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Started by upstream project "BIOFORMATS-test-repo" build number 66 originally caused by: Started by upstream project "Trigger" build number 74 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@4 [BIOFORMATS-test-folder@4] $ /bin/bash -xe /tmp/jenkins4872118122698637336.sh + '[' metamorph = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_9898_merge_ci -v /uod/idr/repos/curated/metamorph:/data -v /uod/idr-scratch/merge-ci/curated/metamorph:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 08:29:10,914 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 08:29:10,916 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service. [testng] 08:29:10,916 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 08:29:10,917 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 08:29:10,917 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 08:29:10,917 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 08:29:10,918 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 08:29:10,918 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 08:29:10,918 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 08:29:10,919 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 08:29:10,919 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 08:29:10,919 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 08:29:11,187 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 08:29:11,187 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 08:29:11,219 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 08:29:11,219 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 08:29:11,230 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 08:29:11,230 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 08:29:11,230 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 08:29:11,231 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 08:29:11,231 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration. [testng] 08:29:11,232 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point [testng] 08:29:11,232 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 314 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-05-17 08:29:11,248] [main] java.version = 1.8.0_342 [testng] 08:29:11,254 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 08:29:11,254 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:29:11,314 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-05-17_08-29-11.log] [testng] 08:29:11,316 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-05-17 08:29:11,319] [main] testng.directory = /data [testng] [2024-05-17 08:29:11,319] [main] testng.configDirectory = /config [testng] [2024-05-17 08:29:11,333] [main] testng.multiplier = 1.0 [testng] [2024-05-17 08:29:11,333] [main] testng.in-memory = false [testng] [2024-05-17 08:29:11,333] [main] testng.allow-missing = false [testng] [2024-05-17 08:29:11,333] [main] user.language = en [testng] [2024-05-17 08:29:11,333] [main] user.country = ${user.country} [testng] [2024-05-17 08:29:11,333] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-05-17 08:35:51,508] [main] ---------------------------------------- [testng] [2024-05-17 08:35:51,508] [main] Total files: 7329 [testng] [2024-05-17 08:35:51,508] [main] Scan time: 400.175 s (54 ms/file) [testng] [2024-05-17 08:35:51,508] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 209 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-05-17 08:39:10,878] [pool-1-thread-1] Initializing /data/chris-de-graffenried/2011-05-30/ND C4 488 PLK 5682_w1sRFP.stk: [testng] 08:39:10,878 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 08:39:10,878 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:39:10,879 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-05-17_08-39-10.log] [testng] 08:39:10,880 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3bdfddcb - End of configuration. [testng] [2024-05-17 08:39:10,940] [pool-1-thread-12] Initializing /data/samples/zserSixteen.stk: [testng] 08:39:10,940 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 08:39:10,940 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:39:10,941 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-05-17_08-39-10.log] [testng] 08:39:10,941 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7f46834 - End of configuration. [testng] [2024-05-17 08:39:10,977] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge.TIF: [testng] 08:39:10,977 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 08:39:10,977 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:39:10,978 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-05-17_08-39-10.log] [testng] 08:39:10,978 |-INFO in ch.qos.logback.core.sift.SiftProcessor@726cc53c - End of configuration. [testng] [2024-05-17 08:39:11,052] [pool-1-thread-10] Initializing /data/grant/Scale_bar_100um_XY_image.TIF: [testng] 08:39:11,052 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 08:39:11,052 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:39:11,053 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-05-17_08-39-11.log] [testng] 08:39:11,053 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3df8f40f - End of configuration. [testng] [2024-05-17 08:39:11,139] [pool-1-thread-9] Initializing /data/olivier/01/CDYL_D0_frap_100x_01_w1491-DOUBLE-GFP-DsRed_t1.TIF: [testng] 08:39:11,139 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 08:39:11,139 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:39:11,140 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-05-17_08-39-11.log] [testng] 08:39:11,140 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3fb2f0e4 - End of configuration. [testng] [2024-05-17 08:39:11,286] [pool-1-thread-8] Initializing /data/alex/14/LJN_Y1136_14_w2FITC_t2.STK: [testng] 08:39:11,286 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 08:39:11,286 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:39:11,286 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-05-17_08-39-11.log] [testng] 08:39:11,287 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3b0323b4 - End of configuration. [testng] [2024-05-17 08:39:11,314] [pool-1-thread-7] Initializing /data/grant/XYZ_Image.STK: [testng] 08:39:11,315 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 08:39:11,315 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:39:11,315 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-05-17_08-39-11.log] [testng] 08:39:11,316 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4f094187 - End of configuration. [testng] [2024-05-17 08:39:11,412] [pool-1-thread-6] Initializing /data/aaron/RR11_2 TRAINED mid lobIX 63X GFP568_s1.STK: [testng] 08:39:11,412 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 08:39:11,412 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:39:11,414 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-05-17_08-39-11.log] [testng] 08:39:11,414 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1c6036c3 - End of configuration. [testng] [2024-05-17 08:39:11,572] [pool-1-thread-5] Initializing /data/ascb/C1 Stack.stk: [testng] 08:39:11,572 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 08:39:11,572 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:39:11,573 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-05-17_08-39-11.log] [testng] 08:39:11,573 |-INFO in ch.qos.logback.core.sift.SiftProcessor@226bd14b - End of configuration. [testng] [2024-05-17 08:39:11,627] [pool-1-thread-4] Initializing /data/lee/397_w1447 laser_s17_t1_bad.TIF: [testng] 08:39:11,628 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 08:39:11,628 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:39:11,628 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-05-17_08-39-11.log] [testng] 08:39:11,629 |-INFO in ch.qos.logback.core.sift.SiftProcessor@568804a0 - End of configuration. [testng] [2024-05-17 08:39:11,745] [pool-1-thread-3] Initializing /data/josh/EKM49/EKM49_w2568 -TRITC-_t1.TIF: [testng] 08:39:11,746 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 08:39:11,746 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:39:11,746 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-05-17_08-39-11.log] [testng] 08:39:11,747 |-INFO in ch.qos.logback.core.sift.SiftProcessor@64583e78 - End of configuration. [testng] [2024-05-17 08:39:11,893] [pool-1-thread-2] Initializing /data/jacques/Repositionnement/Repositionnement_s1_t1.TIF: [testng] 08:39:11,893 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 08:39:11,893 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:39:11,894 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-05-17_08-39-11.log] [testng] 08:39:11,894 |-INFO in ch.qos.logback.core.sift.SiftProcessor@700869fc - End of configuration. [testng] [2024-05-17 08:39:14,639] [pool-1-thread-12] Initializing /data/josh/EditedMovies/2101to600b.stk: [testng] [2024-05-17 08:39:15,273] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w2Filter FITC.TIF: [testng] [2024-05-17 08:39:15,748] [pool-1-thread-6] Initializing /data/josh/2101to600b.stk: [testng] [2024-05-17 08:39:17,232] [pool-1-thread-1] Initializing /data/samples/10xcalib.stk: [testng] [2024-05-17 08:39:17,281] [pool-1-thread-4] Initializing /data/benedikt/LosslessCompressedSTK.stk: [testng] [2024-05-17 08:39:18,048] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w2Filter FITC.TIF: [testng] [2024-05-17 08:39:18,116] [pool-1-thread-7] Initializing /data/andressa/MCF-10A/Sparse/Serum/Color Combine.tif: [testng] [2024-05-17 08:39:18,250] [pool-1-thread-11] Initializing /data/lee/IXMtest_P24_s9_w560D948A4-4D16-49D0-9080-7575267498F9.tif: [testng] [2024-05-17 08:39:18,293] [pool-1-thread-10] Initializing /data/tristan/data IJM/mw3_z/MDA_z_MW3(GFP_RFP_GLP)_w3GLP.TIF: [testng] [2024-05-17 08:39:18,921] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-4.tif: [testng] [2024-05-17 08:39:19,082] [pool-1-thread-8] Initializing /data/imagesc-39526/20200622_GDF9_D21_MT Ovary_1/MT_Ovary-11_w1conf640_s1.stk: [testng] [2024-05-17 08:39:19,424] [pool-1-thread-11] Initializing /data/alex/48h/48h_siGW25_w2FITC.TIF: [testng] [2024-05-17 08:39:19,585] [pool-1-thread-5] Initializing /data/jayne/2celltest10fpstl65power.stk: [testng] [2024-05-17 08:39:19,957] [pool-1-thread-7] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s1_t1.TIF: [testng] [2024-05-17 08:39:20,038] [pool-1-thread-7] Used files list does not include base file [testng] [2024-05-17 08:39:20,764] [pool-1-thread-2] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s4t41_w1Laser4054BD4BP_s1_t1.stk: [testng] [2024-05-17 08:39:20,812] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/Color Combine.tif: [testng] [2024-05-17 08:39:21,106] [pool-1-thread-11] Initializing /data/samples/test-plate/test_s10_t1.tif: [testng] [2024-05-17 08:39:23,398] [pool-1-thread-5] Initializing /data/grant/XYZC_Image_w1FITC.STK: [testng] [2024-05-17 08:39:23,870] [pool-1-thread-10] Initializing /data/steve/Experiment2.tif: [testng] [2024-05-17 08:39:24,404] [pool-1-thread-12] Initializing /data/chris/exp1_w1CSU GREEN_s3_t002.stk: [testng] [2024-05-17 08:39:24,584] [pool-1-thread-3] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s2_t1.TIF: [testng] [2024-05-17 08:39:24,680] [pool-1-thread-3] Used files list does not include base file [testng] [2024-05-17 08:39:24,825] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-5.tif: [testng] [2024-05-17 08:39:25,451] [pool-1-thread-12] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t12_w1Laser4054BD4BP_OverView.tif: [testng] [2024-05-17 08:39:25,475] [pool-1-thread-12] Used files list does not include base file [testng] [2024-05-17 08:39:25,484] [pool-1-thread-10] Initializing /data/dan/CavAlpha1D_51490_engG4_F_101111_1.tif: [testng] [2024-05-17 08:39:25,844] [pool-1-thread-7] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s1t11_w1Laser4054BD4BP.tif: [testng] [2024-05-17 08:39:25,871] [pool-1-thread-2] Initializing /data/andressa/RPE/Full Confluency/Fibronectin/Color Combine.tif: [testng] [2024-05-17 08:39:26,037] [pool-1-thread-12] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s1_t1.TIF: [testng] [2024-05-17 08:39:26,084] [pool-1-thread-12] Used files list does not include base file [testng] [2024-05-17 08:39:26,086] [pool-1-thread-4] Initializing /data/tristan/data IJM/mw1/MDA_mw1(GFP)_w1GFP.TIF: [testng] [2024-05-17 08:39:26,259] [pool-1-thread-1] Initializing /data/graham/G_Wright raw.stk: [testng] [2024-05-17 08:39:26,390] [pool-1-thread-5] Initializing /data/mike/TEST 1_7_w2EN GFP_s1_t61.STK: [testng] [2024-05-17 08:39:26,701] [pool-1-thread-7] Initializing /data/qa-17827/G28P2E10-2 x5.TIF: [testng] [2024-05-17 08:39:27,349] [pool-1-thread-1] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment4_w1CFP-YFP FRET 446.TIF: [testng] [2024-05-17 08:39:27,505] [pool-1-thread-2] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_2_w3Filter TRITC.jpg: [testng] [2024-05-17 08:39:27,714] [pool-1-thread-4] Initializing /data/imagesc-wafle-2020-08-18/2020-07-31 BB3084 MT3 DAY 4 reactivation/BB3084 in MT3_1_w1SDC488_s1_t1.stk: [testng] [2024-05-17 08:39:27,821] [pool-1-thread-5] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t12_w2Laser4914BD4BP_OverView.tif: [testng] [2024-05-17 08:39:27,847] [pool-1-thread-5] Used files list does not include base file [testng] [2024-05-17 08:39:28,157] [pool-1-thread-7] Initializing 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WTChlor.2_w20 Brightfield_s4.TIF: [testng] [2024-05-17 08:39:37,097] [pool-1-thread-8] Initializing /data/cumol-test-series/23.001: [testng] [2024-05-17 08:39:37,191] [pool-1-thread-6] Initializing /data/josh/2101to800.stk: [testng] [2024-05-17 08:39:38,515] [pool-1-thread-1] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment3_w1CFP-YFP FRET 446.TIF: [testng] [2024-05-17 08:39:38,587] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge_contrast.jpg: [testng] [2024-05-17 08:39:38,664] [pool-1-thread-3] Initializing /data/jerome/deconv.STK: [testng] [2024-05-17 08:39:38,789] [pool-1-thread-9] Initializing /data/qa-30870/220209_posit5.tif: [testng] [2024-05-17 08:39:39,786] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w2Filter FITC.TIF: [testng] [2024-05-17 08:39:39,933] [pool-1-thread-8] Initializing /data/jcb/201008090/3T3_ShhN_C_DIC.stk: [testng] [2024-05-17 08:39:40,090] [pool-1-thread-1] Initializing /data/josh/EditedMovies/2101to600e.stk: [testng] [2024-05-17 08:39:40,619] [pool-1-thread-10] Initializing /data/david/tl4.tif: [testng] [2024-05-17 08:39:41,101] [pool-1-thread-5] Initializing /data/andressa/RPE/Sparse/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2024-05-17 08:39:41,606] [pool-1-thread-9] Initializing /data/bill/FromBillM_New_MM_MDAdata/RWeD62u7dF1Mom1_w1CelegansDIC 100x_t1.TIF: [testng] [2024-05-17 08:39:42,863] [pool-1-thread-2] Initializing /data/jcb/201007118/si133_J3_5_w18- 30- GFP_t1.STK: [testng] [2024-05-17 08:39:43,638] [pool-1-thread-8] Initializing /data/alex/Selected FITC.stk: [testng] [2024-05-17 08:39:43,950] [pool-1-thread-3] Initializing /data/josh/2101to400astk.stk: [testng] [2024-05-17 08:39:46,868] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2024-05-17 08:39:47,268] [pool-1-thread-6] Initializing /data/steve/Experiment2.stk: [testng] [2024-05-17 08:39:47,351] [pool-1-thread-1] Initializing /data/andressa/RPE/Full Confluency/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-05-17 08:39:47,579] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Sparse/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-05-17 08:39:47,886] [pool-1-thread-6] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t11_w1Laser4054BD4BP_OverView.tif: [testng] [2024-05-17 08:39:47,911] [pool-1-thread-6] Used files list does not include base file [testng] [2024-05-17 08:39:47,966] [pool-1-thread-5] Initializing /data/hms/HCT116_w1Phase FITC_s7_t1.TIF: [testng] [2024-05-17 08:39:49,228] [pool-1-thread-6] Initializing /data/jae/RGB_s34.tif: [testng] [2024-05-17 08:39:49,530] [pool-1-thread-12] Initializing /data/sebastien-besson/002/120119_VimMito_002_w1DIC_t1.TIF: [testng] [2024-05-17 08:39:49,985] [pool-1-thread-8] Initializing /data/qa-31304/Well _C6_1.tif: [testng] [2024-05-17 08:39:50,104] [pool-1-thread-1] Initializing 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file [testng] [2024-05-17 08:39:53,836] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Full Confluency/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-05-17 08:39:54,858] [pool-1-thread-6] Initializing /data/chris/exp1_w2CSU RED_s3_t003.stk: [testng] [2024-05-17 08:39:57,005] [pool-1-thread-9] Initializing /data/qa-16915/m-01-488.ome.tif: [testng] [2024-05-17 08:39:57,128] [pool-1-thread-2] Initializing /data/aaron/L15_CTRL_FC1d_416_Da1.stk: [testng] [2024-05-17 08:39:57,435] [pool-1-thread-8] Initializing /data/imagesc-39526/bottom/956662_PVTom_L7day_4x_z10um_bottom_Region-1_nTiles-029_1_conf561_s1.stk: [testng] [2024-05-17 08:39:57,786] [pool-1-thread-6] Initializing /data/qa-16915/m-02-561.ome.tif: [testng] [2024-05-17 08:39:58,095] [pool-1-thread-10] Initializing /data/josh/EditedMovies/2101to600a.stk: [testng] [2024-05-17 08:40:00,553] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Full Confluency/Serum/Color Combine.tif: [testng] [2024-05-17 08:40:00,946] [pool-1-thread-4] Initializing /data/josh/2101to600f.stk: [testng] [2024-05-17 08:40:03,879] [pool-1-thread-2] Initializing /data/sebastian/CLC2_GFP root4/0.1% DMSO root4001.tif: [testng] [2024-05-17 08:40:04,414] [pool-1-thread-1] Initializing /data/grant/XYZCT_Image_w1FITC_t1.STK: [testng] [2024-05-17 08:40:04,963] [pool-1-thread-9] Initializing /data/tristan/data IJM/mw1_z/MDA_z_MW1(GFP)_w1GFP.TIF: [testng] [2024-05-17 08:40:05,045] [pool-1-thread-6] Initializing /data/sebastien-besson/new/D2Test/120711/120711_D2Test_001_w1DUAL 491-561.TIF: [testng] [2024-05-17 08:40:05,103] [pool-1-thread-3] Initializing /data/tristan/data IJM/tl_ z/MDA_TL_z_t1.TIF: [testng] [2024-05-17 08:40:05,286] [pool-1-thread-2] Initializing /data/samples/diatoms3d.stk: [testng] [2024-05-17 08:40:05,716] [pool-1-thread-2] Initializing /data/qa-16915/m-02.tif: [testng] [2024-05-17 08:40:06,681] [pool-1-thread-6] Initializing /data/chris/exp1_w2CSU RED_s3_t001.stk: [testng] [2024-05-17 08:40:06,879] [pool-1-thread-9] Initializing /data/samples/single-series-test/test_w1.TIF: [testng] [2024-05-17 08:40:07,342] [pool-1-thread-3] Initializing /data/doil/001-23 dapi.stk: [testng] [2024-05-17 08:40:09,198] [pool-1-thread-6] Initializing /data/qa-16915/m-04.tif: [testng] [2024-05-17 08:40:09,835] [pool-1-thread-9] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w3Filter TRITC.TIF: [testng] [2024-05-17 08:40:09,919] [pool-1-thread-1] Initializing /data/qa-16915/m-02-488.ome.tif: [testng] [2024-05-17 08:40:11,225] [pool-1-thread-2] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_2_w1Filter DAPI.TIF: [testng] [2024-05-17 08:40:11,615] [pool-1-thread-9] Initializing /data/jcb/201008090/3T3_ShhN_C_Nhh594.stk: [testng] [2024-05-17 08:40:12,298] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w1Filter DAPI.TIF: [testng] [2024-05-17 08:40:12,857] [pool-1-thread-6] Initializing /data/tristan/data IJM/mw2/MDA_mw2(GFP-RFP)_w1GFP.TIF: [testng] [2024-05-17 08:40:12,943] [pool-1-thread-9] Initializing /data/andressa/RPE/Sparse/Serum/Color Combine.tif: [testng] [2024-05-17 08:40:13,212] [pool-1-thread-2] Initializing /data/josh/EditedMovies/2101to400a.stk: [testng] [2024-05-17 08:40:14,109] [pool-1-thread-1] Initializing /data/josh/EditedMovies/2101to600f.stk: [testng] [2024-05-17 08:40:15,914] [pool-1-thread-6] Initializing /data/andressa/RPE/Full Confluency/Serum/Color Combine.tif: [testng] [2024-05-17 08:40:15,961] [pool-1-thread-9] Initializing /data/ascb/monopolar mt aim.tif: [testng] [2024-05-17 08:40:16,019] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w3Filter TRITC.TIF: [testng] [2024-05-17 08:40:16,958] [pool-1-thread-9] Initializing /data/ved/Expt01_w1CFP FRET-S ND0.5_t1.TIF: [testng] [2024-05-17 08:40:17,011] [pool-1-thread-6] Initializing /data/ascb/mt prc1 kif4.tif: [testng] [2024-05-17 08:40:17,079] [pool-1-thread-5] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s1_t2.TIF: [testng] [2024-05-17 08:40:17,157] [pool-1-thread-5] Used files list does not include base file [testng] [2024-05-17 08:40:17,320] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w1Filter DAPI.TIF: [testng] [2024-05-17 08:40:17,875] [pool-1-thread-6] Initializing /data/dave/Z Series.stk: [testng] [2024-05-17 08:40:18,211] [pool-1-thread-2] Initializing /data/andressa/RPE/Full Confluency/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-05-17 08:40:18,290] [pool-1-thread-10] Initializing /data/gh-2613/ScanSlide_exp1_rep1_w1confGFP_s1.stk: [testng] [2024-05-17 08:40:18,765] [pool-1-thread-6] Initializing /data/alex/13/LJN_Y1136_13_w2FITC_t2.STK: [testng] [2024-05-17 08:40:19,157] [pool-1-thread-9] Initializing /data/sebastien-besson/new/D2Test/120711/120711_D2_001_w1DUAL 491-561_t1.TIF: [testng] [2024-05-17 08:40:19,333] [pool-1-thread-6] Initializing 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Initializing /data/chris/exp1_w1_s1_t1.tif: [testng] [2024-05-17 08:40:35,759] [pool-1-thread-9] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w1Filter DAPI.TIF: [testng] [2024-05-17 08:40:36,899] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Sparse/Collagen/Color Combine.tif: [testng] [2024-05-17 08:40:37,004] [pool-1-thread-1] Initializing /data/fabrice/100722ac-2_w1RED_s1_t1.TIF: [testng] [2024-05-17 08:40:37,677] [pool-1-thread-9] Initializing /data/andressa/RPE/Full Confluency/Collagen/Color Combine 2.tif: [testng] [2024-05-17 08:40:37,808] [pool-1-thread-7] Initializing /data/josh/2101to600e.stk: [testng] [2024-05-17 08:40:38,912] [pool-1-thread-1] Initializing /data/jacek/YFP2trans.tif: [testng] [2024-05-17 08:40:39,218] [pool-1-thread-4] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge_contrast.tif: [testng] [2024-05-17 08:40:39,417] [pool-1-thread-6] Initializing /data/ascb/mt prc1 kif4 2.tif: [testng] [2024-05-17 08:40:39,783] [pool-1-thread-10] Initializing /data/andressa/RPE/Sparse/Serum/120806_2_w1Filter DAPI.TIF: [testng] [2024-05-17 08:40:41,305] [pool-1-thread-6] Initializing /data/stephane/Lame7-E5-Y+-001.stk: [testng] [2024-05-17 08:40:41,422] [pool-1-thread-8] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s1_t2.TIF: [testng] [2024-05-17 08:40:41,542] [pool-1-thread-8] Used files list does not include base file [testng] [2024-05-17 08:40:41,543] [pool-1-thread-9] Initializing /data/jcb/201008090/Color Combine.stk: [testng] [2024-05-17 08:40:41,651] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Sparse/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2024-05-17 08:40:42,807] [pool-1-thread-4] Initializing /data/lee/20130116-u2os-celldensitytest-72h-96h_m08_s9_w2766e46f1-81be-45a2-88b1-abe8da58c47a.tif: [testng] [2024-05-17 08:40:42,943] [pool-1-thread-10] Initializing /data/chris-de-graffenried/ND C4 488 PLK 5682_w1sRFP.stk: [testng] [2024-05-17 08:40:43,419] [pool-1-thread-6] Initializing /data/graham/G_Wright deconvolved.stk: [testng] [2024-05-17 08:40:44,783] [pool-1-thread-9] Initializing /data/sebastien-besson/new/120711_D2_001/120711_D2_001_w1DUAL 491-561_t1.TIF: [testng] [2024-05-17 08:40:44,947] [pool-1-thread-6] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t11_w2Laser4914BD4BP_OverView.tif: [testng] [2024-05-17 08:40:45,016] [pool-1-thread-6] Used files list does not include base file [testng] [2024-05-17 08:40:45,159] [pool-1-thread-1] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s2_t2.TIF: [testng] [2024-05-17 08:40:45,243] [pool-1-thread-1] Used files list does not include base file [testng] [2024-05-17 08:40:45,555] [pool-1-thread-4] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s2_t1.TIF: [testng] [2024-05-17 08:40:45,675] [pool-1-thread-4] Used files list does not include base file [testng] [2024-05-17 08:40:45,877] [pool-1-thread-6] Initializing /data/ascb/RNA dye MT 2.tif: [testng] [2024-05-17 08:40:46,275] [pool-1-thread-7] Initializing /data/alex/15/LJN_Y1136_15_w2DAPI_t2.STK: [testng] [2024-05-17 08:40:46,561] [pool-1-thread-10] Initializing /data/chris/test2_w2_s1_t2.stk: [testng] [2024-05-17 08:40:46,988] [pool-1-thread-8] Initializing /data/tristan/data IJM/mw3/MDA_MW3(GFP-RFP-GLP)_w1GFP.TIF: [testng] [2024-05-17 08:40:47,541] [pool-1-thread-7] Initializing /data/chris/exp1_w1CSU GREEN_s3_t001.stk: [testng] [2024-05-17 08:40:47,911] [pool-1-thread-10] Initializing /data/andressa/RPE/Sparse/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-05-17 08:40:48,064] [pool-1-thread-6] Initializing /data/heiko/sample_3x3.stk: [testng] [2024-05-17 08:40:48,546] [pool-1-thread-9] Initializing /data/ascb/mt aim.tif: [testng] [2024-05-17 08:40:49,400] [pool-1-thread-1] Initializing /data/sebastien-besson/001/120119_VimMito_001_w1DIC_t1.TIF: [testng] [2024-05-17 08:40:50,186] [pool-1-thread-7] Initializing 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/data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s1t41_w1Laser4054BD4BP_t1.stk: [testng] [2024-05-17 08:40:54,680] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w3Filter TRITC.TIF: [testng] [2024-05-17 08:40:54,873] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/Color Combine-2.tif: [testng] [2024-05-17 08:40:55,978] [pool-1-thread-9] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c1s1t1.tif: [testng] [2024-05-17 08:40:56,179] [pool-1-thread-6] Initializing /data/chris/Foo/exp1_w1_s1_t1.tif: [testng] [2024-05-17 08:41:01,452] [pool-1-thread-7] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s2_t1.TIF: [testng] [2024-05-17 08:41:01,528] [pool-1-thread-7] Used files list does not include base file [testng] [2024-05-17 08:41:01,529] [pool-1-thread-12] Initializing /data/thomas/t_test2001.tif: [testng] [2024-05-17 08:41:01,598] [pool-1-thread-4] Initializing /data/strand/TS_200nm_3_w2Fluo GFP -100-.TIF: [testng] [2024-05-17 08:41:01,667] [pool-1-thread-8] Initializing /data/grant/X.STK: [testng] [2024-05-17 08:41:01,905] [pool-1-thread-9] Initializing /data/andressa/RPE/Sparse/Fibronectin/Color Combine.tif: [testng] [2024-05-17 08:41:01,998] [pool-1-thread-10] Initializing /data/qa-16915/m-01.tif: [testng] [2024-05-17 08:41:03,425] [pool-1-thread-12] Initializing /data/bill/OX218B3/OX218B3_w1488nm- 30-_t1.STK: [testng] [2024-05-17 08:41:05,080] [pool-1-thread-4] Initializing /data/josh/EditedMovies/2101to800.stk: [testng] [2024-05-17 08:41:06,005] [pool-1-thread-7] Initializing /data/aaron/metamorph.stk: [testng] [2024-05-17 08:41:06,197] [pool-1-thread-9] Initializing /data/andressa/MCF-10A/Sparse/Fibronectin/Color Combine.tif: [testng] [2024-05-17 08:41:07,001] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w2Filter FITC.TIF: [testng] [2024-05-17 08:41:07,498] [pool-1-thread-7] Initializing /data/andressa/MCF-10A/Sparse/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-05-17 08:41:07,608] [pool-1-thread-9] Initializing /data/gh-2613/ScanSlide_exp1_rep0_w1confGFP_s1.tif: [testng] [2024-05-17 08:41:08,388] [pool-1-thread-8] Initializing /data/sebastien/GA-2222 raf-1_w2Mono 475 nm.STK: [testng] [2024-05-17 08:41:08,516] [pool-1-thread-10] Initializing /data/thomas/test.tif: [testng] [2024-05-17 08:41:09,092] [pool-1-thread-9] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w3Filter TRITC.jpg: [testng] [2024-05-17 08:41:09,479] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w3Filter TRITC.TIF: [testng] [2024-05-17 08:41:09,549] [pool-1-thread-4] Initializing /data/chris/exp1_w2CSU RED_s3_t002.stk: [testng] [2024-05-17 08:41:09,703] [pool-1-thread-7] Initializing /data/ascb/mt prc1 kif4 3.tif: [testng] [2024-05-17 08:41:09,927] [pool-1-thread-9] Initializing /data/ascb/mt racgap1 dna.tif: [testng] [2024-05-17 08:41:10,004] [pool-1-thread-10] Initializing /data/qa-16887/m-01.tif: [testng] [2024-05-17 08:41:11,068] [pool-1-thread-5] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s1t11_w1Laser4054BD4BP.stk: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 11077, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 20 minutes 56 seconds Finished: SUCCESS