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Started by upstream project "BIOFORMATS-test-repo" build number 66 originally caused by: Started by upstream project "Trigger" build number 74 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2 [BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins14026018611404912450.sh + '[' avi = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_9899_merge_ci -v /uod/idr/repos/curated/avi:/data -v /uod/idr-scratch/merge-ci/curated/avi:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 08:36:15,498 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 08:36:15,531 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 08:36:15,574 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 08:36:15,574 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 08:36:15,585 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 08:36:15,585 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 08:36:15,585 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 08:36:15,586 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 08:36:15,586 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5c30a9b0 - End of configuration. [testng] 08:36:15,587 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@7a69b07 - Registering current configuration as safe fallback point [testng] 08:36:15,587 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5e82df6a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 391 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-05-17 08:36:15,600] [main] java.version = 1.8.0_342 [testng] 08:36:15,605 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 08:36:15,605 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:36:15,679 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-05-17_08-36-15.log] [testng] 08:36:15,681 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-05-17 08:36:15,683] [main] testng.directory = /data [testng] [2024-05-17 08:36:15,683] [main] testng.configDirectory = /config [testng] [2024-05-17 08:36:15,709] [main] testng.multiplier = 1.0 [testng] [2024-05-17 08:36:15,710] [main] testng.in-memory = false [testng] [2024-05-17 08:36:15,710] [main] testng.allow-missing = false [testng] [2024-05-17 08:36:15,710] [main] user.language = en [testng] [2024-05-17 08:36:15,710] [main] user.country = ${user.country} [testng] [2024-05-17 08:36:15,710] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-05-17 08:36:16,850] [main] ---------------------------------------- [testng] [2024-05-17 08:36:16,850] [main] Total files: 40 [testng] [2024-05-17 08:36:16,850] [main] Scan time: 1.14 s (28 ms/file) [testng] [2024-05-17 08:36:16,850] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 38 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-05-17 08:40:39,294] [pool-1-thread-1] Initializing /data/roger/op9middle40x.lsm movie 4.avi: [testng] 08:40:39,296 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 08:40:39,297 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:40:39,301 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-05-17_08-40-39.log] [testng] 08:40:39,304 |-INFO in ch.qos.logback.core.sift.SiftProcessor@75b89ce6 - End of configuration. [testng] [2024-05-17 08:40:39,452] [pool-1-thread-12] Initializing /data/kurt/40x_6um_2.avi: [testng] 08:40:39,452 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 08:40:39,453 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:40:39,455 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-05-17_08-40-39.log] [testng] 08:40:39,456 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5975e07a - End of configuration. [testng] [2024-05-17 08:40:39,670] [pool-1-thread-11] Initializing /data/curtis/mri-stack-ij-old.avi: [testng] 08:40:39,670 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 08:40:39,670 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:40:39,672 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-05-17_08-40-39.log] [testng] 08:40:39,672 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7d7254df - End of configuration. [testng] [2024-05-17 08:40:39,745] [pool-1-thread-10] Initializing /data/roger/spheroid1-crop.lsm movie 2.avi: [testng] 08:40:39,746 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 08:40:39,746 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:40:39,748 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-05-17_08-40-39.log] [testng] 08:40:39,749 |-INFO in ch.qos.logback.core.sift.SiftProcessor@18d97de9 - End of configuration. [testng] [2024-05-17 08:40:39,955] [pool-1-thread-9] Initializing /data/sample-avis/rgb-odd-width/HyperStack.avi: [testng] 08:40:39,957 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 08:40:39,957 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:40:39,959 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-05-17_08-40-39.log] [testng] 08:40:39,960 |-INFO in ch.qos.logback.core.sift.SiftProcessor@52cd1b50 - End of configuration. [testng] [2024-05-17 08:40:39,978] [pool-1-thread-8] Initializing /data/chris/APZ04_009.avi: [testng] 08:40:39,980 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 08:40:39,980 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:40:39,983 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-05-17_08-40-39.log] [testng] 08:40:39,985 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7c773970 - End of configuration. [testng] [2024-05-17 08:40:47,588] [pool-1-thread-7] Initializing /data/qa-7560/Ex9 ALADIN WT KO KI_DIC_ 31_07_2013_M1.avi: [testng] 08:40:47,588 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 08:40:47,588 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:40:47,589 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-05-17_08-40-47.log] [testng] 08:40:47,590 |-INFO in ch.qos.logback.core.sift.SiftProcessor@501f2b62 - End of configuration. [testng] [2024-05-17 08:40:48,847] [pool-1-thread-6] Initializing /data/prairie/cornea dc and macs.AVI: [testng] 08:40:48,849 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 08:40:48,849 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:40:48,851 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-05-17_08-40-48.log] [testng] 08:40:48,852 |-INFO in ch.qos.logback.core.sift.SiftProcessor@16f0d4ca - End of configuration. [testng] [2024-05-17 08:40:49,057] [pool-1-thread-5] Initializing /data/jcb/JCB 201203159/JCB_201203159_0_5.avi: [testng] 08:40:49,058 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 08:40:49,058 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:40:49,060 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-05-17_08-40-49.log] [testng] 08:40:49,061 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1aadebb7 - End of configuration. [testng] [2024-05-17 08:40:49,249] [pool-1-thread-4] Initializing /data/chip_avi/Level002-DB-090.avi: [testng] 08:40:49,250 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 08:40:49,250 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:40:49,251 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-05-17_08-40-49.log] [testng] 08:40:49,252 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6adb2dda - End of configuration. [testng] [2024-05-17 08:40:49,297] [pool-1-thread-3] Initializing /data/qa-5019/nemo-2_1_.avi: [testng] 08:40:49,298 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 08:40:49,299 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:40:49,300 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-05-17_08-40-49.log] [testng] 08:40:49,301 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7eb9342d - End of configuration. [testng] [2024-05-17 08:40:49,516] [pool-1-thread-2] Initializing /data/qa-7450/MVI_3610.AVI: [testng] 08:40:49,516 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 08:40:49,517 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:40:49,517 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-05-17_08-40-49.log] [testng] 08:40:49,518 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3d5b3039 - End of configuration. [testng] [2024-05-17 08:40:53,170] [pool-1-thread-5] Initializing /data/sample-avis/extra-chunk/HyperStack.avi: [testng] [2024-05-17 08:40:53,179] [pool-1-thread-9] Initializing /data/qa-4232/11051920xdrywithincubatoronthenoff_Subset.avi: [testng] [2024-05-17 08:40:53,227] [pool-1-thread-11] Initializing /data/kurt/63x_6um.avi: [testng] [2024-05-17 08:40:53,841] [pool-1-thread-3] Initializing /data/chip_avi/Level004-WA-116.avi: [testng] [2024-05-17 08:40:53,898] [pool-1-thread-1] Initializing /data/jules/GUV_long15N_10_20mb_debut_25102011_1_BW.avi: [testng] [2024-05-17 08:40:54,105] [pool-1-thread-4] Initializing /data/william/worm.avi: [testng] [2024-05-17 08:40:54,124] [pool-1-thread-2] Initializing /data/roger/op9middle40x.lsm movie.avi: [testng] [2024-05-17 08:40:54,684] [pool-1-thread-5] Initializing /data/roger/op9middle40x.lsm movie 2.avi: [testng] [2024-05-17 08:40:54,966] [pool-1-thread-6] Initializing /data/ascb/TIRF.avi: [testng] [2024-05-17 08:40:55,897] [pool-1-thread-4] Initializing /data/pki/yinghua_USPI2-ASMKT772_111017100001_C10_f1.avi: [testng] [2024-05-17 08:40:56,445] [pool-1-thread-10] Initializing /data/jcb/JCB 201203159/JCB_201203159_0_4.avi: [testng] [2024-05-17 08:40:56,508] [pool-1-thread-3] Initializing /data/qa-11011/M-flow10001.avi: [testng] [2024-05-17 08:40:57,043] [pool-1-thread-12] Initializing /data/jules/GUV_long15N_10_10mb_debut_26102011_4.avi: [testng] [2024-05-17 08:41:46,650] [pool-1-thread-9] Initializing /data/simon/24_bit_problem.avi: [testng] [2024-05-17 08:41:47,239] [pool-1-thread-1] Initializing /data/chip_avi/Level001-ES-083.avi: [testng] [2024-05-17 08:41:47,508] [pool-1-thread-10] Initializing /data/kurt/40x_6um.avi: [testng] [2024-05-17 08:41:47,979] [pool-1-thread-7] Initializing /data/curtis/mri-stack-bf.avi: [testng] [2024-05-17 08:41:48,159] [pool-1-thread-2] Initializing /data/jcb/JCB 201203159/JCB_201203159_0_3.avi: [testng] [2024-05-17 08:41:48,205] [pool-1-thread-11] Initializing /data/roger/op9middle40x.lsm movie 3.avi: [testng] [2024-05-17 08:41:48,679] [pool-1-thread-5] Initializing /data/chip_avi/Level003-DB-089.avi: [testng] [2024-05-17 08:41:49,216] [pool-1-thread-1] Initializing /data/roger/spheroid1-crop.lsm movie.avi: [testng] [2024-05-17 08:41:49,708] [pool-1-thread-4] Initializing /data/jae/20xD_5minfor14h.avi: [testng] [2024-05-17 08:41:50,544] [pool-1-thread-9] Initializing /data/curtis/mri-stack-ij-new.avi: [testng] [2024-05-17 08:41:50,608] [pool-1-thread-2] Initializing /data/qa-7336/2X_63X-DAPI-Emilin2_Filter_Render_Series.avi: [testng] [2024-05-17 08:41:52,097] [pool-1-thread-7] Initializing /data/roger/spheroid1.lsm movie.avi: [testng] [2024-05-17 08:41:52,448] [pool-1-thread-6] Initializing /data/qa-5019/nemo-2_10_20.avi: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 2014, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 7 minutes 1 second Finished: SUCCESS