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Started by upstream project "BIOFORMATS-test-repo" build number 66 originally caused by: Started by upstream project "Trigger" build number 74 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder [BIOFORMATS-test-folder] $ /bin/bash -xe /tmp/jenkins9495838019104291973.sh + '[' specs = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_9840_merge_ci -v /uod/idr/repos/curated/specs:/data -v /uod/idr-scratch/merge-ci/curated/specs:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 07:56:50,365 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 07:56:50,367 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service. [testng] 07:56:50,367 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 07:56:50,368 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 07:56:50,369 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 07:56:50,369 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 07:56:50,369 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 07:56:50,369 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 07:56:50,370 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 07:56:50,370 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 07:56:50,370 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 07:56:50,371 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 07:56:50,702 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 07:56:50,702 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 07:56:50,733 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 07:56:50,733 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 07:56:50,741 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 07:56:50,741 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 07:56:50,741 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 07:56:50,742 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 07:56:50,742 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration. [testng] 07:56:50,743 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point [testng] 07:56:50,743 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 373 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-05-17 07:56:50,753] [main] java.version = 1.8.0_342 [testng] 07:56:50,757 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 07:56:50,757 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:56:50,807 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-05-17_07-56-50.log] [testng] 07:56:50,808 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-05-17 07:56:50,810] [main] testng.directory = /data [testng] [2024-05-17 07:56:50,811] [main] testng.configDirectory = /config [testng] [2024-05-17 07:56:50,825] [main] testng.multiplier = 1.0 [testng] [2024-05-17 07:56:50,826] [main] testng.in-memory = false [testng] [2024-05-17 07:56:50,826] [main] testng.allow-missing = false [testng] [2024-05-17 07:56:50,826] [main] user.language = en [testng] [2024-05-17 07:56:50,826] [main] user.country = ${user.country} [testng] [2024-05-17 07:56:50,826] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-05-17 07:57:02,879] [main] ---------------------------------------- [testng] [2024-05-17 07:57:02,879] [main] Total files: 226 [testng] [2024-05-17 07:57:02,879] [main] Scan time: 12.052 s (53 ms/file) [testng] [2024-05-17 07:57:02,879] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 28 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-05-17 07:57:10,872] [pool-1-thread-1] Initializing /data/fluoview/Sample_XYT.TIF: [testng] 07:57:10,873 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 07:57:10,873 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:57:10,874 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-05-17_07-57-10.log] [testng] 07:57:10,874 |-INFO in ch.qos.logback.core.sift.SiftProcessor@475d920d - End of configuration. [testng] [2024-05-17 07:57:10,924] [pool-1-thread-12] Initializing /data/iplab/Blend_Tritc.IPL: [testng] 07:57:10,925 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 07:57:10,925 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:57:10,926 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-05-17_07-57-10.log] [testng] 07:57:10,926 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1e084cb - End of configuration. [testng] [2024-05-17 07:57:10,939] [pool-1-thread-11] Initializing /data/iplab/3t3 Cell.IPL: [testng] 07:57:10,939 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 07:57:10,939 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:57:10,940 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-05-17_07-57-10.log] [testng] 07:57:10,940 |-INFO in ch.qos.logback.core.sift.SiftProcessor@687ea24e - End of configuration. [testng] [2024-05-17 07:57:10,970] [pool-1-thread-10] Initializing /data/iplab/Color Image.IPL: [testng] 07:57:10,970 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 07:57:10,971 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:57:10,971 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-05-17_07-57-10.log] [testng] 07:57:10,972 |-INFO in ch.qos.logback.core.sift.SiftProcessor@595efc6f - End of configuration. [testng] [2024-05-17 07:57:10,978] [pool-1-thread-9] Initializing /data/fluoview/Sample_ThreeCH.TIF: [testng] 07:57:10,978 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 07:57:10,978 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:57:10,979 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-05-17_07-57-10.log] [testng] 07:57:10,979 |-INFO in ch.qos.logback.core.sift.SiftProcessor@a5a30f1 - End of configuration. [testng] [2024-05-17 07:57:11,039] [pool-1-thread-8] Initializing /data/fluoview/Sample_XT.tif: [testng] 07:57:11,040 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 07:57:11,040 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:57:11,040 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-05-17_07-57-11.log] [testng] 07:57:11,041 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5456e28f - End of configuration. [testng] [2024-05-17 07:57:11,085] [pool-1-thread-7] Initializing /data/fluoview/sample_labled_XYZCh.tif: [testng] 07:57:11,085 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 07:57:11,086 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:57:11,087 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-05-17_07-57-11.log] [testng] 07:57:11,087 |-INFO in ch.qos.logback.core.sift.SiftProcessor@238e95e4 - End of configuration. [testng] [2024-05-17 07:57:11,118] [pool-1-thread-6] Initializing /data/iplab/Blend_Fitc.IPL: [testng] 07:57:11,119 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 07:57:11,119 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:57:11,119 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-05-17_07-57-11.log] [testng] 07:57:11,120 |-INFO in ch.qos.logback.core.sift.SiftProcessor@a9d52bc - End of configuration. [testng] [2024-05-17 07:57:11,140] [pool-1-thread-5] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile--MultiTrack-1.lsm: [testng] 07:57:11,141 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 07:57:11,141 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:57:11,142 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-05-17_07-57-11.log] [testng] 07:57:11,142 |-INFO in ch.qos.logback.core.sift.SiftProcessor@51c6ce2d - End of configuration. [testng] [2024-05-17 07:57:11,218] [pool-1-thread-4] Initializing /data/iplab/Actin.IPL: [testng] 07:57:11,218 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 07:57:11,219 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:57:11,219 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-05-17_07-57-11.log] [testng] 07:57:11,220 |-INFO in ch.qos.logback.core.sift.SiftProcessor@52dea89e - End of configuration. [testng] [2024-05-17 07:57:11,226] [pool-1-thread-3] Initializing /data/iplab/16Bit XRay.IPL: [testng] 07:57:11,226 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 07:57:11,226 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:57:11,227 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-05-17_07-57-11.log] [testng] 07:57:11,227 |-INFO in ch.qos.logback.core.sift.SiftProcessor@389d3a4b - End of configuration. [testng] [2024-05-17 07:57:11,232] [pool-1-thread-2] Initializing /data/fluoview/sample_labled_XYTCh.tif: [testng] 07:57:11,232 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 07:57:11,232 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:57:11,233 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-05-17_07-57-11.log] [testng] 07:57:11,233 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2422e094 - End of configuration. [testng] [2024-05-17 07:57:13,837] [pool-1-thread-3] Initializing /data/fluoview/SpineAnimation.tif: [testng] [2024-05-17 07:57:13,915] [pool-1-thread-4] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile-2.lsm: [testng] [2024-05-17 07:57:13,962] [pool-1-thread-6] Initializing /data/fluoview/SpineAnimation.avi: [testng] [2024-05-17 07:57:13,974] [pool-1-thread-11] Initializing /data/iplab/10x Blood and Bacteria.IPL: [testng] [2024-05-17 07:57:13,981] [pool-1-thread-10] Initializing /data/fluoview/sample_labled_XYZTCh.tif: [testng] [2024-05-17 07:57:14,003] [pool-1-thread-12] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile-1.lsm: [testng] [2024-05-17 07:57:14,096] [pool-1-thread-2] Initializing /data/iplab/Chromosomes.IPL: [testng] [2024-05-17 07:57:14,103] [pool-1-thread-7] Initializing /data/iplab/Color Histology.IPL: [testng] [2024-05-17 07:57:14,109] [pool-1-thread-1] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/Test.dm3: [testng] [2024-05-17 07:57:14,120] [pool-1-thread-9] Initializing /data/iplab/Blend_Final.IPL: [testng] [2024-05-17 07:57:14,128] [pool-1-thread-8] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/test3.dm3: [testng] [2024-05-17 07:57:14,505] [pool-1-thread-2] Initializing /data/iplab/Blend_Dapi.IPL: [testng] [2024-05-17 07:57:14,515] [pool-1-thread-7] Initializing /data/fluoview/Sample_TwoCH.TIF: [testng] [2024-05-17 07:57:14,578] [pool-1-thread-8] Initializing /data/fluoview/Sample_XYZ.TIF: [testng] [2024-05-17 07:57:14,632] [pool-1-thread-1] Initializing /data/iplab/Blend_DIC.IPL: [testng] [2024-05-17 07:57:14,787] [pool-1-thread-9] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/Test2.dm3: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1484, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 30 seconds Finished: SUCCESS