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Started by upstream project "BIOFORMATS-test-repo" build number 66 originally caused by: Started by upstream project "Trigger" build number 74 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder [BIOFORMATS-test-folder] $ /bin/bash -xe /tmp/jenkins9028003320885935719.sh + '[' fei = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_9841_merge_ci -v /uod/idr/repos/curated/fei:/data -v /uod/idr-scratch/merge-ci/curated/fei:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 07:57:22,575 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 07:57:22,577 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service. [testng] 07:57:22,577 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 07:57:22,578 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 07:57:22,578 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 07:57:22,578 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 07:57:22,578 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 07:57:22,578 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 07:57:22,579 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 07:57:22,579 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 07:57:22,579 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 07:57:22,579 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 07:57:22,799 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 07:57:22,799 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 07:57:22,826 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 07:57:22,826 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 07:57:22,834 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 07:57:22,834 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 07:57:22,834 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 07:57:22,835 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 07:57:22,835 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration. [testng] 07:57:22,836 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point [testng] 07:57:22,836 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 257 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-05-17 07:57:22,846] [main] java.version = 1.8.0_342 [testng] 07:57:22,850 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 07:57:22,850 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:57:22,895 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-05-17_07-57-22.log] [testng] 07:57:22,897 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-05-17 07:57:22,899] [main] testng.directory = /data [testng] [2024-05-17 07:57:22,899] [main] testng.configDirectory = /config [testng] [2024-05-17 07:57:22,912] [main] testng.multiplier = 1.0 [testng] [2024-05-17 07:57:22,912] [main] testng.in-memory = false [testng] [2024-05-17 07:57:22,912] [main] testng.allow-missing = false [testng] [2024-05-17 07:57:22,912] [main] user.language = en [testng] [2024-05-17 07:57:22,912] [main] user.country = ${user.country} [testng] [2024-05-17 07:57:22,912] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-05-17 07:57:24,265] [main] ---------------------------------------- [testng] [2024-05-17 07:57:24,265] [main] Total files: 21 [testng] [2024-05-17 07:57:24,266] [main] Scan time: 1.352 s (64 ms/file) [testng] [2024-05-17 07:57:24,266] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 18 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-05-17 07:57:27,600] [pool-1-thread-1] Initializing /data/peter/ZC_PTCS_ED_1000x_002.tif: [testng] 07:57:27,601 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 07:57:27,601 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:57:27,602 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-05-17_07-57-27.log] [testng] 07:57:27,603 |-INFO in ch.qos.logback.core.sift.SiftProcessor@59f9f346 - End of configuration. [testng] [2024-05-17 07:57:27,664] [pool-1-thread-12] Initializing /data/venu/VENU_Six.TIF: [testng] 07:57:27,664 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 07:57:27,664 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:57:27,665 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-05-17_07-57-27.log] [testng] 07:57:27,666 |-INFO in ch.qos.logback.core.sift.SiftProcessor@49e0afe4 - End of configuration. [testng] [2024-05-17 07:57:27,697] [pool-1-thread-11] Initializing /data/antoine/Tile_001-002-000_0-000.tif: [testng] 07:57:27,698 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 07:57:27,698 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:57:27,699 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-05-17_07-57-27.log] [testng] 07:57:27,699 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4a7dfd30 - End of configuration. [testng] [2024-05-17 07:57:27,759] [pool-1-thread-10] Initializing /data/venu/VENU_Seven.TIF: [testng] 07:57:27,759 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 07:57:27,759 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:57:27,760 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-05-17_07-57-27.log] [testng] 07:57:27,761 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5543809a - End of configuration. [testng] [2024-05-17 07:57:27,794] [pool-1-thread-9] Initializing /data/qa-11061/Tile_020-009-000_0.tif: [testng] 07:57:27,794 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 07:57:27,794 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:57:27,795 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-05-17_07-57-27.log] [testng] 07:57:27,796 |-INFO in ch.qos.logback.core.sift.SiftProcessor@260d9797 - End of configuration. [testng] [2024-05-17 07:57:27,850] [pool-1-thread-8] Initializing /data/venu/VENU03.TIF: [testng] 07:57:27,850 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 07:57:27,850 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:57:27,851 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-05-17_07-57-27.log] [testng] 07:57:27,852 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4eb1927e - End of configuration. [testng] [2024-05-17 07:57:27,914] [pool-1-thread-7] Initializing /data/qa-4264/08.51.17 CCD Acquire-Acquire CCD Image Display-Acquire CCD -0.tif: [testng] 07:57:27,914 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 07:57:27,915 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:57:27,915 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-05-17_07-57-27.log] [testng] 07:57:27,916 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3337ffcd - End of configuration. [testng] [2024-05-17 07:57:28,036] [pool-1-thread-6] Initializing /data/venu/VENU01.TIF: [testng] 07:57:28,036 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 07:57:28,036 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:57:28,037 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-05-17_07-57-28.log] [testng] 07:57:28,038 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3886f570 - End of configuration. [testng] [2024-05-17 07:57:28,142] [pool-1-thread-5] Initializing /data/venu/VENU03.IMG: [testng] 07:57:28,142 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 07:57:28,143 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:57:28,143 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-05-17_07-57-28.log] [testng] 07:57:28,144 |-INFO in ch.qos.logback.core.sift.SiftProcessor@cbba92e - End of configuration. [testng] [2024-05-17 07:57:28,165] [pool-1-thread-4] Initializing /data/venu/VENU.TIF: [testng] 07:57:28,165 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 07:57:28,165 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:57:28,166 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-05-17_07-57-28.log] [testng] 07:57:28,167 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2b5c5ec6 - End of configuration. [testng] [2024-05-17 07:57:28,199] [pool-1-thread-3] Initializing /data/qa-10514/TITAN_FEI_TIFF_Test_Image.tif: [testng] 07:57:28,199 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 07:57:28,199 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:57:28,200 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-05-17_07-57-28.log] [testng] 07:57:28,201 |-INFO in ch.qos.logback.core.sift.SiftProcessor@347cb63a - End of configuration. [testng] [2024-05-17 07:57:28,236] [pool-1-thread-2] Initializing /data/venu/VENU_Four.TIF: [testng] 07:57:28,237 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 07:57:28,237 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:57:28,238 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-05-17_07-57-28.log] [testng] 07:57:28,238 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4464067 - End of configuration. [testng] [2024-05-17 07:57:31,277] [pool-1-thread-3] Initializing /data/steffen/Batman_008.tif: [testng] [2024-05-17 07:57:31,344] [pool-1-thread-10] Initializing /data/venu/VENU02.IMG: [testng] [2024-05-17 07:57:31,374] [pool-1-thread-1] Initializing /data/venu/VENU_Eight.TIF: [testng] [2024-05-17 07:57:31,428] [pool-1-thread-5] Initializing /data/venu/VENU02.TIF: [testng] [2024-05-17 07:57:31,516] [pool-1-thread-6] Initializing /data/venu/VENU_Five.TIF: [testng] [2024-05-17 07:57:31,574] [pool-1-thread-8] Initializing /data/venu/VENU01.IMG: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 954, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 14 seconds Finished: SUCCESS