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Started by upstream project "BIOFORMATS-test-repo" build number 66 originally caused by: Started by upstream project "Trigger" build number 74 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@4 [BIOFORMATS-test-folder@4] $ /bin/bash -xe /tmp/jenkins16428518570655495435.sh + '[' afi = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_9894_merge_ci -v /uod/idr/repos/curated/afi:/data -v /uod/idr-scratch/merge-ci/curated/afi:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 08:24:17,065 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 08:24:17,118 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 08:24:17,159 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 08:24:17,159 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 08:24:17,171 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 08:24:17,172 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 08:24:17,172 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 08:24:17,172 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 08:24:17,173 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5c30a9b0 - End of configuration. [testng] 08:24:17,174 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@7a69b07 - Registering current configuration as safe fallback point [testng] 08:24:17,174 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5e82df6a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 429 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-05-17 08:24:17,189] [main] java.version = 1.8.0_342 [testng] 08:24:17,194 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 08:24:17,194 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:24:17,261 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-05-17_08-24-17.log] [testng] 08:24:17,263 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-05-17 08:24:17,266] [main] testng.directory = /data [testng] [2024-05-17 08:24:17,266] [main] testng.configDirectory = /config [testng] [2024-05-17 08:24:17,283] [main] testng.multiplier = 1.0 [testng] [2024-05-17 08:24:17,284] [main] testng.in-memory = false [testng] [2024-05-17 08:24:17,284] [main] testng.allow-missing = false [testng] [2024-05-17 08:24:17,284] [main] user.language = en [testng] [2024-05-17 08:24:17,284] [main] user.country = ${user.country} [testng] [2024-05-17 08:24:17,284] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-05-17 08:24:17,978] [main] ---------------------------------------- [testng] [2024-05-17 08:24:17,978] [main] Total files: 16 [testng] [2024-05-17 08:24:17,978] [main] Scan time: 0.694 s (43 ms/file) [testng] [2024-05-17 08:24:17,978] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 15 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-05-17 08:24:28,010] [pool-1-thread-1] Initializing /data/samples/5400.afi: [testng] 08:24:28,011 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 08:24:28,011 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:24:28,015 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-05-17_08-24-28.log] [testng] 08:24:28,017 |-INFO in ch.qos.logback.core.sift.SiftProcessor@48f7172d - End of configuration. [testng] [2024-05-17 08:24:28,163] [pool-1-thread-12] Initializing /data/samples/5351.afi: [testng] 08:24:28,164 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 08:24:28,164 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:24:28,164 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-05-17_08-24-28.log] [testng] 08:24:28,165 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2703129e - End of configuration. [testng] [2024-05-17 08:24:28,365] [pool-1-thread-11] Initializing /data/samples/5306.afi: [testng] 08:24:28,365 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 08:24:28,365 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:24:28,366 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-05-17_08-24-28.log] [testng] 08:24:28,367 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7ae01901 - End of configuration. [testng] [2024-05-17 08:24:28,430] [pool-1-thread-10] Initializing /data/samples/5383.afi: [testng] 08:24:28,430 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 08:24:28,430 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:24:28,431 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-05-17_08-24-28.log] [testng] 08:24:28,432 |-INFO in ch.qos.logback.core.sift.SiftProcessor@658cc666 - End of configuration. [testng] [2024-05-17 08:24:28,563] [pool-1-thread-9] Initializing /data/samples/5365.afi: [testng] 08:24:28,563 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 08:24:28,563 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:24:28,565 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-05-17_08-24-28.log] [testng] 08:24:28,565 |-INFO in ch.qos.logback.core.sift.SiftProcessor@a984c8b - End of configuration. [testng] [2024-05-17 08:24:28,688] [pool-1-thread-8] Initializing /data/samples/5440.afi: [testng] 08:24:28,689 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 08:24:28,689 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:24:28,690 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-05-17_08-24-28.log] [testng] 08:24:28,691 |-INFO in ch.qos.logback.core.sift.SiftProcessor@53b93950 - End of configuration. [testng] [2024-05-17 08:24:28,804] [pool-1-thread-7] Initializing /data/samples/5446.afi: [testng] 08:24:28,804 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 08:24:28,804 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:24:28,805 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-05-17_08-24-28.log] [testng] 08:24:28,805 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5aa45b1 - End of configuration. [testng] [2024-05-17 08:24:29,055] [pool-1-thread-6] Initializing /data/samples/5339.afi: [testng] 08:24:29,056 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 08:24:29,056 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:24:29,057 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-05-17_08-24-29.log] [testng] 08:24:29,057 |-INFO in ch.qos.logback.core.sift.SiftProcessor@340a1b05 - End of configuration. [testng] [2024-05-17 08:24:29,124] [pool-1-thread-5] Initializing /data/samples/5387.afi: [testng] 08:24:29,124 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 08:24:29,125 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:24:29,126 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-05-17_08-24-29.log] [testng] 08:24:29,138 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3983179c - End of configuration. [testng] [2024-05-17 08:24:29,270] [pool-1-thread-4] Initializing /data/samples/5407.afi: [testng] 08:24:29,271 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 08:24:29,271 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:24:29,272 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-05-17_08-24-29.log] [testng] 08:24:29,272 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5d0a6af8 - End of configuration. [testng] [2024-05-17 08:24:29,361] [pool-1-thread-3] Initializing /data/samples/5347.afi: [testng] 08:24:29,361 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 08:24:29,361 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:24:29,371 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-05-17_08-24-29.log] [testng] 08:24:29,371 |-INFO in ch.qos.logback.core.sift.SiftProcessor@22c473bb - End of configuration. [testng] [2024-05-17 08:24:29,452] [pool-1-thread-2] Initializing /data/samples/5358.afi: [testng] 08:24:29,453 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 08:24:29,453 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:24:29,454 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-05-17_08-24-29.log] [testng] 08:24:29,454 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2da5eb40 - End of configuration. [testng] [2024-05-17 08:25:17,980] [pool-1-thread-1] Initializing /data/samples/5414.afi: [testng] [2024-05-17 08:25:18,195] [pool-1-thread-8] Initializing /data/samples/5343.afi: [testng] [2024-05-17 08:25:22,673] [pool-1-thread-3] Initializing /data/samples/5371.afi: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 795, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 1 minute 57 seconds Finished: SUCCESS