20:55:54Started by upstream project "Trigger" build number 320:55:54originally caused by:
20:55:54 Started by user devspace20:55:54Running as SYSTEM
20:55:54Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
20:55:54The recommended git tool is: NONE
20:55:54No credentials specified
20:55:54Cloning the remote Git repository
20:55:54Cloning repository https://github.com/snoopycrimecop/openmicroscopy.git20:55:54 > git init /home/omero/workspace/OMERO-build/src # timeout=10
20:55:54Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git20:55:54 > git --version # timeout=10
20:55:54 > git --version # 'git version 2.47.3'
20:55:54 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
20:58:10 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
20:58:10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10
20:58:10Avoid second fetch
20:58:10 > git rev-parse origin/merge_ci^{commit} # timeout=10
20:58:10Checking out Revision 82ef22269e0b990c811b449b18e0c2dd42d6d05f (origin/merge_ci)
20:58:10 > git config core.sparsecheckout # timeout=10
20:58:10 > git checkout -f 82ef22269e0b990c811b449b18e0c2dd42d6d05f # timeout=10
20:58:10Commit message: "Add version.properties to etc/omero.properties"
20:58:10First time build. Skipping changelog.
20:58:10Cleaning workspace
20:58:10 > git rev-parse --verify HEAD # timeout=10
20:58:10Resetting working tree
20:58:10 > git reset --hard # timeout=10
20:58:10 > git clean -fdx # timeout=10
20:58:10Copied 6 artifacts from "OMERO-python-superbuild-build" build number 120:58:11[OMERO-build] $ /bin/bash -xe /tmp/jenkins9440521228261386544.sh
20:58:11+ mv omero-scripts/dist/omero_scripts-5.9.2.dev0.tar.gz .
20:58:11+ cd src
20:58:11+ export OMERO_BRANCH=merge_ci
20:58:11+ OMERO_BRANCH=merge_ci
20:58:11+ OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
20:58:11+ rm -rf /home/omero/workspace/OMERO-build/omero-virtualenv
20:58:11+ source /home/omero/settings.env
20:58:11++ OMERO_DB_HOST=pg
20:58:11++ OMERO_DB_USER=postgres
20:58:11++ OMERO_DB_PASS=
20:58:11++ OMERO_ROOT_PASS=omero
20:58:11++ OMERO_DATA_DIR=/OMERO
20:58:11++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
20:58:11+ python3.11 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
20:58:14+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl20:58:14Collecting zeroc-ice==3.6.5
20:58:15 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
20:58:16 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 17.9 MB/s eta 0:00:00
20:58:17Installing collected packages: zeroc-ice
20:58:17Successfully installed zeroc-ice-3.6.5
20:58:1820:58:18[notice] A new release of pip available: 22.3.1 -> 25.3
20:58:18[notice] To update, run: python3.11 -m pip install --upgrade pip
20:58:18+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U 'setuptools<66' omero-py
20:58:18Requirement already satisfied: setuptools<66 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (65.5.1)
20:58:18Collecting setuptools<66
20:58:18 Downloading setuptools-65.7.0-py3-none-any.whl (1.2 MB)
20:58:18 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.2/1.2 MB 15.6 MB/s eta 0:00:00
20:58:19Collecting omero-py
20:58:19 Downloading omero_py-5.21.3-py3-none-any.whl (2.8 MB)
20:58:19 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 2.8/2.8 MB 23.3 MB/s eta 0:00:00
20:58:19Collecting appdirs
20:58:19 Downloading appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
20:58:19Collecting future
20:58:19 Downloading future-1.0.0-py3-none-any.whl (491 kB)
20:58:19 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 491.3/491.3 kB 30.7 MB/s eta 0:00:00
20:58:19Collecting numpy<3
20:58:19 Downloading numpy-2.3.5-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB)
20:58:20 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 16.9/16.9 MB 22.1 MB/s eta 0:00:00
20:58:21Collecting Pillow>=10.0.0
20:58:21 Downloading pillow-12.0.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (7.0 MB)
20:58:21 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 7.0/7.0 MB 22.9 MB/s eta 0:00:00
20:58:21Collecting PyYAML
20:58:21 Downloading pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB)
20:58:21 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 806.6/806.6 kB 21.5 MB/s eta 0:00:00
20:58:21Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (from omero-py) (3.6.5)
20:58:21Collecting requests
20:58:21 Using cached requests-2.32.5-py3-none-any.whl (64 kB)
20:58:21Collecting portalocker
20:58:21 Downloading portalocker-3.2.0-py3-none-any.whl (22 kB)
20:58:21Collecting charset_normalizer<4,>=2
20:58:21 Using cached charset_normalizer-3.4.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (151 kB)
20:58:22Collecting idna<4,>=2.5
20:58:22 Using cached idna-3.11-py3-none-any.whl (71 kB)
20:58:22Collecting urllib3<3,>=1.21.1
20:58:22 Using cached urllib3-2.6.2-py3-none-any.whl (131 kB)
20:58:22Collecting certifi>=2017.4.17
20:58:22 Using cached certifi-2025.11.12-py3-none-any.whl (159 kB)
20:58:22Installing collected packages: appdirs, urllib3, setuptools, PyYAML, portalocker, Pillow, numpy, idna, future, charset_normalizer, certifi, requests, omero-py
20:58:22 Attempting uninstall: setuptools
20:58:22 Found existing installation: setuptools 65.5.1
20:58:22 Uninstalling setuptools-65.5.1:
20:58:22 Successfully uninstalled setuptools-65.5.1
20:58:27Successfully installed Pillow-12.0.0 PyYAML-6.0.3 appdirs-1.4.4 certifi-2025.11.12 charset_normalizer-3.4.4 future-1.0.0 idna-3.11 numpy-2.3.5 omero-py-5.21.3 portalocker-3.2.0 requests-2.32.5 setuptools-65.7.0 urllib3-2.6.2
20:58:2720:58:27[notice] A new release of pip available: 22.3.1 -> 25.3
20:58:27[notice] To update, run: python3.11 -m pip install --upgrade pip
20:58:28+ source /home/omero/workspace/OMERO-build/omero-virtualenv/bin/activate
20:58:28++ deactivate nondestructive
20:58:28++ '[' -n '' ']'
20:58:28++ '[' -n '' ']'
20:58:28++ hash -r
20:58:28++ '[' -n '' ']'
20:58:28++ unset VIRTUAL_ENV
20:58:28++ unset VIRTUAL_ENV_PROMPT
20:58:28++ '[' '!' nondestructive = nondestructive ']'
20:58:28++ VIRTUAL_ENV=/home/omero/workspace/OMERO-build/omero-virtualenv
20:58:28++ export VIRTUAL_ENV
20:58:28++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
20:58:28++ PATH=/home/omero/workspace/OMERO-build/omero-virtualenv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
20:58:28++ export PATH
20:58:28++ '[' -n '' ']'
20:58:28++ '[' -z '' ']'
20:58:28++ _OLD_VIRTUAL_PS1=
20:58:28++ PS1='(omero-virtualenv) '
20:58:28++ export PS1
20:58:28++ VIRTUAL_ENV_PROMPT='(omero-virtualenv) '
20:58:28++ export VIRTUAL_ENV_PROMPT
20:58:28++ hash -r
20:58:28+ source docs/hudson/OMERO.sh
20:58:28++ set -e
20:58:28++ set -u
20:58:28++ set -x
20:58:28++ source docs/hudson/functions.sh
20:58:28++ echo Building merge_ci
20:58:28Building merge_ci
20:58:28++ python3 ./build.py build-dev release-all
20:58:28Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
20:58:2820:58:28check-ivy:
20:58:28Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
20:58:28Created dir: /home/omero/workspace/OMERO-build/src/target
20:58:29:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
20:58:29:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
20:58:2920:58:29build-scons:
20:58:29Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
20:58:29No sub-builds to iterate on
20:58:29Entering /home/omero/workspace/OMERO-build/src/components/tools...
20:58:2920:58:29buildlist:
20:58:29:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
20:58:29:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
20:58:3020:58:30clean:
20:58:30Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
20:58:30Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
20:58:3020:58:30python-clean:
20:58:30WARNING: '' not a valid package name; please use only .-separated package names in setup.py
20:58:30/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-576-82ef22269e-ice36-b1') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
20:58:30 warnings.warn(
20:58:30running clean
20:58:30Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
20:58:30Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
20:58:3020:58:30python-clean:
20:58:30WARNING: '' not a valid package name; please use only .-separated package names in setup.py
20:58:30/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-576-82ef22269e-ice36-b1') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
20:58:30 warnings.warn(
20:58:30running clean
20:58:30Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
20:58:30Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
20:58:30Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
20:58:30Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
20:58:3120:58:31python-clean:
20:58:31WARNING: '' not a valid package name; please use only .-separated package names in setup.py
20:58:31/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-576-82ef22269e-ice36-b1') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
20:58:31 warnings.warn(
20:58:31running clean
20:58:31Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
20:58:31Deleting directory /home/omero/workspace/OMERO-build/src/target
20:58:3120:58:31build-scons:
20:58:31Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
20:58:3120:58:31build:
20:58:31No sub-builds to iterate on
20:58:31Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
20:58:31Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
20:58:31Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
20:58:31Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
20:58:3120:58:31tools-init:
20:58:31no-op
20:58:3120:58:31retrieve:
20:58:31:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
20:58:31:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
20:58:32WARNING: An illegal reflective access operation has occurred
20:58:32WARNING: Illegal reflective access by org.apache.ivy.util.url.IvyAuthenticator (file:/home/omero/workspace/OMERO-build/src/lib/repository/ivy-2.4.0.jar) to field java.net.Authenticator.theAuthenticator
20:58:32WARNING: Please consider reporting this to the maintainers of org.apache.ivy.util.url.IvyAuthenticator
20:58:32WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
20:58:32WARNING: All illegal access operations will be denied in a future release
21:01:5121:01:51prepare:
21:01:51Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
21:01:51Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
21:01:51Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
21:01:51Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
21:01:51Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
21:01:51Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
21:01:51Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
21:01:51Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
21:01:51Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
21:01:51Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
21:01:51Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
21:01:51Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
21:01:51Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
21:01:51Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
21:01:51Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
21:01:5121:01:51pre-compile:
21:01:51Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
21:01:51Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
21:01:51Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
21:01:51Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
21:01:51Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
21:01:5121:01:51compile:
21:01:51no-op
21:01:5121:01:51package:
21:01:51Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
21:01:5121:01:51install:
21:01:51:: delivering :: omero#omero_client;working@a7081cffa0b5 :: 5.6.3-576-82ef22269e-ice36-b1 :: integration :: Wed Dec 17 20:58:31 UTC 2025
21:01:51 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
21:01:51:: publishing :: omero#omero_client
21:01:51 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-576-82ef22269e-ice36-b1/omero_client-5.6.3-576-82ef22269e-ice36-b1.jar
21:01:51 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-576-82ef22269e-ice36-b1/omero_client-5.6.3-576-82ef22269e-ice36-b1.xml
21:01:52Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
21:01:52Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
21:01:5221:01:52retrieve:
21:01:52:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
21:01:52:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
21:01:52Entering /home/omero/workspace/OMERO-build/src/components/tools...
21:01:5221:01:52dist:
21:01:52Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
21:01:52Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
21:01:52Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
21:01:52Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.9.2.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
21:01:52Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
21:01:52Copying 29 files to /home/omero/workspace/OMERO-build/src/dist
21:01:52Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
21:01:52Entering /home/omero/workspace/OMERO-build/src/components/tests...
21:01:52Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
21:01:5221:01:52copy-licenses:
21:01:52Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
21:01:52Created dir: /home/omero/workspace/OMERO-build/src/dist/share
21:01:52Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
21:01:5221:01:52copy-history:
21:01:52Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
21:01:5221:01:52copy-etc:
21:01:52Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
21:01:52Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
21:01:5221:01:52copy-sql:
21:01:52Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
21:02:0421:02:04copy-server:
21:02:04 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.1.9 won
21:02:0421:02:04copy-client:
21:02:04Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
21:02:05 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.1.9 won
21:02:0621:02:06update-version:
21:02:06Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
21:02:0621:02:06create-workdirs:
21:02:06Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
21:02:06Created dir: /home/omero/workspace/OMERO-build/src/dist/var
21:02:06Created dir: /home/omero/workspace/OMERO-build/src/dist/var/tmp
21:02:0621:02:06copy-luts:
21:02:06Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
21:02:06Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
21:02:0621:02:06test-compile:
21:02:06:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
21:02:06Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
21:02:06Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
21:02:06Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
21:02:06Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
21:02:06Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
21:02:06Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
21:02:06Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
21:02:0621:02:06testng-init:
21:02:06:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
21:02:06:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
21:02:2521:02:24,757 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.16
21:02:2521:02:24,760 |-INFO in ch.qos.logback.classic.util.ContextInitializer@8a1bd62 - No custom configurators were discovered as a service.
21:02:2521:02:24,760 |-INFO in ch.qos.logback.classic.util.ContextInitializer@8a1bd62 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
21:02:2521:02:24,763 |-INFO in ch.qos.logback.classic.util.ContextInitializer@8a1bd62 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
21:02:2521:02:24,764 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
21:02:2521:02:24,764 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
21:02:2521:02:24,765 |-INFO in ch.qos.logback.classic.util.ContextInitializer@8a1bd62 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
21:02:2521:02:24,765 |-INFO in ch.qos.logback.classic.util.ContextInitializer@8a1bd62 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
21:02:2521:02:24,766 |-INFO in ch.qos.logback.classic.util.ContextInitializer@8a1bd62 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
21:02:2521:02:24,767 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
21:02:2521:02:24,767 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
21:02:2521:02:24,768 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@70d336f5 - Resource [logback.xml] occurs multiple times on the classpath.
21:02:2521:02:24,768 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@70d336f5 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
21:02:2521:02:24,768 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@70d336f5 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
21:02:2521:02:24,964 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
21:02:2521:02:24,964 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
21:02:2521:02:24,983 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
21:02:2521:02:24,985 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@206100aa - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
21:02:2521:02:24,985 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@206100aa - Please move "immediateFlush" property into the enclosing appender.
21:02:2521:02:25,044 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@206100aa - Setting the "immediateFlush" property of the enclosing appender to true
21:02:2521:02:25,045 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
21:02:2521:02:25,045 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
21:02:2521:02:25,045 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
21:02:2521:02:25,045 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
21:02:2521:02:25,045 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
21:02:2521:02:25,046 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
21:02:2521:02:25,047 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@54236211 - End of configuration.
21:02:2521:02:25,049 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@516c8f5a - Registering current configuration as safe fallback point
21:02:2521:02:25,049 |-INFO in ch.qos.logback.classic.util.ContextInitializer@8a1bd62 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 283 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
21:02:2521:02:25lifecycle.test-compile:
21:02:25Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
21:02:25Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
21:02:25warning: [options] bootstrap class path not set in conjunction with -source 8
21:02:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
21:02:26import omero.grid.RawAccessRequest;
21:02:26 ^
21:02:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
21:02:26import omero.grid.RawAccessRequest;
21:02:26 ^
21:02:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
21:02:26import omero.grid.RawAccessRequest;
21:02:26 ^
21:02:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
21:02:26import omero.model.ImportJob;
21:02:26 ^
21:02:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
21:02:26import omero.model.ImportJobI;
21:02:26 ^
21:02:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated
21:02:27 IObject link = (IObject) linkClass.newInstance();
21:02:27 ^
21:02:27 where T is a type-variable:
21:02:27 T extends Object declared in class Class
21:02:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
21:02:27 T copy = (T) obj.getClass().newInstance();
21:02:27 ^
21:02:27 where T is a type-variable:
21:02:27 T extends Object declared in class Class
21:02:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
21:02:27 RawAccessRequest raw = new RawAccessRequest();
21:02:27 ^
21:02:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
21:02:27 RawAccessRequest raw = new RawAccessRequest();
21:02:27 ^
21:02:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
21:02:27 raw.repoUuid = legacy.root().getHash().getValue();
21:02:27 ^
21:02:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
21:02:27 raw.command = "rm";
21:02:27 ^
21:02:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
21:02:27 raw.args = Arrays.asList(path);
21:02:27 ^
21:02:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
21:02:28 final IObject link = linkClass.newInstance();
21:02:28 ^
21:02:28 where T is a type-variable:
21:02:28 T extends Object declared in class Class
21:02:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
21:02:28 originalLink.setChild(annotationClass.newInstance());
21:02:28 ^
21:02:28 where T is a type-variable:
21:02:28 T extends Object declared in class Class
21:02:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
21:02:28 RoiResult r = svc.findByImage(id, new RoiOptions());
21:02:28 ^
21:02:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
21:02:28 final RawAccessRequest request = new RawAccessRequest();
21:02:28 ^
21:02:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
21:02:28 final RawAccessRequest request = new RawAccessRequest();
21:02:28 ^
21:02:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
21:02:28 request.repoUuid = repo.root().getHash().getValue();
21:02:28 ^
21:02:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
21:02:28 request.command = "exists";
21:02:28 ^
21:02:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
21:02:28 request.args = Collections.singletonList(dirPath);
21:02:28 ^
21:02:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
21:02:28 final RawAccessRequest request = new RawAccessRequest();
21:02:28 ^
21:02:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
21:02:28 final RawAccessRequest request = new RawAccessRequest();
21:02:28 ^
21:02:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
21:02:28 request.repoUuid = repo.root().getHash().getValue();
21:02:28 ^
21:02:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
21:02:28 request.command = "exists";
21:02:28 ^
21:02:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
21:02:28 request.args = Collections.singletonList(dirName);
21:02:28 ^
21:02:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
21:02:28 final ImportJob importJob = new ImportJobI();
21:02:28 ^
21:02:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
21:02:28 final ImportJob importJob = new ImportJobI();
21:02:28 ^
21:02:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
21:02:28 importJob.setImageName(omero.rtypes.rstring(name));
21:02:28 ^
21:02:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
21:02:28 importJob.setImageDescription(omero.rtypes.rstring(desc));
21:02:28 ^
21:02:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
21:02:28 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
21:02:28 ^
21:02:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
21:02:28 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
21:02:28 ^
21:02:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
21:02:28 final String savedName = sent.getImageName().getValue().toString();
21:02:28 ^
21:02:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
21:02:28 final String savedDesc = sent.getImageDescription().getValue().toString();
21:02:28 ^
21:02:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
21:02:28 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
21:02:28 ^
21:02:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
21:02:28 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
21:02:28 ^
21:02:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
21:02:28 final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
21:02:28 ^
21:02:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
21:02:28 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
21:02:28 ^
21:02:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
21:02:29 RoiResult r = svc.findByImage(image.getId().getValue(),
21:02:29 ^
21:02:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
21:02:29 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
21:02:29 ^
21:02:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
21:02:29 l = svc.getRoiMeasurements(image.getId().getValue(), options);
21:02:29 ^
21:02:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
21:02:29 l = svc.getRoiMeasurements(image.getId().getValue(), options);
21:02:29 ^
21:02:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
21:02:29 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
21:02:29 ^
21:02:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
21:02:29 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
21:02:29 ^
21:02:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
21:02:29 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
21:02:29 ^
21:02:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
21:02:29 table = svc.getTable(f.getId().getValue());
21:02:29 ^
21:02:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
21:02:29 RoiResult r = svc.findByImage(image.getId().getValue(),
21:02:29 ^
21:02:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
21:02:29 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
21:02:29 ^
21:02:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
21:02:29 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
21:02:29 ^
21:02:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
21:02:29 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
21:02:29 ^
21:02:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
21:02:29 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
21:02:29 ^
21:02:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
21:02:29 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
21:02:29 ^
21:02:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
21:02:29 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
21:02:29 ^
21:02:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
21:02:29 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
21:02:29 ^
21:02:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
21:02:29 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
21:02:29 ^
21:02:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Long(long) in Long has been deprecated
21:02:29 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
21:02:29 ^
21:02:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
21:02:29 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
21:02:29 ^
21:02:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
21:02:29 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
21:02:29 ^
21:02:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
21:02:29 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
21:02:29 ^
21:02:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
21:02:29 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
21:02:29 ^
21:02:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
21:02:29 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
21:02:29 ^
21:02:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
21:02:29 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
21:02:29 ^
21:02:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
21:02:29 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
21:02:29 ^
21:02:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
21:02:29 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
21:02:29 ^
21:02:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
21:02:29 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
21:02:29 ^
21:02:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
21:02:29 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
21:02:29 ^
21:02:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
21:02:29 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
21:02:29 ^
21:02:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
21:02:29 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
21:02:29 ^
21:02:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
21:02:29 svc.getShapeStatsRestricted(
21:02:29 ^
21:02:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
21:02:29 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
21:02:29 ^
21:02:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
21:02:29 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
21:02:29 ^
21:02:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
21:02:29 request.typesToIgnore = Collections.singletonList("TagAnnotation");
21:02:29 ^
21:02:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
21:02:29 request.typesToIgnore = Collections.singletonList("IAnnotationLink");
21:02:29 ^
21:02:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
21:02:29 request.typesToIgnore = Collections.singletonList("Annotation");
21:02:29 ^
21:02:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
21:02:29 request.typesToIgnore = Collections.singletonList("Annotation");
21:02:29 ^
21:02:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
21:02:29 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
21:02:29 ^
21:02:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
21:02:29 p2.setRelatedTo(p1);
21:02:29 ^
21:02:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
21:02:29 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
21:02:29 ^
21:02:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
21:02:29 pixels1.setRelatedTo(pixels2);
21:02:29 ^
21:02:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
21:02:29 Pixels pixels = pixels1.getRelatedTo();
21:02:29 ^
21:02:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
21:02:29 Assert.assertNull(pixels1.getRelatedTo());
21:02:29 ^
21:02:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
21:02:29 pixels1.setRelatedTo(pixels2);
21:02:29 ^
21:02:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
21:02:29 Pixels pixels = pixels1.getRelatedTo();
21:02:29 ^
21:02:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
21:02:29 Assert.assertNull(pixels1.getRelatedTo());
21:02:29 ^
21:02:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
21:02:29 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
21:02:29 ^
21:02:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
21:02:29 l = svc.getRoiMeasurements(image.getId().getValue(), options);
21:02:29 ^
21:02:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
21:02:29 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
21:02:29 ^
21:02:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
21:02:29 l = svc.getRoiMeasurements(image.getId().getValue(), options);
21:02:29 ^
21:02:29Note: Some input files use unchecked or unsafe operations.
21:02:29Note: Recompile with -Xlint:unchecked for details.
21:02:2988 warnings
21:02:30Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_19290128.tmp
21:02:30Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar
21:02:30:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
21:02:30:: delivering :: omero#OmeroJava-test;working@a7081cffa0b5 :: 5.6.3-576-82ef22269e-ice36-b1 :: integration :: Wed Dec 17 21:02:06 UTC 2025
21:02:30 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml
21:02:30:: publishing :: omero#OmeroJava-test
21:02:30 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-576-82ef22269e-ice36-b1.jar
21:02:30 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-576-82ef22269e-ice36-b1.xml
21:02:3021:02:30build-eclipse:
21:02:30No sub-builds to iterate on
21:02:30Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
21:02:3021:02:30retrieve:
21:02:30:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
21:02:30:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
21:02:3221:02:32prepare:
21:02:32Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
21:02:3321:02:33release-clients:
21:02:33Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-576-82ef22269e-ice36-b1.zip
21:02:3821:02:38release-zip:
21:02:38Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-576-82ef22269e-ice36-b1.zip
21:02:4821:02:48BUILD SUCCESSFUL
21:02:48Total time: 4 minutes 20 seconds
21:02:48++ '[' -d .git ']'
21:02:48++ python3 ./build.py release-src
21:02:48Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
21:02:4921:02:49release-src-git:
21:02:49Releasing openmicroscopy-5.6.3-576-82ef22269e-ice36-b1
21:02:50 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-576-82ef22269e-ice36-b1.zip
21:02:50 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-576-82ef22269e-ice36-b1-base.zip
21:02:5221:02:52BUILD SUCCESSFUL
21:02:52Total time: 3 seconds
21:02:52++ echo BUILD_NUMBER=1
21:02:52++ echo OMERO_BRANCH=merge_ci
21:02:52++ git_info
21:02:52+++ git rev-parse HEAD
21:02:52++ HEAD=82ef22269e0b990c811b449b18e0c2dd42d6d05f
21:02:52++ git log --max-count=1 82ef22269e0b990c811b449b18e0c2dd42d6d05f
21:02:52++ env
21:02:52++ sort
21:02:52Archiving artifacts
21:03:07Finished: SUCCESS
