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Started by upstream project "BIOFORMATS-test-repo" build number 59 originally caused by: Started by upstream project "Trigger" build number 66 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2 [BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins2295702518006432290.sh + '[' avi = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_8751_merge_ci -v /uod/idr/repos/curated/avi:/data -v /uod/idr-scratch/merge-ci/curated/avi:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 02:03:14,737 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:03:14,808 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:03:14,836 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:03:14,836 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:03:14,864 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:03:14,865 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:03:14,865 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:03:14,865 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:03:14,865 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5c30a9b0 - End of configuration. [testng] 02:03:14,866 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@7a69b07 - Registering current configuration as safe fallback point [testng] 02:03:14,866 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5e82df6a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 519 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-05-10 02:03:14,876] [main] java.version = 1.8.0_342 [testng] 02:03:14,880 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:03:14,881 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:03:15,106 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-05-10_02-03-15.log] [testng] 02:03:15,108 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-05-10 02:03:15,126] [main] testng.directory = /data [testng] [2024-05-10 02:03:15,126] [main] testng.configDirectory = /config [testng] [2024-05-10 02:03:15,172] [main] testng.multiplier = 1.0 [testng] [2024-05-10 02:03:15,172] [main] testng.in-memory = false [testng] [2024-05-10 02:03:15,172] [main] testng.allow-missing = false [testng] [2024-05-10 02:03:15,172] [main] user.language = en [testng] [2024-05-10 02:03:15,173] [main] user.country = ${user.country} [testng] [2024-05-10 02:03:15,173] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-05-10 02:03:16,634] [main] ---------------------------------------- [testng] [2024-05-10 02:03:16,635] [main] Total files: 40 [testng] [2024-05-10 02:03:16,635] [main] Scan time: 1.461 s (36 ms/file) [testng] [2024-05-10 02:03:16,635] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 38 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-05-10 02:07:30,338] [pool-1-thread-1] Initializing /data/roger/op9middle40x.lsm movie 4.avi: [testng] 02:07:30,339 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:07:30,339 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:30,340 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-05-10_02-07-30.log] [testng] 02:07:30,340 |-INFO in ch.qos.logback.core.sift.SiftProcessor@808a655 - End of configuration. [testng] [2024-05-10 02:07:30,389] [pool-1-thread-12] Initializing /data/kurt/40x_6um_2.avi: [testng] 02:07:30,389 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:07:30,389 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:30,390 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-05-10_02-07-30.log] [testng] 02:07:30,390 |-INFO in ch.qos.logback.core.sift.SiftProcessor@222e695e - End of configuration. [testng] [2024-05-10 02:07:30,440] [pool-1-thread-11] Initializing /data/curtis/mri-stack-ij-old.avi: [testng] 02:07:30,440 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:07:30,440 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:30,441 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-05-10_02-07-30.log] [testng] 02:07:30,442 |-INFO in ch.qos.logback.core.sift.SiftProcessor@47910ead - End of configuration. [testng] [2024-05-10 02:07:30,458] [pool-1-thread-10] Initializing /data/roger/spheroid1-crop.lsm movie 2.avi: [testng] 02:07:30,458 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:07:30,458 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:30,460 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-05-10_02-07-30.log] [testng] 02:07:30,460 |-INFO in ch.qos.logback.core.sift.SiftProcessor@34e6cb9f - End of configuration. [testng] [2024-05-10 02:07:30,544] [pool-1-thread-9] Initializing /data/sample-avis/rgb-odd-width/HyperStack.avi: [testng] 02:07:30,544 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:07:30,544 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:30,545 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-05-10_02-07-30.log] [testng] 02:07:30,545 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7fd116f1 - End of configuration. [testng] [2024-05-10 02:07:30,552] [pool-1-thread-8] Initializing /data/chris/APZ04_009.avi: [testng] 02:07:30,553 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:07:30,553 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:30,553 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-05-10_02-07-30.log] [testng] 02:07:30,554 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1fe1eed7 - End of configuration. [testng] [2024-05-10 02:07:33,893] [pool-1-thread-7] Initializing /data/qa-7560/Ex9 ALADIN WT KO KI_DIC_ 31_07_2013_M1.avi: [testng] 02:07:33,894 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:07:33,894 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:33,894 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-05-10_02-07-33.log] [testng] 02:07:33,895 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5fdaaecd - End of configuration. [testng] [2024-05-10 02:07:34,199] [pool-1-thread-6] Initializing /data/prairie/cornea dc and macs.AVI: [testng] 02:07:34,200 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:07:34,200 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:34,201 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-05-10_02-07-34.log] [testng] 02:07:34,201 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5975e07a - End of configuration. [testng] [2024-05-10 02:07:34,243] [pool-1-thread-5] Initializing /data/jcb/JCB 201203159/JCB_201203159_0_5.avi: [testng] 02:07:34,243 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:07:34,243 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:34,244 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-05-10_02-07-34.log] [testng] 02:07:34,245 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7d7254df - End of configuration. [testng] [2024-05-10 02:07:34,265] [pool-1-thread-4] Initializing /data/chip_avi/Level002-DB-090.avi: [testng] 02:07:34,265 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:07:34,265 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:34,266 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-05-10_02-07-34.log] [testng] 02:07:34,266 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7c773970 - End of configuration. [testng] [2024-05-10 02:07:34,290] [pool-1-thread-3] Initializing /data/qa-5019/nemo-2_1_.avi: [testng] 02:07:34,290 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:07:34,290 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:34,291 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-05-10_02-07-34.log] [testng] 02:07:34,291 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6adb2dda - End of configuration. [testng] [2024-05-10 02:07:34,324] [pool-1-thread-2] Initializing /data/qa-7450/MVI_3610.AVI: [testng] 02:07:34,324 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:07:34,324 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:34,325 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-05-10_02-07-34.log] [testng] 02:07:34,325 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3d5b3039 - End of configuration. [testng] [2024-05-10 02:07:37,423] [pool-1-thread-9] Initializing /data/sample-avis/extra-chunk/HyperStack.avi: [testng] [2024-05-10 02:07:37,434] [pool-1-thread-11] Initializing /data/pki/yinghua_USPI2-ASMKT772_111017100001_C10_f1.avi: [testng] [2024-05-10 02:07:37,463] [pool-1-thread-4] Initializing /data/ascb/TIRF.avi: [testng] [2024-05-10 02:07:38,215] [pool-1-thread-5] Initializing /data/roger/op9middle40x.lsm movie 2.avi: [testng] [2024-05-10 02:07:38,254] [pool-1-thread-2] Initializing /data/qa-4232/11051920xdrywithincubatoronthenoff_Subset.avi: [testng] [2024-05-10 02:07:38,300] [pool-1-thread-1] Initializing /data/kurt/63x_6um.avi: [testng] [2024-05-10 02:07:38,369] [pool-1-thread-3] Initializing /data/chip_avi/Level004-WA-116.avi: [testng] [2024-05-10 02:07:38,415] [pool-1-thread-10] Initializing /data/jules/GUV_long15N_10_20mb_debut_25102011_1_BW.avi: [testng] [2024-05-10 02:07:38,445] [pool-1-thread-6] Initializing /data/william/worm.avi: [testng] [2024-05-10 02:07:38,460] [pool-1-thread-12] Initializing /data/roger/op9middle40x.lsm movie.avi: [testng] [2024-05-10 02:07:38,768] [pool-1-thread-9] Initializing /data/jcb/JCB 201203159/JCB_201203159_0_4.avi: [testng] [2024-05-10 02:07:38,896] [pool-1-thread-6] Initializing /data/qa-11011/M-flow10001.avi: [testng] [2024-05-10 02:07:39,180] [pool-1-thread-3] Initializing /data/jules/GUV_long15N_10_10mb_debut_26102011_4.avi: [testng] [2024-05-10 02:07:40,653] [pool-1-thread-2] Initializing /data/simon/24_bit_problem.avi: [testng] [2024-05-10 02:07:40,732] [pool-1-thread-9] Initializing /data/chip_avi/Level001-ES-083.avi: [testng] [2024-05-10 02:07:40,820] [pool-1-thread-4] Initializing /data/kurt/40x_6um.avi: [testng] [2024-05-10 02:07:40,894] [pool-1-thread-10] Initializing /data/jcb/JCB 201203159/JCB_201203159_0_3.avi: [testng] [2024-05-10 02:07:40,914] [pool-1-thread-11] Initializing /data/curtis/mri-stack-bf.avi: [testng] [2024-05-10 02:07:40,933] [pool-1-thread-5] Initializing /data/chip_avi/Level003-DB-089.avi: [testng] [2024-05-10 02:07:41,014] [pool-1-thread-7] Initializing /data/roger/op9middle40x.lsm movie 3.avi: [testng] [2024-05-10 02:07:41,064] [pool-1-thread-12] Initializing /data/roger/spheroid1-crop.lsm movie.avi: [testng] [2024-05-10 02:07:41,159] [pool-1-thread-1] Initializing /data/jae/20xD_5minfor14h.avi: [testng] [2024-05-10 02:07:41,416] [pool-1-thread-9] Initializing /data/curtis/mri-stack-ij-new.avi: [testng] [2024-05-10 02:07:41,447] [pool-1-thread-10] Initializing /data/qa-7336/2X_63X-DAPI-Emilin2_Filter_Render_Series.avi: [testng] [2024-05-10 02:07:41,513] [pool-1-thread-11] Initializing /data/roger/spheroid1.lsm movie.avi: [testng] [2024-05-10 02:07:41,597] [pool-1-thread-5] Initializing /data/qa-5019/nemo-2_10_20.avi: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 2014, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 4 minutes 46 seconds Finished: SUCCESS