12:18:12Started by upstream project "Trigger" build number 512:18:12originally caused by:
12:18:12 Started by user devspace12:18:12Running as SYSTEM
12:18:12Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
12:18:12The recommended git tool is: NONE
12:18:12No credentials specified
12:18:12Cloning the remote Git repository
12:18:12Cloning repository https://github.com/snoopycrimecop/openmicroscopy.git12:18:12 > git init /home/omero/workspace/OMERO-build/src # timeout=10
12:18:12Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git12:18:12 > git --version # timeout=10
12:18:12 > git --version # 'git version 2.52.0'
12:18:12 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
12:21:27 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
12:21:27 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10
12:21:27Avoid second fetch
12:21:27 > git rev-parse origin/merge_ci^{commit} # timeout=10
12:21:27Checking out Revision cc67600ce04c4dc557e74556cb7395eac177132a (origin/merge_ci)
12:21:27 > git config core.sparsecheckout # timeout=10
12:21:27 > git checkout -f cc67600ce04c4dc557e74556cb7395eac177132a # timeout=10
12:21:38Commit message: "Add version.properties to etc/omero.properties"
12:21:38First time build. Skipping changelog.
12:21:38Cleaning workspace
12:21:38 > git rev-parse --verify HEAD # timeout=10
12:21:38Resetting working tree
12:21:38 > git reset --hard # timeout=10
12:21:38 > git clean -fdx # timeout=10
12:21:39Copied 6 artifacts from "OMERO-python-superbuild-build" build number 112:21:39[OMERO-build] $ /bin/bash -xe /tmp/jenkins3892844553441812900.sh
12:21:39+ mv omero-scripts/dist/omero_scripts-5.10.1.dev0.tar.gz .
12:21:39+ cd src
12:21:39+ export OMERO_BRANCH=merge_ci
12:21:39+ OMERO_BRANCH=merge_ci
12:21:39+ OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
12:21:39+ rm -rf /home/omero/workspace/OMERO-build/omero-virtualenv
12:21:39+ source /home/omero/settings.env
12:21:39++ OMERO_DB_HOST=pg
12:21:39++ OMERO_DB_USER=postgres
12:21:39++ OMERO_DB_PASS=
12:21:39++ OMERO_ROOT_PASS=omero
12:21:39++ OMERO_DATA_DIR=/OMERO
12:21:39++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
12:21:39+ python3.11 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
12:21:59+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl12:22:00Collecting zeroc-ice==3.6.5
12:22:01 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
12:22:03 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 16.2 MB/s eta 0:00:00
12:22:03Installing collected packages: zeroc-ice
12:22:06Successfully installed zeroc-ice-3.6.5
12:22:0712:22:07[notice] A new release of pip available: 22.3.1 -> 26.1.2
12:22:07[notice] To update, run: python3.11 -m pip install --upgrade pip
12:22:07+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U 'setuptools<66' omero-py
12:22:08Requirement already satisfied: setuptools<66 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (65.5.1)
12:22:08Collecting setuptools<66
12:22:08 Downloading setuptools-65.7.0-py3-none-any.whl (1.2 MB)
12:22:08 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.2/1.2 MB 9.7 MB/s eta 0:00:00
12:22:08Collecting omero-py
12:22:08 Downloading omero_py-5.22.1-py3-none-any.whl (2.8 MB)
12:22:09 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 2.8/2.8 MB 17.8 MB/s eta 0:00:00
12:22:09Collecting appdirs
12:22:09 Downloading appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
12:22:09Collecting future
12:22:09 Downloading future-1.0.0-py3-none-any.whl (491 kB)
12:22:09 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 491.3/491.3 kB 8.5 MB/s eta 0:00:00
12:22:09Collecting numpy<3,>=2
12:22:09 Downloading numpy-2.4.6-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB)
12:22:10 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 16.9/16.9 MB 17.5 MB/s eta 0:00:00
12:22:11Collecting Pillow>=10.0.0
12:22:11 Downloading pillow-12.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (6.9 MB)
12:22:11 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 6.9/6.9 MB 19.8 MB/s eta 0:00:00
12:22:11Collecting PyYAML
12:22:11 Downloading pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB)
12:22:12 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 806.6/806.6 kB 12.2 MB/s eta 0:00:00
12:22:12Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (from omero-py) (3.6.5)
12:22:12Collecting requests
12:22:12 Using cached requests-2.34.2-py3-none-any.whl (73 kB)
12:22:12Collecting portalocker
12:22:12 Downloading portalocker-3.2.0-py3-none-any.whl (22 kB)
12:22:12Collecting charset_normalizer<4,>=2
12:22:12 Using cached charset_normalizer-3.4.7-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (214 kB)
12:22:12Collecting idna<4,>=2.5
12:22:12 Using cached idna-3.18-py3-none-any.whl (65 kB)
12:22:13Collecting urllib3<3,>=1.26
12:22:13 Using cached urllib3-2.7.0-py3-none-any.whl (131 kB)
12:22:13Collecting certifi>=2023.5.7
12:22:13 Using cached certifi-2026.6.17-py3-none-any.whl (133 kB)
12:22:13Installing collected packages: appdirs, urllib3, setuptools, PyYAML, portalocker, Pillow, numpy, idna, future, charset_normalizer, certifi, requests, omero-py
12:22:14 Attempting uninstall: setuptools
12:22:14 Found existing installation: setuptools 65.5.1
12:22:15 Uninstalling setuptools-65.5.1:
12:22:15 Successfully uninstalled setuptools-65.5.1
12:23:07Successfully installed Pillow-12.3.0 PyYAML-6.0.3 appdirs-1.4.4 certifi-2026.6.17 charset_normalizer-3.4.7 future-1.0.0 idna-3.18 numpy-2.4.6 omero-py-5.22.1 portalocker-3.2.0 requests-2.34.2 setuptools-65.7.0 urllib3-2.7.0
12:23:0712:23:07[notice] A new release of pip available: 22.3.1 -> 26.1.2
12:23:07[notice] To update, run: python3.11 -m pip install --upgrade pip
12:23:07+ source /home/omero/workspace/OMERO-build/omero-virtualenv/bin/activate
12:23:07++ deactivate nondestructive
12:23:07++ '[' -n '' ']'
12:23:07++ '[' -n '' ']'
12:23:07++ hash -r
12:23:07++ '[' -n '' ']'
12:23:07++ unset VIRTUAL_ENV
12:23:07++ unset VIRTUAL_ENV_PROMPT
12:23:07++ '[' '!' nondestructive = nondestructive ']'
12:23:07++ VIRTUAL_ENV=/home/omero/workspace/OMERO-build/omero-virtualenv
12:23:07++ export VIRTUAL_ENV
12:23:07++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
12:23:07++ PATH=/home/omero/workspace/OMERO-build/omero-virtualenv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
12:23:07++ export PATH
12:23:07++ '[' -n '' ']'
12:23:07++ '[' -z '' ']'
12:23:07++ _OLD_VIRTUAL_PS1=
12:23:07++ PS1='(omero-virtualenv) '
12:23:07++ export PS1
12:23:07++ VIRTUAL_ENV_PROMPT='(omero-virtualenv) '
12:23:07++ export VIRTUAL_ENV_PROMPT
12:23:07++ hash -r
12:23:07+ source docs/hudson/OMERO.sh
12:23:07++ set -e
12:23:07++ set -u
12:23:07++ set -x
12:23:07++ source docs/hudson/functions.sh
12:23:07++ echo Building merge_ci
12:23:07Building merge_ci
12:23:07++ python3 ./build.py build-dev release-all
12:23:07Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
12:23:0912:23:09check-ivy:
12:23:09Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
12:23:09Created dir: /home/omero/workspace/OMERO-build/src/target
12:23:09:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
12:23:09:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
12:23:1012:23:10build-scons:
12:23:10Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
12:23:12No sub-builds to iterate on
12:23:12Entering /home/omero/workspace/OMERO-build/src/components/tools...
12:23:1212:23:12buildlist:
12:23:12:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
12:23:12:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
12:23:1312:23:13clean:
12:23:13Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
12:23:13Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
12:23:1312:23:13python-clean:
12:23:13WARNING: '' not a valid package name; please use only .-separated package names in setup.py
12:23:13/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-622-cc67600ce0-ice36-b1') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
12:23:13 warnings.warn(
12:23:13running clean
12:23:14Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
12:23:14Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
12:23:1412:23:14python-clean:
12:23:14WARNING: '' not a valid package name; please use only .-separated package names in setup.py
12:23:14/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-622-cc67600ce0-ice36-b1') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
12:23:14 warnings.warn(
12:23:14running clean
12:23:14Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
12:23:15Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
12:23:15Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
12:23:15Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
12:23:1612:23:16python-clean:
12:23:16WARNING: '' not a valid package name; please use only .-separated package names in setup.py
12:23:16/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-622-cc67600ce0-ice36-b1') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
12:23:16 warnings.warn(
12:23:16running clean
12:23:16Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
12:23:16Deleting directory /home/omero/workspace/OMERO-build/src/target
12:23:1712:23:17build-scons:
12:23:17Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
12:23:1812:23:18build:
12:23:18No sub-builds to iterate on
12:23:18Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
12:23:19Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
12:23:19Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
12:23:19Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
12:23:1912:23:19tools-init:
12:23:19no-op
12:23:2012:23:20retrieve:
12:23:20:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
12:23:20:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
12:28:1812:28:18prepare:
12:28:18Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
12:28:18Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
12:28:18Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
12:28:18Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
12:28:18Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
12:28:18Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
12:28:18Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
12:28:18Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
12:28:18Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
12:28:18Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
12:28:18Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
12:28:18Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
12:28:18Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
12:28:18Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
12:28:18Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
12:28:1812:28:18pre-compile:
12:28:18Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
12:28:20Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
12:28:28Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
12:28:33Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
12:28:33Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
12:28:3612:28:36compile:
12:28:36no-op
12:28:3612:28:36package:
12:28:36Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
12:28:4012:28:40install:
12:28:40:: delivering :: omero#omero_client;working@03fd9c56c5e9 :: 5.6.3-622-cc67600ce0-ice36-b1 :: integration :: Tue Jul 07 12:23:19 UTC 2026
12:28:40 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
12:28:40:: publishing :: omero#omero_client
12:28:40 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-622-cc67600ce0-ice36-b1/omero_client-5.6.3-622-cc67600ce0-ice36-b1.jar
12:28:40 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-622-cc67600ce0-ice36-b1/omero_client-5.6.3-622-cc67600ce0-ice36-b1.xml
12:28:41Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
12:28:41Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
12:28:4112:28:41retrieve:
12:28:41:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
12:28:41:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
12:28:42Entering /home/omero/workspace/OMERO-build/src/components/tools...
12:28:4212:28:42dist:
12:28:42Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
12:28:42Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
12:28:42Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
12:28:42Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.10.1.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
12:28:42Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
12:28:43Copying 29 files to /home/omero/workspace/OMERO-build/src/dist
12:28:43Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
12:28:44Entering /home/omero/workspace/OMERO-build/src/components/tests...
12:28:44Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
12:28:4512:28:45copy-licenses:
12:28:45Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
12:28:45Created dir: /home/omero/workspace/OMERO-build/src/dist/share
12:28:45Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
12:28:4512:28:45copy-history:
12:28:45Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
12:28:4512:28:45copy-etc:
12:28:45Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
12:28:45Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
12:28:4612:28:46copy-sql:
12:28:46Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
12:29:4012:29:40copy-server:
12:29:40 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.1.9 won
12:29:4512:29:45copy-client:
12:29:45Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
12:29:50 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.1.9 won
12:29:5412:29:54update-version:
12:29:54Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
12:29:5412:29:54create-workdirs:
12:29:54Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
12:29:54Created dir: /home/omero/workspace/OMERO-build/src/dist/var
12:29:54Created dir: /home/omero/workspace/OMERO-build/src/dist/var/tmp
12:29:5412:29:54copy-luts:
12:29:54Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
12:29:54Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
12:29:5412:29:54test-compile:
12:29:54:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
12:29:55Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
12:29:55Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
12:29:55Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
12:29:55Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
12:29:56Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
12:29:56Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
12:29:56Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
12:29:5712:29:57testng-init:
12:29:57:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
12:29:57:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
12:30:2112:30:21,315 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.16
12:30:2112:30:21,318 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d931617 - No custom configurators were discovered as a service.
12:30:2112:30:21,318 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d931617 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
12:30:2112:30:21,322 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d931617 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
12:30:2112:30:21,325 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
12:30:2112:30:21,326 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
12:30:2112:30:21,327 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d931617 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 5 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
12:30:2112:30:21,327 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d931617 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
12:30:2112:30:21,329 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d931617 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
12:30:2112:30:21,332 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
12:30:2112:30:21,333 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
12:30:2112:30:21,335 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@47786165 - Resource [logback.xml] occurs multiple times on the classpath.
12:30:2112:30:21,335 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@47786165 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
12:30:2112:30:21,335 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@47786165 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
12:30:2112:30:21,571 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
12:30:2112:30:21,571 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
12:30:2112:30:21,593 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
12:30:2112:30:21,595 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@7aa8801d - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
12:30:2112:30:21,595 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@7aa8801d - Please move "immediateFlush" property into the enclosing appender.
12:30:2112:30:21,669 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@7aa8801d - Setting the "immediateFlush" property of the enclosing appender to true
12:30:2112:30:21,670 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
12:30:2112:30:21,670 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
12:30:2112:30:21,670 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
12:30:2112:30:21,670 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
12:30:2112:30:21,670 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
12:30:2112:30:21,670 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
12:30:2112:30:21,671 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@53cd2763 - End of configuration.
12:30:2112:30:21,674 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@46fbb0a3 - Registering current configuration as safe fallback point
12:30:2112:30:21,674 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d931617 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 345 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
12:30:2112:30:21lifecycle.test-compile:
12:30:21Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
12:30:21Compiling 86 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
12:30:22warning: [options] bootstrap class path not set in conjunction with -source 8
12:30:22warning: [options] source value 8 is obsolete and will be removed in a future release
12:30:22warning: [options] target value 8 is obsolete and will be removed in a future release
12:30:22warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
12:30:24/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
12:30:24import omero.grid.RawAccessRequest;
12:30:24 ^
12:30:24/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
12:30:24import omero.grid.RawAccessRequest;
12:30:24 ^
12:30:24/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
12:30:24import omero.grid.RawAccessRequest;
12:30:24 ^
12:30:24/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
12:30:24import omero.model.ImportJob;
12:30:24 ^
12:30:24/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
12:30:24import omero.model.ImportJobI;
12:30:24 ^
12:30:25/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1207: warning: [deprecation] newInstance() in Class has been deprecated
12:30:25 IObject link = (IObject) linkClass.newInstance();
12:30:25 ^
12:30:25 where T is a type-variable:
12:30:25 T extends Object declared in class Class
12:30:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
12:30:26 T copy = (T) obj.getClass().newInstance();
12:30:26 ^
12:30:26 where T is a type-variable:
12:30:26 T extends Object declared in class Class
12:30:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
12:30:26 RawAccessRequest raw = new RawAccessRequest();
12:30:26 ^
12:30:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
12:30:26 RawAccessRequest raw = new RawAccessRequest();
12:30:26 ^
12:30:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
12:30:26 raw.repoUuid = legacy.root().getHash().getValue();
12:30:26 ^
12:30:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
12:30:26 raw.command = "rm";
12:30:26 ^
12:30:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
12:30:26 raw.args = Arrays.asList(path);
12:30:26 ^
12:30:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
12:30:26 final IObject link = linkClass.newInstance();
12:30:26 ^
12:30:26 where T is a type-variable:
12:30:26 T extends Object declared in class Class
12:30:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
12:30:26 originalLink.setChild(annotationClass.newInstance());
12:30:26 ^
12:30:26 where T is a type-variable:
12:30:26 T extends Object declared in class Class
12:30:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
12:30:26 RoiResult r = svc.findByImage(id, new RoiOptions());
12:30:26 ^
12:30:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
12:30:27 final RawAccessRequest request = new RawAccessRequest();
12:30:27 ^
12:30:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
12:30:27 final RawAccessRequest request = new RawAccessRequest();
12:30:27 ^
12:30:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
12:30:27 request.repoUuid = repo.root().getHash().getValue();
12:30:27 ^
12:30:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
12:30:27 request.command = "exists";
12:30:27 ^
12:30:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
12:30:27 request.args = Collections.singletonList(dirPath);
12:30:27 ^
12:30:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
12:30:27 final RawAccessRequest request = new RawAccessRequest();
12:30:27 ^
12:30:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
12:30:27 final RawAccessRequest request = new RawAccessRequest();
12:30:27 ^
12:30:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
12:30:27 request.repoUuid = repo.root().getHash().getValue();
12:30:27 ^
12:30:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
12:30:27 request.command = "exists";
12:30:27 ^
12:30:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
12:30:27 request.args = Collections.singletonList(dirName);
12:30:27 ^
12:30:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactoryTest.java:60: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
12:30:27 RoiResult result = roiSvc.findByImage(imageId, new RoiOptions());
12:30:27 ^
12:30:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
12:30:27 final ImportJob importJob = new ImportJobI();
12:30:27 ^
12:30:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
12:30:27 final ImportJob importJob = new ImportJobI();
12:30:27 ^
12:30:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
12:30:27 importJob.setImageName(omero.rtypes.rstring(name));
12:30:27 ^
12:30:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
12:30:27 importJob.setImageDescription(omero.rtypes.rstring(desc));
12:30:27 ^
12:30:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
12:30:27 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
12:30:27 ^
12:30:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
12:30:27 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
12:30:27 ^
12:30:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
12:30:27 final String savedName = sent.getImageName().getValue().toString();
12:30:27 ^
12:30:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
12:30:27 final String savedDesc = sent.getImageDescription().getValue().toString();
12:30:27 ^
12:30:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
12:30:27 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
12:30:27 ^
12:30:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
12:30:27 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
12:30:27 ^
12:30:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
12:30:27 final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
12:30:27 ^
12:30:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
12:30:27 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
12:30:27 ^
12:30:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
12:30:27 RoiResult r = svc.findByImage(image.getId().getValue(),
12:30:27 ^
12:30:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
12:30:27 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
12:30:27 ^
12:30:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
12:30:27 l = svc.getRoiMeasurements(image.getId().getValue(), options);
12:30:27 ^
12:30:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
12:30:27 l = svc.getRoiMeasurements(image.getId().getValue(), options);
12:30:27 ^
12:30:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
12:30:27 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
12:30:27 ^
12:30:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
12:30:27 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
12:30:27 ^
12:30:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
12:30:27 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
12:30:27 ^
12:30:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
12:30:27 table = svc.getTable(f.getId().getValue());
12:30:27 ^
12:30:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
12:30:27 RoiResult r = svc.findByImage(image.getId().getValue(),
12:30:27 ^
12:30:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
12:30:27 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
12:30:27 ^
12:30:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
12:30:27 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
12:30:27 ^
12:30:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
12:30:27 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
12:30:27 ^
12:30:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
12:30:27 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
12:30:27 ^
12:30:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
12:30:27 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
12:30:27 ^
12:30:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
12:30:27 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
12:30:27 ^
12:30:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
12:30:27 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
12:30:27 ^
12:30:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
12:30:27 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
12:30:27 ^
12:30:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Long(long) in Long has been deprecated and marked for removal
12:30:27 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
12:30:27 ^
12:30:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
12:30:27 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
12:30:27 ^
12:30:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
12:30:27 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
12:30:27 ^
12:30:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
12:30:27 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
12:30:27 ^
12:30:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
12:30:27 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
12:30:27 ^
12:30:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
12:30:27 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
12:30:27 ^
12:30:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
12:30:27 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
12:30:27 ^
12:30:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
12:30:27 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
12:30:27 ^
12:30:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
12:30:27 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
12:30:27 ^
12:30:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
12:30:27 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
12:30:27 ^
12:30:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
12:30:27 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
12:30:27 ^
12:30:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
12:30:27 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
12:30:27 ^
12:30:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
12:30:27 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
12:30:27 ^
12:30:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
12:30:27 svc.getShapeStatsRestricted(
12:30:27 ^
12:30:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
12:30:27 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
12:30:27 ^
12:30:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
12:30:28 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
12:30:28 ^
12:30:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
12:30:28 request.typesToIgnore = Collections.singletonList("TagAnnotation");
12:30:28 ^
12:30:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
12:30:28 request.typesToIgnore = Collections.singletonList("IAnnotationLink");
12:30:28 ^
12:30:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
12:30:28 request.typesToIgnore = Collections.singletonList("Annotation");
12:30:28 ^
12:30:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
12:30:28 request.typesToIgnore = Collections.singletonList("Annotation");
12:30:28 ^
12:30:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
12:30:28 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
12:30:28 ^
12:30:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
12:30:28 p2.setRelatedTo(p1);
12:30:28 ^
12:30:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
12:30:28 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
12:30:28 ^
12:30:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
12:30:28 pixels1.setRelatedTo(pixels2);
12:30:28 ^
12:30:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
12:30:28 Pixels pixels = pixels1.getRelatedTo();
12:30:28 ^
12:30:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
12:30:28 Assert.assertNull(pixels1.getRelatedTo());
12:30:28 ^
12:30:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
12:30:28 pixels1.setRelatedTo(pixels2);
12:30:28 ^
12:30:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
12:30:28 Pixels pixels = pixels1.getRelatedTo();
12:30:28 ^
12:30:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
12:30:28 Assert.assertNull(pixels1.getRelatedTo());
12:30:28 ^
12:30:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
12:30:28 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
12:30:28 ^
12:30:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
12:30:28 l = svc.getRoiMeasurements(image.getId().getValue(), options);
12:30:28 ^
12:30:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
12:30:28 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
12:30:28 ^
12:30:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
12:30:28 l = svc.getRoiMeasurements(image.getId().getValue(), options);
12:30:28 ^
12:30:28Note: Some input files use unchecked or unsafe operations.
12:30:28Note: Recompile with -Xlint:unchecked for details.
12:30:2892 warnings
12:30:29Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_1316235112.tmp
12:30:29Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar
12:30:29:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
12:30:29:: delivering :: omero#OmeroJava-test;working@03fd9c56c5e9 :: 5.6.3-622-cc67600ce0-ice36-b1 :: integration :: Tue Jul 07 12:29:56 UTC 2026
12:30:29 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml
12:30:29:: publishing :: omero#OmeroJava-test
12:30:29 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-622-cc67600ce0-ice36-b1.jar
12:30:29 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-622-cc67600ce0-ice36-b1.xml
12:30:2912:30:29build-eclipse:
12:30:29No sub-builds to iterate on
12:30:29Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
12:30:3012:30:30retrieve:
12:30:30:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
12:30:30:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
12:30:3412:30:34prepare:
12:30:34Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
12:30:3912:30:39release-clients:
12:30:39Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-622-cc67600ce0-ice36-b1.zip
12:30:4412:30:44release-zip:
12:30:44Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-622-cc67600ce0-ice36-b1.zip
12:30:5612:30:56BUILD SUCCESSFUL
12:30:56Total time: 7 minutes 48 seconds
12:30:56++ '[' -d .git ']'
12:30:56++ python3 ./build.py release-src
12:30:57Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
12:30:5812:30:58release-src-git:
12:30:58Releasing openmicroscopy-5.6.3-622-cc67600ce0-ice36-b1
12:30:59 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-622-cc67600ce0-ice36-b1.zip
12:30:59 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-622-cc67600ce0-ice36-b1-base.zip
12:31:0112:31:01BUILD SUCCESSFUL
12:31:01Total time: 4 seconds
12:31:01++ echo BUILD_NUMBER=1
12:31:01++ echo OMERO_BRANCH=merge_ci
12:31:01++ git_info
12:31:01+++ git rev-parse HEAD
12:31:01++ HEAD=cc67600ce04c4dc557e74556cb7395eac177132a
12:31:01++ git log --max-count=1 cc67600ce04c4dc557e74556cb7395eac177132a
12:31:01++ env
12:31:01++ sort
12:31:01Archiving artifacts
12:31:18Finished: SUCCESS
