569 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:00:25,569 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:00:25,570 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-03-18_01-00-25.log] [testng] 01:00:25,570 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4bd3a4c3 - End of configuration. [testng] [2024-03-18 01:00:25,641] [pool-1-thread-4] Initializing /data/ascb/Y7616001.tif: [testng] 01:00:25,641 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:00:25,641 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:00:25,642 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-03-18_01-00-25.log] [testng] 01:00:25,642 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7a22e90e - End of configuration. [testng] [2024-03-18 01:00:25,756] [pool-1-thread-3] Initializing /data/ascb/PT1173A001.tif: [testng] 01:00:25,756 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:00:25,757 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:00:25,757 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-03-18_01-00-25.log] [testng] 01:00:25,758 |-INFO in ch.qos.logback.core.sift.SiftProcessor@562e0bad - End of configuration. [testng] [2024-03-18 01:00:25,878] [pool-1-thread-2] Initializing /data/ascb/DP1190.tif: [testng] 01:00:25,879 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:00:25,879 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:00:25,879 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-03-18_01-00-25.log] [testng] 01:00:25,880 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5b5576ee - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 583, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 14 seconds Finished: SUCCESS