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Started by upstream project "BIOFORMATS-test-repo" build number 66 originally caused by: Started by upstream project "Trigger" build number 74 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@4 [BIOFORMATS-test-folder@4] $ /bin/bash -xe /tmp/jenkins17266818203435598315.sh + '[' sis = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_9895_merge_ci -v /uod/idr/repos/curated/sis:/data -v /uod/idr-scratch/merge-ci/curated/sis:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 08:26:18,798 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 08:26:18,981 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 08:26:19,046 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 08:26:19,047 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 08:26:19,109 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 08:26:19,109 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 08:26:19,110 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 08:26:19,110 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 08:26:19,111 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5c30a9b0 - End of configuration. [testng] 08:26:19,118 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@7a69b07 - Registering current configuration as safe fallback point [testng] 08:26:19,119 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5e82df6a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 858 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-05-17 08:26:19,137] [main] java.version = 1.8.0_342 [testng] 08:26:19,142 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 08:26:19,143 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:26:19,252 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-05-17_08-26-19.log] [testng] 08:26:19,255 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-05-17 08:26:19,258] [main] testng.directory = /data [testng] [2024-05-17 08:26:19,259] [main] testng.configDirectory = /config [testng] [2024-05-17 08:26:19,311] [main] testng.multiplier = 1.0 [testng] [2024-05-17 08:26:19,312] [main] testng.in-memory = false [testng] [2024-05-17 08:26:19,312] [main] testng.allow-missing = false [testng] [2024-05-17 08:26:19,312] [main] user.language = en [testng] [2024-05-17 08:26:19,312] [main] user.country = ${user.country} [testng] [2024-05-17 08:26:19,312] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-05-17 08:26:20,362] [main] ---------------------------------------- [testng] [2024-05-17 08:26:20,363] [main] Total files: 13 [testng] [2024-05-17 08:26:20,363] [main] Scan time: 1.049 s (80 ms/file) [testng] [2024-05-17 08:26:20,363] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 11 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-05-17 08:26:22,450] [pool-1-thread-1] Initializing /data/dimitri/ELN-ARM_00049_38.tif: [testng] 08:26:22,450 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 08:26:22,450 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:26:22,451 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-05-17_08-26-22.log] [testng] 08:26:22,452 |-INFO in ch.qos.logback.core.sift.SiftProcessor@540a7d66 - End of configuration. [testng] [2024-05-17 08:26:22,553] [pool-1-thread-11] Initializing /data/glen/CG 3.31 10K.tif: [testng] 08:26:22,553 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 08:26:22,554 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:26:22,555 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-05-17_08-26-22.log] [testng] 08:26:22,555 |-INFO in ch.qos.logback.core.sift.SiftProcessor@68f2261a - End of configuration. [testng] [2024-05-17 08:26:22,627] [pool-1-thread-10] Initializing /data/glen/L1468a-2_4_15000X.tif: [testng] 08:26:22,628 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 08:26:22,628 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:26:22,629 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-05-17_08-26-22.log] [testng] 08:26:22,629 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6b800d8 - End of configuration. [testng] [2024-05-17 08:26:22,718] [pool-1-thread-9] Initializing /data/glen/L1500k P_3_7500X.tif: [testng] 08:26:22,719 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 08:26:22,719 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:26:22,719 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-05-17_08-26-22.log] [testng] 08:26:22,720 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7aae6594 - End of configuration. [testng] [2024-05-17 08:26:22,786] [pool-1-thread-8] Initializing /data/glen/L1500k P_4_7500X.tif: [testng] 08:26:22,787 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 08:26:22,787 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:26:22,788 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-05-17_08-26-22.log] [testng] 08:26:22,789 |-INFO in ch.qos.logback.core.sift.SiftProcessor@770990d8 - End of configuration. [testng] [2024-05-17 08:26:22,878] [pool-1-thread-7] Initializing /data/pki/Tv2.tif: [testng] 08:26:22,879 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 08:26:22,879 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:26:22,880 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-05-17_08-26-22.log] [testng] 08:26:22,881 |-INFO in ch.qos.logback.core.sift.SiftProcessor@e2c4c0 - End of configuration. [testng] [2024-05-17 08:26:22,964] [pool-1-thread-6] Initializing /data/strand/FS44-1-254.tif: [testng] 08:26:22,964 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 08:26:22,965 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:26:22,966 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-05-17_08-26-22.log] [testng] 08:26:22,966 |-INFO in ch.qos.logback.core.sift.SiftProcessor@375f7b74 - End of configuration. [testng] [2024-05-17 08:26:23,025] [pool-1-thread-5] Initializing /data/glen/CG 3.31 20K.tif: [testng] 08:26:23,025 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 08:26:23,025 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:26:23,026 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-05-17_08-26-23.log] [testng] 08:26:23,026 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6e58bd0b - End of configuration. [testng] [2024-05-17 08:26:23,105] [pool-1-thread-4] Initializing /data/glen/CG 3.31 15K.tif: [testng] 08:26:23,105 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 08:26:23,106 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:26:23,106 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-05-17_08-26-23.log] [testng] 08:26:23,107 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6ece954 - End of configuration. [testng] [2024-05-17 08:26:23,157] [pool-1-thread-3] Initializing /data/russell/Arbacia 2week ADL.tif: [testng] 08:26:23,157 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 08:26:23,157 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:26:23,158 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-05-17_08-26-23.log] [testng] 08:26:23,158 |-INFO in ch.qos.logback.core.sift.SiftProcessor@447a7b4e - End of configuration. [testng] [2024-05-17 08:26:23,214] [pool-1-thread-2] Initializing /data/strand/MIA.tif: [testng] 08:26:23,214 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 08:26:23,215 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:26:23,215 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-05-17_08-26-23.log] [testng] 08:26:23,216 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1a10ba53 - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 583, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 19 seconds Finished: SUCCESS