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13:51:54 Started by user devspace
13:51:54 Running as SYSTEM
13:51:54 Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
13:51:54 The recommended git tool is: NONE
13:51:54 No credentials specified
13:51:54  > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10
13:51:54 Fetching changes from the remote Git repository
13:51:54  > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
13:51:54 Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git
13:51:54  > git --version # timeout=10
13:51:54  > git --version # 'git version 2.52.0'
13:51:54  > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
13:51:57  > git rev-parse origin/merge_ci^{commit} # timeout=10
13:51:57 Checking out Revision b7d17714173d836292c4df2e5e1300ca459600f1 (origin/merge_ci)
13:51:57  > git config core.sparsecheckout # timeout=10
13:51:57  > git checkout -f b7d17714173d836292c4df2e5e1300ca459600f1 # timeout=10
13:51:59 Commit message: "Add version.properties to etc/omero.properties"
13:51:59  > git rev-list --no-walk cc67600ce04c4dc557e74556cb7395eac177132a # timeout=10
13:51:59 Cleaning workspace
13:51:59  > git rev-parse --verify HEAD # timeout=10
13:51:59 Resetting working tree
13:51:59  > git reset --hard # timeout=10
13:51:59  > git clean -fdx # timeout=10
13:52:20 Copied 6 artifacts from "OMERO-python-superbuild-build" build number 1
13:52:20 [OMERO-build] $ /bin/bash -xe /tmp/jenkins4184733159133909044.sh
13:52:20 + mv omero-scripts/dist/omero_scripts-5.10.1.dev0.tar.gz .
13:52:20 + cd src
13:52:20 + export OMERO_BRANCH=merge_ci
13:52:20 + OMERO_BRANCH=merge_ci
13:52:20 + OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
13:52:20 + rm -rf /home/omero/workspace/OMERO-build/omero-virtualenv
13:52:42 + source /home/omero/settings.env
13:52:42 ++ OMERO_DB_HOST=pg
13:52:42 ++ OMERO_DB_USER=postgres
13:52:42 ++ OMERO_DB_PASS=
13:52:42 ++ OMERO_ROOT_PASS=omero
13:52:42 ++ OMERO_DATA_DIR=/OMERO
13:52:42 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
13:52:42 + python3.11 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
13:53:01 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl
13:53:03 Collecting zeroc-ice==3.6.5
13:53:03   Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
13:53:05      ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 16.0 MB/s eta 0:00:00
13:53:05 Installing collected packages: zeroc-ice
13:53:08 Successfully installed zeroc-ice-3.6.5
13:53:08 
13:53:08 [notice] A new release of pip available: 22.3.1 -> 26.1.2
13:53:08 [notice] To update, run: python3.11 -m pip install --upgrade pip
13:53:08 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U 'setuptools<66' omero-py
13:53:09 Requirement already satisfied: setuptools<66 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (65.5.1)
13:53:10 Collecting setuptools<66
13:53:10   Using cached setuptools-65.7.0-py3-none-any.whl (1.2 MB)
13:53:10 Collecting omero-py
13:53:10   Using cached omero_py-5.22.1-py3-none-any.whl (2.8 MB)
13:53:10 Collecting appdirs
13:53:10   Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
13:53:10 Collecting future
13:53:10   Using cached future-1.0.0-py3-none-any.whl (491 kB)
13:53:11 Collecting numpy<3,>=2
13:53:11   Using cached numpy-2.4.6-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB)
13:53:11 Collecting Pillow>=10.0.0
13:53:11   Using cached pillow-12.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (6.9 MB)
13:53:12 Collecting PyYAML
13:53:12   Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB)
13:53:12 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (from omero-py) (3.6.5)
13:53:12 Collecting requests
13:53:12   Using cached requests-2.34.2-py3-none-any.whl (73 kB)
13:53:12 Collecting portalocker
13:53:12   Using cached portalocker-3.2.0-py3-none-any.whl (22 kB)
13:53:12 Collecting charset_normalizer<4,>=2
13:53:12   Using cached charset_normalizer-3.4.7-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (214 kB)
13:53:12 Collecting idna<4,>=2.5
13:53:12   Using cached idna-3.18-py3-none-any.whl (65 kB)
13:53:12 Collecting urllib3<3,>=1.26
13:53:12   Using cached urllib3-2.7.0-py3-none-any.whl (131 kB)
13:53:12 Collecting certifi>=2023.5.7
13:53:12   Using cached certifi-2026.6.17-py3-none-any.whl (133 kB)
13:53:13 Installing collected packages: appdirs, urllib3, setuptools, PyYAML, portalocker, Pillow, numpy, idna, future, charset_normalizer, certifi, requests, omero-py
13:53:14   Attempting uninstall: setuptools
13:53:14     Found existing installation: setuptools 65.5.1
13:53:14     Uninstalling setuptools-65.5.1:
13:53:15       Successfully uninstalled setuptools-65.5.1
13:54:04 Successfully installed Pillow-12.3.0 PyYAML-6.0.3 appdirs-1.4.4 certifi-2026.6.17 charset_normalizer-3.4.7 future-1.0.0 idna-3.18 numpy-2.4.6 omero-py-5.22.1 portalocker-3.2.0 requests-2.34.2 setuptools-65.7.0 urllib3-2.7.0
13:54:04 
13:54:04 [notice] A new release of pip available: 22.3.1 -> 26.1.2
13:54:04 [notice] To update, run: python3.11 -m pip install --upgrade pip
13:54:04 + source /home/omero/workspace/OMERO-build/omero-virtualenv/bin/activate
13:54:04 ++ deactivate nondestructive
13:54:04 ++ '[' -n '' ']'
13:54:04 ++ '[' -n '' ']'
13:54:04 ++ hash -r
13:54:04 ++ '[' -n '' ']'
13:54:04 ++ unset VIRTUAL_ENV
13:54:04 ++ unset VIRTUAL_ENV_PROMPT
13:54:04 ++ '[' '!' nondestructive = nondestructive ']'
13:54:04 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-build/omero-virtualenv
13:54:04 ++ export VIRTUAL_ENV
13:54:04 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
13:54:04 ++ PATH=/home/omero/workspace/OMERO-build/omero-virtualenv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
13:54:04 ++ export PATH
13:54:04 ++ '[' -n '' ']'
13:54:04 ++ '[' -z '' ']'
13:54:04 ++ _OLD_VIRTUAL_PS1=
13:54:04 ++ PS1='(omero-virtualenv) '
13:54:04 ++ export PS1
13:54:04 ++ VIRTUAL_ENV_PROMPT='(omero-virtualenv) '
13:54:04 ++ export VIRTUAL_ENV_PROMPT
13:54:04 ++ hash -r
13:54:04 + source docs/hudson/OMERO.sh
13:54:04 ++ set -e
13:54:04 ++ set -u
13:54:04 ++ set -x
13:54:04 ++ source docs/hudson/functions.sh
13:54:04 ++ echo Building merge_ci
13:54:04 Building merge_ci
13:54:04 ++ python3 ./build.py build-dev release-all
13:54:04 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
13:54:05 
13:54:05 check-ivy:
13:54:05 Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
13:54:05 Created dir: /home/omero/workspace/OMERO-build/src/target
13:54:06 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
13:54:06 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
13:54:07 
13:54:07 build-scons:
13:54:07 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
13:54:09 No sub-builds to iterate on
13:54:09 Entering /home/omero/workspace/OMERO-build/src/components/tools...
13:54:09 
13:54:09 buildlist:
13:54:09 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
13:54:09 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
13:54:09 
13:54:09 clean:
13:54:09 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
13:54:10 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
13:54:10 
13:54:10 python-clean:
13:54:10 WARNING: '' not a valid package name; please use only .-separated package names in setup.py
13:54:10 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-614-b7d1771417-ice36-b2') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
13:54:10   warnings.warn(
13:54:10 running clean
13:54:10 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
13:54:11 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
13:54:11 
13:54:11 python-clean:
13:54:11 WARNING: '' not a valid package name; please use only .-separated package names in setup.py
13:54:11 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-614-b7d1771417-ice36-b2') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
13:54:11   warnings.warn(
13:54:11 running clean
13:54:11 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
13:54:12 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
13:54:12 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
13:54:12 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
13:54:13 
13:54:13 python-clean:
13:54:13 WARNING: '' not a valid package name; please use only .-separated package names in setup.py
13:54:13 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-614-b7d1771417-ice36-b2') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
13:54:13   warnings.warn(
13:54:13 running clean
13:54:13 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
13:54:13 Deleting directory /home/omero/workspace/OMERO-build/src/target
13:54:14 
13:54:14 build-scons:
13:54:14 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
13:54:15 
13:54:15 build:
13:54:15 No sub-builds to iterate on
13:54:15 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
13:54:16 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
13:54:16 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
13:54:16 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
13:54:16 
13:54:16 tools-init:
13:54:16 no-op
13:54:17 
13:54:17 retrieve:
13:54:17 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
13:54:17 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
13:55:28 
13:55:28 prepare:
13:55:28 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
13:55:28 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
13:55:28 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
13:55:28 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
13:55:28 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
13:55:28 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
13:55:28 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
13:55:28 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
13:55:28 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
13:55:28 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
13:55:28 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
13:55:28 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
13:55:28 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
13:55:28 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
13:55:28 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
13:55:28 
13:55:28 pre-compile:
13:55:28 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
13:55:29 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
13:55:37 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
13:55:44 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
13:55:45 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
13:55:47 
13:55:47 compile:
13:55:47 no-op
13:55:47 
13:55:47 package:
13:55:47 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
13:55:52 
13:55:52 install:
13:55:52 :: delivering :: omero#omero_client;working@03fd9c56c5e9 :: 5.6.3-614-b7d1771417-ice36-b2 :: integration :: Tue Jul 07 13:54:16 UTC 2026
13:55:52 	delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
13:55:52 :: publishing :: omero#omero_client
13:55:52 	published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-614-b7d1771417-ice36-b2/omero_client-5.6.3-614-b7d1771417-ice36-b2.jar
13:55:52 	published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-614-b7d1771417-ice36-b2/omero_client-5.6.3-614-b7d1771417-ice36-b2.xml
13:55:52 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
13:55:52 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
13:55:53 
13:55:53 retrieve:
13:55:53 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
13:55:53 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
13:55:54 Entering /home/omero/workspace/OMERO-build/src/components/tools...
13:55:54 
13:55:54 dist:
13:55:54 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
13:55:54 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
13:55:54 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
13:55:54 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.10.1.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
13:55:54 Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
13:55:55 Copying 29 files to /home/omero/workspace/OMERO-build/src/dist
13:55:55 Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
13:55:56 Entering /home/omero/workspace/OMERO-build/src/components/tests...
13:55:56 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
13:55:57 
13:55:57 copy-licenses:
13:55:57 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
13:55:57 Created dir: /home/omero/workspace/OMERO-build/src/dist/share
13:55:57 Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
13:55:57 
13:55:57 copy-history:
13:55:57 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
13:55:57 
13:55:57 copy-etc:
13:55:57 Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
13:55:57 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
13:55:58 
13:55:58 copy-sql:
13:55:58 Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
13:56:09 
13:56:09 copy-server:
13:56:09 	conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.1.9 won
13:56:14 
13:56:14 copy-client:
13:56:14 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
13:56:18 	conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.1.9 won
13:56:23 
13:56:23 update-version:
13:56:23 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
13:56:23 
13:56:23 create-workdirs:
13:56:23 Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
13:56:23 Created dir: /home/omero/workspace/OMERO-build/src/dist/var
13:56:23 Created dir: /home/omero/workspace/OMERO-build/src/dist/var/tmp
13:56:23 
13:56:23 copy-luts:
13:56:23 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
13:56:23 Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
13:56:23 
13:56:23 test-compile:
13:56:23 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
13:56:24 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
13:56:24 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
13:56:24 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
13:56:24 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
13:56:25 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
13:56:25 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
13:56:25 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
13:56:26 
13:56:26 testng-init:
13:56:26 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
13:56:26 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
13:56:34 13:56:34,337 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.16
13:56:34 13:56:34,340 |-INFO in ch.qos.logback.classic.util.ContextInitializer@24df8abf - No custom configurators were discovered as a service.
13:56:34 13:56:34,340 |-INFO in ch.qos.logback.classic.util.ContextInitializer@24df8abf - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
13:56:34 13:56:34,344 |-INFO in ch.qos.logback.classic.util.ContextInitializer@24df8abf - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
13:56:34 13:56:34,347 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
13:56:34 13:56:34,351 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
13:56:34 13:56:34,351 |-INFO in ch.qos.logback.classic.util.ContextInitializer@24df8abf - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 7 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
13:56:34 13:56:34,351 |-INFO in ch.qos.logback.classic.util.ContextInitializer@24df8abf - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
13:56:34 13:56:34,353 |-INFO in ch.qos.logback.classic.util.ContextInitializer@24df8abf - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
13:56:34 13:56:34,356 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
13:56:34 13:56:34,358 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
13:56:34 13:56:34,360 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@390d47db - Resource [logback.xml] occurs multiple times on the classpath.
13:56:34 13:56:34,360 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@390d47db - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
13:56:34 13:56:34,360 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@390d47db - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
13:56:34 13:56:34,598 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
13:56:34 13:56:34,598 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
13:56:34 13:56:34,620 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
13:56:34 13:56:34,622 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@6aa09c35 - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
13:56:34 13:56:34,622 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@6aa09c35 - Please move "immediateFlush" property into the enclosing appender.
13:56:34 13:56:34,693 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@6aa09c35 - Setting the "immediateFlush" property of the enclosing appender to true
13:56:34 13:56:34,694 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
13:56:34 13:56:34,694 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
13:56:34 13:56:34,694 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
13:56:34 13:56:34,694 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
13:56:34 13:56:34,694 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
13:56:34 13:56:34,694 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
13:56:34 13:56:34,696 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@22457838 - End of configuration.
13:56:34 13:56:34,698 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@7a9794bd - Registering current configuration as safe fallback point
13:56:34 13:56:34,698 |-INFO in ch.qos.logback.classic.util.ContextInitializer@24df8abf - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 345 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
13:56:34 
13:56:34 lifecycle.test-compile:
13:56:34 Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
13:56:34 Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
13:56:35 warning: [options] bootstrap class path not set in conjunction with -source 8
13:56:35 warning: [options] source value 8 is obsolete and will be removed in a future release
13:56:35 warning: [options] target value 8 is obsolete and will be removed in a future release
13:56:35 warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
13:56:36 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
13:56:36 import omero.grid.RawAccessRequest;
13:56:36                  ^
13:56:37 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
13:56:37 import omero.grid.RawAccessRequest;
13:56:37                  ^
13:56:37 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
13:56:37 import omero.grid.RawAccessRequest;
13:56:37                  ^
13:56:37 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
13:56:37 import omero.model.ImportJob;
13:56:37                   ^
13:56:37 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
13:56:37 import omero.model.ImportJobI;
13:56:37                   ^
13:56:38 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated
13:56:38         IObject link = (IObject) linkClass.newInstance();
13:56:38                                           ^
13:56:38   where T is a type-variable:
13:56:38     T extends Object declared in class Class
13:56:38 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
13:56:38         T copy = (T) obj.getClass().newInstance();
13:56:38                                    ^
13:56:38   where T is a type-variable:
13:56:38     T extends Object declared in class Class
13:56:38 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
13:56:38         RawAccessRequest raw = new RawAccessRequest();
13:56:38         ^
13:56:38 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
13:56:38         RawAccessRequest raw = new RawAccessRequest();
13:56:38                                    ^
13:56:38 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
13:56:38         raw.repoUuid = legacy.root().getHash().getValue();
13:56:38            ^
13:56:38 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
13:56:38         raw.command = "rm";
13:56:38            ^
13:56:38 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
13:56:38         raw.args = Arrays.asList(path);
13:56:38            ^
13:56:39 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
13:56:39         final IObject link = linkClass.newInstance();
13:56:39                                       ^
13:56:39   where T is a type-variable:
13:56:39     T extends Object declared in class Class
13:56:39 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
13:56:39             originalLink.setChild(annotationClass.newInstance());
13:56:39                                                  ^
13:56:39   where T is a type-variable:
13:56:39     T extends Object declared in class Class
13:56:39 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
13:56:39         RoiResult r = svc.findByImage(id, new RoiOptions());
13:56:39                          ^
13:56:40 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
13:56:40         final RawAccessRequest request = new RawAccessRequest();
13:56:40               ^
13:56:40 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
13:56:40         final RawAccessRequest request = new RawAccessRequest();
13:56:40                                              ^
13:56:40 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
13:56:40         request.repoUuid = repo.root().getHash().getValue();
13:56:40                ^
13:56:40 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
13:56:40         request.command = "exists";
13:56:40                ^
13:56:40 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
13:56:40         request.args = Collections.singletonList(dirPath);
13:56:40                ^
13:56:40 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
13:56:40         final RawAccessRequest request = new RawAccessRequest();
13:56:40               ^
13:56:40 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
13:56:40         final RawAccessRequest request = new RawAccessRequest();
13:56:40                                              ^
13:56:40 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
13:56:40         request.repoUuid = repo.root().getHash().getValue();
13:56:40                ^
13:56:40 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
13:56:40         request.command = "exists";
13:56:40                ^
13:56:40 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
13:56:40         request.args = Collections.singletonList(dirName);
13:56:40                ^
13:56:40 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
13:56:40         final ImportJob importJob = new ImportJobI();
13:56:40               ^
13:56:40 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
13:56:40         final ImportJob importJob = new ImportJobI();
13:56:40                                         ^
13:56:40 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
13:56:40         importJob.setImageName(omero.rtypes.rstring(name));
13:56:40                  ^
13:56:40 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
13:56:40         importJob.setImageDescription(omero.rtypes.rstring(desc));
13:56:40                  ^
13:56:40 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
13:56:40         ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
13:56:40         ^
13:56:40 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
13:56:40         ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
13:56:40                           ^
13:56:40 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
13:56:40         final String savedName = sent.getImageName().getValue().toString();
13:56:40                                      ^
13:56:40 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
13:56:40         final String savedDesc = sent.getImageDescription().getValue().toString();
13:56:40                                      ^
13:56:40 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
13:56:40         final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
13:56:40               ^
13:56:40 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
13:56:40         final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
13:56:40                                               ^
13:56:40 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
13:56:40         final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
13:56:40                                                        ^
13:56:40 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
13:56:40         final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
13:56:40                                                        ^
13:56:40 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
13:56:40         RoiResult r = svc.findByImage(image.getId().getValue(),
13:56:40                          ^
13:56:40 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
13:56:40         List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
13:56:40                                 ^
13:56:40 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
13:56:40         l = svc.getRoiMeasurements(image.getId().getValue(), options);
13:56:40                ^
13:56:40 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
13:56:40         l = svc.getRoiMeasurements(image.getId().getValue(), options);
13:56:40                ^
13:56:40 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
13:56:40         List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
13:56:40                                 ^
13:56:40 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
13:56:40         Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
13:56:40                                          ^
13:56:40 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
13:56:40         List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
13:56:40                                 ^
13:56:40 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
13:56:40         table = svc.getTable(f.getId().getValue());
13:56:40                    ^
13:56:40 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
13:56:40         RoiResult r = svc.findByImage(image.getId().getValue(),
13:56:40                          ^
13:56:40 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
13:56:40         r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
13:56:40                ^
13:56:40 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
13:56:40         r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
13:56:40                ^
13:56:40 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
13:56:40         r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
13:56:40                ^
13:56:40 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
13:56:40         r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
13:56:40                ^
13:56:40 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
13:56:40             null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
13:56:40                   ^
13:56:40 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
13:56:40             null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
13:56:40                                   ^
13:56:40 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
13:56:40             new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
13:56:40                                    ^
13:56:40 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
13:56:40             new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
13:56:40                                                    ^
13:56:40 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Long(long) in Long has been deprecated and marked for removal
13:56:40             Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
13:56:40                                       ^
13:56:40 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
13:56:40             Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
13:56:40                                                        ^
13:56:40 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
13:56:40             Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
13:56:40                                                                        ^
13:56:40 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
13:56:40         inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
13:56:40                                        ^
13:56:40 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
13:56:40         inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
13:56:40                                                         ^
13:56:40 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
13:56:40         inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
13:56:40                                        ^
13:56:40 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
13:56:40         inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
13:56:40                                                        ^
13:56:40 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
13:56:40         inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
13:56:40                                        ^
13:56:40 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
13:56:40         inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
13:56:40                                                        ^
13:56:40 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
13:56:40         inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
13:56:40                                        ^
13:56:40 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
13:56:40         inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
13:56:40                                                        ^
13:56:40 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
13:56:40         inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
13:56:40                                        ^
13:56:40 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
13:56:40         inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
13:56:40                                                        ^
13:56:40 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
13:56:40                 svc.getShapeStatsRestricted(
13:56:40                    ^
13:56:40 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
13:56:40         final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
13:56:40                                        ^
13:56:41 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
13:56:41         projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
13:56:41                                      ^
13:56:41 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
13:56:41         request.typesToIgnore = Collections.singletonList("TagAnnotation");
13:56:41                ^
13:56:41 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
13:56:41         request.typesToIgnore = Collections.singletonList("IAnnotationLink");
13:56:41                ^
13:56:41 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
13:56:41         request.typesToIgnore = Collections.singletonList("Annotation");
13:56:41                ^
13:56:41 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
13:56:41                     request.typesToIgnore = Collections.singletonList("Annotation");
13:56:41                            ^
13:56:41 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
13:56:41         projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
13:56:41                                      ^
13:56:41 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
13:56:41         p2.setRelatedTo(p1);
13:56:41           ^
13:56:41 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
13:56:41         Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
13:56:41                                           ^
13:56:41 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
13:56:41         pixels1.setRelatedTo(pixels2);
13:56:41                ^
13:56:41 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
13:56:41         Pixels pixels = pixels1.getRelatedTo();
13:56:41                                ^
13:56:41 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
13:56:41         Assert.assertNull(pixels1.getRelatedTo());
13:56:41                                  ^
13:56:41 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
13:56:41         pixels1.setRelatedTo(pixels2);
13:56:41                ^
13:56:41 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
13:56:41         Pixels pixels = pixels1.getRelatedTo();
13:56:41                                ^
13:56:41 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
13:56:41         Assert.assertNull(pixels1.getRelatedTo());
13:56:41                                  ^
13:56:41 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
13:56:41         List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
13:56:41                                 ^
13:56:41 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
13:56:41         l = svc.getRoiMeasurements(image.getId().getValue(), options);
13:56:41                ^
13:56:41 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
13:56:41         List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
13:56:41                                 ^
13:56:41 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
13:56:41         l = svc.getRoiMeasurements(image.getId().getValue(), options);
13:56:41                ^
13:56:41 Note: Some input files use unchecked or unsafe operations.
13:56:41 Note: Recompile with -Xlint:unchecked for details.
13:56:41 91 warnings
13:56:42 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_1166113899.tmp
13:56:42 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar
13:56:42 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
13:56:42 :: delivering :: omero#OmeroJava-test;working@03fd9c56c5e9 :: 5.6.3-614-b7d1771417-ice36-b2 :: integration :: Tue Jul 07 13:56:25 UTC 2026
13:56:42 	delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml
13:56:42 :: publishing :: omero#OmeroJava-test
13:56:42 	published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-614-b7d1771417-ice36-b2.jar
13:56:42 	published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-614-b7d1771417-ice36-b2.xml
13:56:42 
13:56:42 build-eclipse:
13:56:42 No sub-builds to iterate on
13:56:43 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
13:56:43 
13:56:43 retrieve:
13:56:43 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
13:56:43 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
13:56:47 
13:56:47 prepare:
13:56:47 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
13:56:51 
13:56:51 release-clients:
13:56:51 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-614-b7d1771417-ice36-b2.zip
13:56:57 
13:56:57 release-zip:
13:56:57 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-614-b7d1771417-ice36-b2.zip
13:57:09 
13:57:09 BUILD SUCCESSFUL
13:57:09 Total time: 3 minutes 4 seconds
13:57:09 ++ '[' -d .git ']'
13:57:09 ++ python3 ./build.py release-src
13:57:09 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
13:57:10 
13:57:10 release-src-git:
13:57:10 Releasing openmicroscopy-5.6.3-614-b7d1771417-ice36-b2
13:57:12   - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-614-b7d1771417-ice36-b2.zip
13:57:12   - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-614-b7d1771417-ice36-b2-base.zip
13:57:13 
13:57:13 BUILD SUCCESSFUL
13:57:13 Total time: 4 seconds
13:57:13 ++ echo BUILD_NUMBER=2
13:57:13 ++ echo OMERO_BRANCH=merge_ci
13:57:13 ++ git_info
13:57:13 +++ git rev-parse HEAD
13:57:13 ++ HEAD=b7d17714173d836292c4df2e5e1300ca459600f1
13:57:13 ++ git log --max-count=1 b7d17714173d836292c4df2e5e1300ca459600f1
13:57:13 ++ env
13:57:13 ++ sort
13:57:13 Archiving artifacts
13:57:30 Finished: SUCCESS