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Started by upstream project "BIOFORMATS-test-repo" build number 59 originally caused by: Started by upstream project "Trigger" build number 66 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@4 [BIOFORMATS-test-folder@4] $ /bin/bash -xe /tmp/jenkins1677245969139760541.sh + '[' metamorph = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_8750_merge_ci -v /uod/idr/repos/curated/metamorph:/data -v /uod/idr-scratch/merge-ci/curated/metamorph:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 01:56:33,163 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:56:33,165 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service. [testng] 01:56:33,165 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:56:33,166 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:56:33,167 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:56:33,167 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:56:33,167 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:56:33,167 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:56:33,168 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:56:33,168 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:56:33,168 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:56:33,168 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:56:33,411 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:56:33,411 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:56:33,445 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:56:33,445 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:56:33,456 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:56:33,456 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:56:33,456 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:56:33,457 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:56:33,457 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration. [testng] 01:56:33,458 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point [testng] 01:56:33,459 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 291 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-05-10 01:56:33,470] [main] java.version = 1.8.0_342 [testng] 01:56:33,475 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:56:33,475 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:56:33,523 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-05-10_01-56-33.log] [testng] 01:56:33,525 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-05-10 01:56:33,527] [main] testng.directory = /data [testng] [2024-05-10 01:56:33,527] [main] testng.configDirectory = /config [testng] [2024-05-10 01:56:33,540] [main] testng.multiplier = 1.0 [testng] [2024-05-10 01:56:33,540] [main] testng.in-memory = false [testng] [2024-05-10 01:56:33,540] [main] testng.allow-missing = false [testng] [2024-05-10 01:56:33,540] [main] user.language = en [testng] [2024-05-10 01:56:33,540] [main] user.country = ${user.country} [testng] [2024-05-10 01:56:33,541] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-05-10 02:03:06,696] [main] ---------------------------------------- [testng] [2024-05-10 02:03:06,696] [main] Total files: 7329 [testng] [2024-05-10 02:03:06,696] [main] Scan time: 393.154 s (53 ms/file) [testng] [2024-05-10 02:03:06,696] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 209 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-05-10 02:05:55,243] [pool-1-thread-1] Initializing /data/chris-de-graffenried/2011-05-30/ND C4 488 PLK 5682_w1sRFP.stk: [testng] 02:05:55,244 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:05:55,244 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:05:55,245 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-05-10_02-05-55.log] [testng] 02:05:55,245 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1f2d114e - End of configuration. [testng] [2024-05-10 02:05:55,311] [pool-1-thread-12] Initializing /data/samples/zserSixteen.stk: [testng] 02:05:55,311 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:05:55,311 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:05:55,312 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-05-10_02-05-55.log] [testng] 02:05:55,313 |-INFO in ch.qos.logback.core.sift.SiftProcessor@11196573 - End of configuration. [testng] [2024-05-10 02:05:55,346] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge.TIF: [testng] 02:05:55,347 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:05:55,347 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:05:55,347 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-05-10_02-05-55.log] [testng] 02:05:55,348 |-INFO in ch.qos.logback.core.sift.SiftProcessor@182e29a0 - End of configuration. [testng] [2024-05-10 02:05:55,425] [pool-1-thread-10] Initializing /data/grant/Scale_bar_100um_XY_image.TIF: [testng] 02:05:55,425 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:05:55,426 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:05:55,426 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-05-10_02-05-55.log] [testng] 02:05:55,427 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5b063fb6 - End of configuration. [testng] [2024-05-10 02:05:55,513] [pool-1-thread-9] Initializing /data/olivier/01/CDYL_D0_frap_100x_01_w1491-DOUBLE-GFP-DsRed_t1.TIF: [testng] 02:05:55,513 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:05:55,513 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:05:55,514 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-05-10_02-05-55.log] [testng] 02:05:55,514 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5be1f9a3 - End of configuration. [testng] [2024-05-10 02:05:55,670] [pool-1-thread-8] Initializing /data/alex/14/LJN_Y1136_14_w2FITC_t2.STK: [testng] 02:05:55,671 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:05:55,671 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:05:55,671 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-05-10_02-05-55.log] [testng] 02:05:55,671 |-INFO in ch.qos.logback.core.sift.SiftProcessor@294c6b99 - End of configuration. [testng] [2024-05-10 02:05:55,711] [pool-1-thread-7] Initializing /data/grant/XYZ_Image.STK: [testng] 02:05:55,711 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:05:55,711 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:05:55,711 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-05-10_02-05-55.log] [testng] 02:05:55,712 |-INFO in ch.qos.logback.core.sift.SiftProcessor@33ac8aa3 - End of configuration. [testng] [2024-05-10 02:05:55,807] [pool-1-thread-6] Initializing /data/aaron/RR11_2 TRAINED mid lobIX 63X GFP568_s1.STK: [testng] 02:05:55,808 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:05:55,808 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:05:55,808 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-05-10_02-05-55.log] [testng] 02:05:55,808 |-INFO in ch.qos.logback.core.sift.SiftProcessor@39f39938 - End of configuration. [testng] [2024-05-10 02:05:55,897] [pool-1-thread-5] Initializing /data/ascb/C1 Stack.stk: [testng] 02:05:55,897 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:05:55,897 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:05:55,898 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-05-10_02-05-55.log] [testng] 02:05:55,898 |-INFO in ch.qos.logback.core.sift.SiftProcessor@47022ab2 - End of configuration. [testng] [2024-05-10 02:05:55,937] [pool-1-thread-4] Initializing /data/lee/397_w1447 laser_s17_t1_bad.TIF: [testng] 02:05:55,937 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:05:55,937 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:05:55,938 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-05-10_02-05-55.log] [testng] 02:05:55,938 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5594d7ad - End of configuration. [testng] [2024-05-10 02:05:56,051] [pool-1-thread-3] Initializing /data/josh/EKM49/EKM49_w2568 -TRITC-_t1.TIF: [testng] 02:05:56,051 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:05:56,051 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:05:56,051 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-05-10_02-05-56.log] [testng] 02:05:56,052 |-INFO in ch.qos.logback.core.sift.SiftProcessor@11439b9c - End of configuration. [testng] [2024-05-10 02:05:56,177] [pool-1-thread-2] Initializing /data/jacques/Repositionnement/Repositionnement_s1_t1.TIF: [testng] 02:05:56,177 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:05:56,177 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:05:56,178 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-05-10_02-05-56.log] [testng] 02:05:56,178 |-INFO in ch.qos.logback.core.sift.SiftProcessor@43feaee2 - End of configuration. [testng] [2024-05-10 02:05:58,033] [pool-1-thread-12] Initializing /data/josh/EditedMovies/2101to600b.stk: [testng] [2024-05-10 02:05:58,616] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w2Filter FITC.TIF: [testng] [2024-05-10 02:05:58,957] [pool-1-thread-4] Initializing /data/josh/2101to600b.stk: [testng] [2024-05-10 02:06:00,201] [pool-1-thread-6] Initializing /data/samples/10xcalib.stk: [testng] [2024-05-10 02:06:00,312] [pool-1-thread-1] Initializing /data/benedikt/LosslessCompressedSTK.stk: [testng] [2024-05-10 02:06:01,519] [pool-1-thread-7] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w2Filter FITC.TIF: [testng] [2024-05-10 02:06:01,741] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Sparse/Serum/Color Combine.tif: [testng] [2024-05-10 02:06:01,785] [pool-1-thread-5] Initializing /data/tristan/data IJM/mw3_z/MDA_z_MW3(GFP_RFP_GLP)_w3GLP.TIF: [testng] [2024-05-10 02:06:01,841] [pool-1-thread-10] Initializing /data/lee/IXMtest_P24_s9_w560D948A4-4D16-49D0-9080-7575267498F9.tif: [testng] [2024-05-10 02:06:01,872] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-4.tif: [testng] [2024-05-10 02:06:02,236] [pool-1-thread-8] Initializing /data/imagesc-39526/20200622_GDF9_D21_MT Ovary_1/MT_Ovary-11_w1conf640_s1.stk: [testng] [2024-05-10 02:06:02,641] [pool-1-thread-10] Initializing /data/alex/48h/48h_siGW25_w2FITC.TIF: [testng] [2024-05-10 02:06:03,467] [pool-1-thread-7] Initializing /data/jayne/2celltest10fpstl65power.stk: [testng] [2024-05-10 02:06:03,609] [pool-1-thread-6] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s1_t1.TIF: [testng] [2024-05-10 02:06:03,658] [pool-1-thread-6] Used files list does not include base file [testng] [2024-05-10 02:06:03,687] [pool-1-thread-11] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s4t41_w1Laser4054BD4BP_s1_t1.stk: [testng] [2024-05-10 02:06:04,174] [pool-1-thread-2] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/Color Combine.tif: [testng] [2024-05-10 02:06:04,248] [pool-1-thread-10] Initializing /data/samples/test-plate/test_s10_t1.tif: [testng] [2024-05-10 02:06:05,588] [pool-1-thread-5] Initializing /data/grant/XYZC_Image_w1FITC.STK: [testng] [2024-05-10 02:06:06,114] [pool-1-thread-7] Initializing /data/steve/Experiment2.tif: [testng] [2024-05-10 02:06:06,291] [pool-1-thread-12] Initializing /data/chris/exp1_w1CSU GREEN_s3_t002.stk: [testng] [2024-05-10 02:06:06,525] [pool-1-thread-3] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s2_t1.TIF: [testng] [2024-05-10 02:06:06,591] [pool-1-thread-3] Used files list does not include base file [testng] [2024-05-10 02:06:06,863] [pool-1-thread-2] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-5.tif: [testng] [2024-05-10 02:06:07,132] [pool-1-thread-11] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t12_w1Laser4054BD4BP_OverView.tif: [testng] [2024-05-10 02:06:07,155] [pool-1-thread-11] Used files list does not include base file [testng] [2024-05-10 02:06:07,204] [pool-1-thread-12] Initializing /data/dan/CavAlpha1D_51490_engG4_F_101111_1.tif: [testng] [2024-05-10 02:06:07,279] [pool-1-thread-7] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s1t11_w1Laser4054BD4BP.tif: [testng] [2024-05-10 02:06:07,603] [pool-1-thread-6] Initializing /data/andressa/RPE/Full Confluency/Fibronectin/Color Combine.tif: [testng] [2024-05-10 02:06:07,663] [pool-1-thread-11] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s1_t1.TIF: [testng] [2024-05-10 02:06:07,708] [pool-1-thread-11] Used files list does not include base file [testng] [2024-05-10 02:06:07,833] [pool-1-thread-1] Initializing /data/tristan/data IJM/mw1/MDA_mw1(GFP)_w1GFP.TIF: [testng] [2024-05-10 02:06:07,905] [pool-1-thread-7] Initializing /data/graham/G_Wright raw.stk: [testng] [2024-05-10 02:06:08,159] [pool-1-thread-5] Initializing /data/mike/TEST 1_7_w2EN GFP_s1_t61.STK: [testng] [2024-05-10 02:06:08,402] [pool-1-thread-2] Initializing /data/qa-17827/G28P2E10-2 x5.TIF: [testng] [2024-05-10 02:06:08,977] [pool-1-thread-7] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment4_w1CFP-YFP FRET 446.TIF: [testng] [2024-05-10 02:06:09,172] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_2_w3Filter TRITC.jpg: [testng] [2024-05-10 02:06:09,417] [pool-1-thread-1] Initializing /data/imagesc-wafle-2020-08-18/2020-07-31 BB3084 MT3 DAY 4 reactivation/BB3084 in MT3_1_w1SDC488_s1_t1.stk: [testng] [2024-05-10 02:06:09,585] [pool-1-thread-5] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t12_w2Laser4914BD4BP_OverView.tif: [testng] [2024-05-10 02:06:09,599] [pool-1-thread-5] Used files list does not include base file [testng] [2024-05-10 02:06:09,774] [pool-1-thread-2] Initializing 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WTChlor.2_w20 Brightfield_s4.TIF: [testng] [2024-05-10 02:06:20,125] [pool-1-thread-4] Initializing /data/josh/2101to800.stk: [testng] [2024-05-10 02:06:20,881] [pool-1-thread-7] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment3_w1CFP-YFP FRET 446.TIF: [testng] [2024-05-10 02:06:21,301] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge_contrast.jpg: [testng] [2024-05-10 02:06:21,353] [pool-1-thread-9] Initializing /data/jerome/deconv.STK: [testng] [2024-05-10 02:06:21,428] [pool-1-thread-5] Initializing /data/qa-30870/220209_posit5.tif: [testng] [2024-05-10 02:06:21,820] [pool-1-thread-7] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w2Filter FITC.TIF: [testng] [2024-05-10 02:06:22,080] [pool-1-thread-11] Initializing /data/jcb/201008090/3T3_ShhN_C_DIC.stk: [testng] [2024-05-10 02:06:22,391] [pool-1-thread-9] Initializing /data/josh/EditedMovies/2101to600e.stk: [testng] [2024-05-10 02:06:22,850] [pool-1-thread-3] Initializing /data/david/tl4.tif: [testng] [2024-05-10 02:06:23,210] [pool-1-thread-12] Initializing /data/andressa/RPE/Sparse/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2024-05-10 02:06:23,558] [pool-1-thread-5] Initializing /data/bill/FromBillM_New_MM_MDAdata/RWeD62u7dF1Mom1_w1CelegansDIC 100x_t1.TIF: [testng] [2024-05-10 02:06:24,344] [pool-1-thread-6] Initializing /data/jcb/201007118/si133_J3_5_w18- 30- GFP_t1.STK: [testng] [2024-05-10 02:06:24,560] [pool-1-thread-7] Initializing /data/alex/Selected FITC.stk: [testng] [2024-05-10 02:06:24,728] [pool-1-thread-11] Initializing /data/josh/2101to400astk.stk: [testng] [2024-05-10 02:06:28,482] [pool-1-thread-7] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2024-05-10 02:06:28,683] [pool-1-thread-12] Initializing /data/steve/Experiment2.stk: [testng] [2024-05-10 02:06:29,094] [pool-1-thread-4] Initializing /data/andressa/RPE/Full Confluency/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-05-10 02:06:29,300] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Sparse/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-05-10 02:06:29,621] [pool-1-thread-12] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t11_w1Laser4054BD4BP_OverView.tif: [testng] [2024-05-10 02:06:29,667] [pool-1-thread-12] Used files list does not include base file [testng] [2024-05-10 02:06:29,703] [pool-1-thread-9] Initializing /data/hms/HCT116_w1Phase FITC_s7_t1.TIF: [testng] [2024-05-10 02:06:30,902] [pool-1-thread-7] Initializing /data/jae/RGB_s34.tif: [testng] [2024-05-10 02:06:31,373] [pool-1-thread-12] Initializing /data/sebastien-besson/002/120119_VimMito_002_w1DIC_t1.TIF: [testng] [2024-05-10 02:06:32,391] [pool-1-thread-4] Initializing /data/qa-31304/Well _C6_1.tif: [testng] [2024-05-10 02:06:32,613] [pool-1-thread-8] Initializing /data/heiko/metadata_3x3.jpg: [testng] [2024-05-10 02:06:32,909] [pool-1-thread-8] Initializing /data/sebastien-besson/new/04/04_w1Both lasers_t1.TIF: [testng] [2024-05-10 02:06:33,539] [pool-1-thread-7] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c1s1t11_Laser4054BD4BP.stk: [testng] [2024-05-10 02:06:33,586] [pool-1-thread-7] Used files list does not include base file [testng] [2024-05-10 02:06:33,684] [pool-1-thread-3] Initializing /data/andressa/RPE/Full Confluency/Collagen/120806_2_w1Filter DAPI.TIF: [testng] [2024-05-10 02:06:34,279] [pool-1-thread-4] Initializing /data/andressa/RPE/Sparse/Collagen/Color Combine.tif: [testng] [2024-05-10 02:06:34,453] [pool-1-thread-7] Initializing /data/chris-de-graffenried/2011-11-01/DOX FAZ1 568 PLK 4881_w1Cy3.stk: [testng] [2024-05-10 02:06:35,481] [pool-1-thread-3] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s2_t2.TIF: [testng] [2024-05-10 02:06:35,652] [pool-1-thread-3] Used files list does not include base file [testng] [2024-05-10 02:06:35,662] [pool-1-thread-4] Initializing 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02:06:46,439] [pool-1-thread-11] Initializing /data/sebastian/CLC2_GFP root4/0.1% DMSO root4001.tif: [testng] [2024-05-10 02:06:47,055] [pool-1-thread-8] Initializing /data/grant/XYZCT_Image_w1FITC_t1.STK: [testng] [2024-05-10 02:06:47,490] [pool-1-thread-7] Initializing /data/tristan/data IJM/mw1_z/MDA_z_MW1(GFP)_w1GFP.TIF: [testng] [2024-05-10 02:06:47,772] [pool-1-thread-3] Initializing /data/sebastien-besson/new/D2Test/120711/120711_D2Test_001_w1DUAL 491-561.TIF: [testng] [2024-05-10 02:06:47,881] [pool-1-thread-11] Initializing /data/tristan/data IJM/tl_ z/MDA_TL_z_t1.TIF: [testng] [2024-05-10 02:06:48,662] [pool-1-thread-1] Initializing /data/samples/diatoms3d.stk: [testng] [2024-05-10 02:06:49,161] [pool-1-thread-1] Initializing /data/qa-16915/m-02.tif: [testng] [2024-05-10 02:06:49,684] [pool-1-thread-7] Initializing /data/chris/exp1_w2CSU RED_s3_t001.stk: [testng] [2024-05-10 02:06:49,790] [pool-1-thread-3] Initializing /data/samples/single-series-test/test_w1.TIF: [testng] [2024-05-10 02:06:50,525] [pool-1-thread-11] Initializing /data/doil/001-23 dapi.stk: [testng] [2024-05-10 02:06:52,435] [pool-1-thread-7] Initializing /data/qa-16915/m-04.tif: [testng] [2024-05-10 02:06:53,084] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w3Filter TRITC.TIF: [testng] [2024-05-10 02:06:53,395] [pool-1-thread-3] Initializing /data/qa-16915/m-02-488.ome.tif: [testng] [2024-05-10 02:06:54,470] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_2_w1Filter DAPI.TIF: [testng] [2024-05-10 02:06:55,130] [pool-1-thread-1] Initializing /data/jcb/201008090/3T3_ShhN_C_Nhh594.stk: [testng] [2024-05-10 02:06:55,754] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w1Filter DAPI.TIF: [testng] [2024-05-10 02:06:56,370] [pool-1-thread-1] Initializing /data/tristan/data IJM/mw2/MDA_mw2(GFP-RFP)_w1GFP.TIF: [testng] [2024-05-10 02:06:56,450] [pool-1-thread-7] Initializing /data/andressa/RPE/Sparse/Serum/Color Combine.tif: [testng] [2024-05-10 02:06:56,603] [pool-1-thread-8] Initializing /data/josh/EditedMovies/2101to400a.stk: [testng] [2024-05-10 02:06:57,430] [pool-1-thread-3] Initializing /data/josh/EditedMovies/2101to600f.stk: [testng] [2024-05-10 02:06:58,278] [pool-1-thread-9] Initializing /data/andressa/RPE/Full Confluency/Serum/Color Combine.tif: [testng] [2024-05-10 02:06:59,213] [pool-1-thread-7] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w3Filter TRITC.TIF: [testng] [2024-05-10 02:06:59,335] [pool-1-thread-1] Initializing /data/ascb/monopolar mt aim.tif: [testng] [2024-05-10 02:06:59,413] [pool-1-thread-9] Initializing /data/ved/Expt01_w1CFP FRET-S ND0.5_t1.TIF: [testng] [2024-05-10 02:07:00,282] [pool-1-thread-7] Initializing /data/ascb/mt prc1 kif4.tif: [testng] [2024-05-10 02:07:00,394] [pool-1-thread-1] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s1_t2.TIF: [testng] [2024-05-10 02:07:00,510] [pool-1-thread-1] Used files list does not include base file [testng] [2024-05-10 02:07:01,214] [pool-1-thread-9] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w1Filter DAPI.TIF: [testng] [2024-05-10 02:07:01,397] [pool-1-thread-8] Initializing /data/dave/Z Series.stk: [testng] [2024-05-10 02:07:01,434] [pool-1-thread-7] Initializing /data/andressa/RPE/Full Confluency/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-05-10 02:07:01,985] [pool-1-thread-8] Initializing /data/gh-2613/ScanSlide_exp1_rep1_w1confGFP_s1.stk: [testng] [2024-05-10 02:07:02,318] [pool-1-thread-9] Initializing /data/alex/13/LJN_Y1136_13_w2FITC_t2.STK: [testng] [2024-05-10 02:07:02,547] [pool-1-thread-7] Initializing /data/sebastien-besson/new/D2Test/120711/120711_D2_001_w1DUAL 491-561_t1.TIF: [testng] [2024-05-10 02:07:02,799] [pool-1-thread-9] Initializing /data/qa-16915/m-04-561.tif: [testng] [2024-05-10 02:07:03,117] [pool-1-thread-4] Initializing /data/ascb/golgi marker.tif: [testng] [2024-05-10 02:07:03,310] [pool-1-thread-1] Initializing /data/jmuhlich/rgb_w1_s1_t1.TIF: [testng] [2024-05-10 02:07:04,006] [pool-1-thread-3] Initializing /data/sebastien-besson/plk1/plk1_561nm_eb3_3_t1.TIF: [testng] [2024-05-10 02:07:04,321] [pool-1-thread-4] Initializing /data/ascb/RNA dye MT.tif: [testng] [2024-05-10 02:07:04,880] [pool-1-thread-7] Initializing /data/josh/2101to600astk.stk: [testng] [2024-05-10 02:07:13,601] [pool-1-thread-6] Initializing /data/qa-16907/1_w1Single SPI 405.TIF: [testng] [2024-05-10 02:07:13,683] [pool-1-thread-2] Initializing /data/chris/test2_w2_s1_t1.stk: [testng] [2024-05-10 02:07:13,743] [pool-1-thread-8] Initializing /data/samples/zserEight.stk: [testng] [2024-05-10 02:07:13,763] [pool-1-thread-9] Initializing /data/chris/Stream-2(partial).stk: [testng] [2024-05-10 02:07:14,528] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-3.tif: [testng] [2024-05-10 02:07:14,662] [pool-1-thread-3] Initializing /data/samples/10xcalib.tif: [testng] [2024-05-10 02:07:14,733] [pool-1-thread-8] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s2_t2.TIF: [testng] [2024-05-10 02:07:14,779] [pool-1-thread-8] Used files list does not include base file [testng] [2024-05-10 02:07:14,789] [pool-1-thread-4] Initializing /data/pang/z-stack/Z Series.tif: [testng] [2024-05-10 02:07:14,845] [pool-1-thread-2] Initializing /data/josh/EditedMovies/2101to400b.stk: [testng] [2024-05-10 02:07:16,932] [pool-1-thread-12] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment5_w1DUAL 491-561_t1.TIF: [testng] [2024-05-10 02:07:17,181] [pool-1-thread-3] Initializing /data/tristan/data IJM/tl/MDA_TL_t1.TIF: [testng] [2024-05-10 02:07:17,441] [pool-1-thread-4] Initializing /data/qa-16915/m-01-561.ome.tif: [testng] [2024-05-10 02:07:17,645] [pool-1-thread-6] Initializing /data/chris/exp1_w1_s1_t1.tif: [testng] [2024-05-10 02:07:17,872] [pool-1-thread-1] Initializing 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/data/andressa/RPE/Sparse/Serum/120806_2_w1Filter DAPI.TIF: [testng] [2024-05-10 02:07:21,425] [pool-1-thread-3] Initializing /data/stephane/Lame7-E5-Y+-001.stk: [testng] [2024-05-10 02:07:21,488] [pool-1-thread-6] Initializing /data/jcb/201008090/Color Combine.stk: [testng] [2024-05-10 02:07:21,691] [pool-1-thread-9] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s1_t2.TIF: [testng] [2024-05-10 02:07:21,762] [pool-1-thread-9] Used files list does not include base file [testng] [2024-05-10 02:07:22,596] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Sparse/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2024-05-10 02:07:22,665] [pool-1-thread-8] Initializing /data/chris-de-graffenried/ND C4 488 PLK 5682_w1sRFP.stk: [testng] [2024-05-10 02:07:22,756] [pool-1-thread-3] Initializing /data/lee/20130116-u2os-celldensitytest-72h-96h_m08_s9_w2766e46f1-81be-45a2-88b1-abe8da58c47a.tif: [testng] [2024-05-10 02:07:22,960] [pool-1-thread-1] Initializing /data/graham/G_Wright deconvolved.stk: [testng] [2024-05-10 02:07:23,200] [pool-1-thread-6] Initializing /data/sebastien-besson/new/120711_D2_001/120711_D2_001_w1DUAL 491-561_t1.TIF: [testng] [2024-05-10 02:07:23,627] [pool-1-thread-1] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t11_w2Laser4914BD4BP_OverView.tif: [testng] [2024-05-10 02:07:23,682] [pool-1-thread-1] Used files list does not include base file [testng] [2024-05-10 02:07:24,217] [pool-1-thread-1] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s2_t2.TIF: [testng] [2024-05-10 02:07:24,285] [pool-1-thread-1] Used files list does not include base file [testng] [2024-05-10 02:07:24,379] [pool-1-thread-3] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s2_t1.TIF: [testng] [2024-05-10 02:07:24,440] [pool-1-thread-3] Used files list does not include base file [testng] [2024-05-10 02:07:24,450] [pool-1-thread-5] Initializing /data/ascb/RNA dye MT 2.tif: [testng] [2024-05-10 02:07:24,771] [pool-1-thread-4] Initializing /data/alex/15/LJN_Y1136_15_w2DAPI_t2.STK: [testng] [2024-05-10 02:07:24,812] [pool-1-thread-8] Initializing /data/chris/test2_w2_s1_t2.stk: [testng] [2024-05-10 02:07:24,999] [pool-1-thread-9] Initializing /data/tristan/data IJM/mw3/MDA_MW3(GFP-RFP-GLP)_w1GFP.TIF: [testng] [2024-05-10 02:07:25,601] [pool-1-thread-8] Initializing /data/chris/exp1_w1CSU GREEN_s3_t001.stk: [testng] [2024-05-10 02:07:25,897] [pool-1-thread-4] Initializing /data/andressa/RPE/Sparse/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-05-10 02:07:25,967] [pool-1-thread-6] Initializing /data/heiko/sample_3x3.stk: [testng] [2024-05-10 02:07:26,043] [pool-1-thread-5] Initializing /data/ascb/mt aim.tif: [testng] [2024-05-10 02:07:26,377] [pool-1-thread-8] Initializing /data/sebastien-besson/001/120119_VimMito_001_w1DIC_t1.TIF: [testng] [2024-05-10 02:07:27,017] [pool-1-thread-9] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s1_t2.TIF: [testng] [2024-05-10 02:07:27,067] [pool-1-thread-9] Used files list does not include base file [testng] [2024-05-10 02:07:27,125] [pool-1-thread-5] Initializing /data/ascb/golgi marker 2.tif: [testng] [2024-05-10 02:07:27,453] [pool-1-thread-1] Initializing /data/jcb/201008090/3T3_ShhN_C_Chh488.stk: [testng] [2024-05-10 02:07:27,541] [pool-1-thread-3] Initializing /data/samples/zser24.stk: [testng] [2024-05-10 02:07:27,594] [pool-1-thread-12] Initializing /data/ascb/C9 Stack.tif: [testng] [2024-05-10 02:07:27,856] [pool-1-thread-4] Initializing /data/heiko/sample_2x2.stk: [testng] [2024-05-10 02:07:27,945] [pool-1-thread-6] Initializing /data/jmuhlich/metamorph_scan_rgb/Scan 20x obj 40_w1_s1_t1.TIF: [testng] [2024-05-10 02:07:28,174] [pool-1-thread-3] Initializing /data/andressa/RPE/Full Confluency/Fibronectin/120806_2_w1Filter DAPI.TIF: [testng] [2024-05-10 02:07:28,342] [pool-1-thread-5] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s1t41_w1Laser4054BD4BP_t1.stk: [testng] [2024-05-10 02:07:28,684] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w3Filter TRITC.TIF: [testng] [2024-05-10 02:07:29,084] [pool-1-thread-4] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/Color Combine-2.tif: [testng] [2024-05-10 02:07:29,275] [pool-1-thread-5] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c1s1t1.tif: [testng] [2024-05-10 02:07:29,579] [pool-1-thread-5] Initializing /data/chris/Foo/exp1_w1_s1_t1.tif: [testng] [2024-05-10 02:07:32,012] [pool-1-thread-1] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s2_t1.TIF: [testng] [2024-05-10 02:07:32,080] [pool-1-thread-1] Used files list does not include base file [testng] [2024-05-10 02:07:32,176] [pool-1-thread-3] Initializing /data/thomas/t_test2001.tif: [testng] [2024-05-10 02:07:32,254] [pool-1-thread-9] Initializing /data/strand/TS_200nm_3_w2Fluo GFP -100-.TIF: [testng] [2024-05-10 02:07:32,304] [pool-1-thread-12] Initializing /data/grant/X.STK: [testng] [2024-05-10 02:07:32,578] [pool-1-thread-4] Initializing /data/andressa/RPE/Sparse/Fibronectin/Color Combine.tif: [testng] [2024-05-10 02:07:32,871] [pool-1-thread-3] Initializing /data/qa-16915/m-01.tif: [testng] [2024-05-10 02:07:33,643] [pool-1-thread-9] Initializing /data/bill/OX218B3/OX218B3_w1488nm- 30-_t1.STK: [testng] [2024-05-10 02:07:34,305] [pool-1-thread-4] Initializing /data/josh/EditedMovies/2101to800.stk: [testng] [2024-05-10 02:07:34,941] [pool-1-thread-2] Initializing /data/aaron/metamorph.stk: [testng] [2024-05-10 02:07:35,070] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Sparse/Fibronectin/Color Combine.tif: [testng] [2024-05-10 02:07:35,697] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w2Filter FITC.TIF: [testng] [2024-05-10 02:07:36,353] [pool-1-thread-2] Initializing /data/andressa/MCF-10A/Sparse/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-05-10 02:07:36,645] [pool-1-thread-12] Initializing /data/gh-2613/ScanSlide_exp1_rep0_w1confGFP_s1.tif: [testng] [2024-05-10 02:07:36,741] [pool-1-thread-3] Initializing /data/sebastien/GA-2222 raf-1_w2Mono 475 nm.STK: [testng] [2024-05-10 02:07:37,173] [pool-1-thread-1] Initializing /data/thomas/test.tif: [testng] [2024-05-10 02:07:37,753] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w3Filter TRITC.jpg: [testng] [2024-05-10 02:07:37,965] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w3Filter TRITC.TIF: [testng] [2024-05-10 02:07:38,153] [pool-1-thread-1] Initializing /data/chris/exp1_w2CSU RED_s3_t002.stk: [testng] [2024-05-10 02:07:38,355] [pool-1-thread-6] Initializing /data/ascb/mt prc1 kif4 3.tif: [testng] [2024-05-10 02:07:38,507] [pool-1-thread-3] Initializing /data/ascb/mt racgap1 dna.tif: [testng] [2024-05-10 02:07:38,844] [pool-1-thread-2] Initializing /data/qa-16887/m-01.tif: [testng] [2024-05-10 02:07:39,232] [pool-1-thread-4] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s1t11_w1Laser4054BD4BP.stk: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 11077, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 19 minutes 23 seconds Finished: SUCCESS