01:17:33Started by upstream project "Trigger" build number 601:17:33originally caused by:
01:17:33 Started by timer
01:17:33Running as SYSTEM
01:17:33Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
01:17:33The recommended git tool is: NONE
01:17:33No credentials specified
01:17:33 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10
01:17:33Fetching changes from the remote Git repository
01:17:33 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
01:17:33Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git01:17:33 > git --version # timeout=10
01:17:33 > git --version # 'git version 2.52.0'
01:17:33 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
01:17:37 > git rev-parse origin/merge_ci^{commit} # timeout=10
01:17:37Checking out Revision bfd0c26763ca69545bdd181332b8e4f1fd28fbea (origin/merge_ci)
01:17:37 > git config core.sparsecheckout # timeout=10
01:17:37 > git checkout -f bfd0c26763ca69545bdd181332b8e4f1fd28fbea # timeout=10
01:17:39Commit message: "Add version.properties to etc/omero.properties"
01:17:39 > git rev-list --no-walk b7d17714173d836292c4df2e5e1300ca459600f1 # timeout=10
01:17:39Cleaning workspace
01:17:39 > git rev-parse --verify HEAD # timeout=10
01:17:39Resetting working tree
01:17:39 > git reset --hard # timeout=10
01:17:39 > git clean -fdx # timeout=10
01:18:05Copied 6 artifacts from "OMERO-python-superbuild-build" build number 201:18:05[OMERO-build] $ /bin/bash -xe /tmp/jenkins7547581152406894770.sh
01:18:05+ mv omero-scripts/dist/omero_scripts-5.10.1.dev0.tar.gz .
01:18:05+ cd src
01:18:05+ export OMERO_BRANCH=merge_ci
01:18:05+ OMERO_BRANCH=merge_ci
01:18:05+ OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
01:18:05+ rm -rf /home/omero/workspace/OMERO-build/omero-virtualenv
01:18:29+ source /home/omero/settings.env
01:18:29++ OMERO_DB_HOST=pg
01:18:29++ OMERO_DB_USER=postgres
01:18:29++ OMERO_DB_PASS=
01:18:29++ OMERO_ROOT_PASS=omero
01:18:29++ OMERO_DATA_DIR=/OMERO
01:18:29++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
01:18:29+ python3.11 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
01:18:49+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl01:18:50Collecting zeroc-ice==3.6.5
01:18:50 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
01:18:53 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 13.2 MB/s eta 0:00:00
01:18:53Installing collected packages: zeroc-ice
01:18:56Successfully installed zeroc-ice-3.6.5
01:18:5601:18:56[notice] A new release of pip available: 22.3.1 -> 26.1.2
01:18:56[notice] To update, run: python3.11 -m pip install --upgrade pip
01:18:57+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U 'setuptools<66' omero-py
01:18:57Requirement already satisfied: setuptools<66 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (65.5.1)
01:18:58Collecting setuptools<66
01:18:58 Using cached setuptools-65.7.0-py3-none-any.whl (1.2 MB)
01:18:58Collecting omero-py
01:18:58 Using cached omero_py-5.22.1-py3-none-any.whl (2.8 MB)
01:18:58Collecting appdirs
01:18:58 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
01:18:58Collecting future
01:18:58 Using cached future-1.0.0-py3-none-any.whl (491 kB)
01:18:59Collecting numpy<3,>=2
01:18:59 Using cached numpy-2.4.6-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB)
01:19:00Collecting Pillow>=10.0.0
01:19:00 Using cached pillow-12.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (6.9 MB)
01:19:00Collecting PyYAML
01:19:00 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB)
01:19:00Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (from omero-py) (3.6.5)
01:19:00Collecting requests
01:19:00 Using cached requests-2.34.2-py3-none-any.whl (73 kB)
01:19:00Collecting portalocker
01:19:00 Using cached portalocker-3.2.0-py3-none-any.whl (22 kB)
01:19:01Collecting charset_normalizer<4,>=2
01:19:01 Downloading charset_normalizer-3.4.9-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (221 kB)
01:19:01 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 221.3/221.3 kB 3.5 MB/s eta 0:00:00
01:19:01Collecting idna<4,>=2.5
01:19:01 Using cached idna-3.18-py3-none-any.whl (65 kB)
01:19:01Collecting urllib3<3,>=1.26
01:19:01 Using cached urllib3-2.7.0-py3-none-any.whl (131 kB)
01:19:01Collecting certifi>=2023.5.7
01:19:01 Using cached certifi-2026.6.17-py3-none-any.whl (133 kB)
01:19:01Installing collected packages: appdirs, urllib3, setuptools, PyYAML, portalocker, Pillow, numpy, idna, future, charset_normalizer, certifi, requests, omero-py
01:19:02 Attempting uninstall: setuptools
01:19:02 Found existing installation: setuptools 65.5.1
01:19:03 Uninstalling setuptools-65.5.1:
01:19:03 Successfully uninstalled setuptools-65.5.1
01:19:56Successfully installed Pillow-12.3.0 PyYAML-6.0.3 appdirs-1.4.4 certifi-2026.6.17 charset_normalizer-3.4.9 future-1.0.0 idna-3.18 numpy-2.4.6 omero-py-5.22.1 portalocker-3.2.0 requests-2.34.2 setuptools-65.7.0 urllib3-2.7.0
01:19:5601:19:56[notice] A new release of pip available: 22.3.1 -> 26.1.2
01:19:56[notice] To update, run: python3.11 -m pip install --upgrade pip
01:19:56+ source /home/omero/workspace/OMERO-build/omero-virtualenv/bin/activate
01:19:56++ deactivate nondestructive
01:19:56++ '[' -n '' ']'
01:19:56++ '[' -n '' ']'
01:19:56++ hash -r
01:19:56++ '[' -n '' ']'
01:19:56++ unset VIRTUAL_ENV
01:19:56++ unset VIRTUAL_ENV_PROMPT
01:19:56++ '[' '!' nondestructive = nondestructive ']'
01:19:56++ VIRTUAL_ENV=/home/omero/workspace/OMERO-build/omero-virtualenv
01:19:56++ export VIRTUAL_ENV
01:19:56++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:19:56++ PATH=/home/omero/workspace/OMERO-build/omero-virtualenv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:19:56++ export PATH
01:19:56++ '[' -n '' ']'
01:19:56++ '[' -z '' ']'
01:19:56++ _OLD_VIRTUAL_PS1=
01:19:56++ PS1='(omero-virtualenv) '
01:19:56++ export PS1
01:19:56++ VIRTUAL_ENV_PROMPT='(omero-virtualenv) '
01:19:56++ export VIRTUAL_ENV_PROMPT
01:19:56++ hash -r
01:19:56+ source docs/hudson/OMERO.sh
01:19:56++ set -e
01:19:56++ set -u
01:19:56++ set -x
01:19:56++ source docs/hudson/functions.sh
01:19:56++ echo Building merge_ci
01:19:56Building merge_ci
01:19:56++ python3 ./build.py build-dev release-all
01:19:56Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
01:19:5701:19:57check-ivy:
01:19:57Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
01:19:57Created dir: /home/omero/workspace/OMERO-build/src/target
01:19:58:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
01:19:58:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:19:5901:19:59build-scons:
01:19:59Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
01:20:00No sub-builds to iterate on
01:20:01Entering /home/omero/workspace/OMERO-build/src/components/tools...
01:20:0101:20:01buildlist:
01:20:01:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
01:20:01:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:20:0101:20:01clean:
01:20:01Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
01:20:02Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
01:20:0201:20:02python-clean:
01:20:02WARNING: '' not a valid package name; please use only .-separated package names in setup.py
01:20:02/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-614-bfd0c26763-ice36-b3') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
01:20:02 warnings.warn(
01:20:02running clean
01:20:02Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
01:20:03Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
01:20:0301:20:03python-clean:
01:20:03WARNING: '' not a valid package name; please use only .-separated package names in setup.py
01:20:03/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-614-bfd0c26763-ice36-b3') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
01:20:03 warnings.warn(
01:20:03running clean
01:20:03Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
01:20:04Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
01:20:04Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
01:20:04Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
01:20:0501:20:05python-clean:
01:20:05WARNING: '' not a valid package name; please use only .-separated package names in setup.py
01:20:05/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-614-bfd0c26763-ice36-b3') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
01:20:05 warnings.warn(
01:20:05running clean
01:20:05Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
01:20:05Deleting directory /home/omero/workspace/OMERO-build/src/target
01:20:0601:20:06build-scons:
01:20:06Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
01:20:0801:20:08build:
01:20:08No sub-builds to iterate on
01:20:08Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
01:20:08Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
01:20:09Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
01:20:09Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
01:20:0901:20:09tools-init:
01:20:09no-op
01:20:0901:20:09retrieve:
01:20:09:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
01:20:09:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:21:2601:21:26prepare:
01:21:26Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
01:21:26Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
01:21:26Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
01:21:26Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
01:21:26Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
01:21:26Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
01:21:26Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
01:21:26Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
01:21:26Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
01:21:26Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
01:21:26Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
01:21:26Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
01:21:26Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
01:21:27Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
01:21:27Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
01:21:2701:21:27pre-compile:
01:21:27Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
01:21:28Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
01:21:36Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
01:21:40Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
01:21:41Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
01:21:4301:21:43compile:
01:21:43no-op
01:21:4301:21:43package:
01:21:43Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
01:21:4801:21:48install:
01:21:48:: delivering :: omero#omero_client;working@03fd9c56c5e9 :: 5.6.3-614-bfd0c26763-ice36-b3 :: integration :: Wed Jul 08 01:20:09 UTC 2026
01:21:48 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
01:21:48:: publishing :: omero#omero_client
01:21:48 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-614-bfd0c26763-ice36-b3/omero_client-5.6.3-614-bfd0c26763-ice36-b3.jar
01:21:48 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-614-bfd0c26763-ice36-b3/omero_client-5.6.3-614-bfd0c26763-ice36-b3.xml
01:21:49Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
01:21:49Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
01:21:4901:21:49retrieve:
01:21:49:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
01:21:49:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:21:50Entering /home/omero/workspace/OMERO-build/src/components/tools...
01:21:5001:21:50dist:
01:21:50Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
01:21:50Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
01:21:50Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
01:21:50Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.10.1.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
01:21:50Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
01:21:51Copying 29 files to /home/omero/workspace/OMERO-build/src/dist
01:21:51Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
01:21:51Entering /home/omero/workspace/OMERO-build/src/components/tests...
01:21:52Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
01:21:5301:21:53copy-licenses:
01:21:53Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
01:21:53Created dir: /home/omero/workspace/OMERO-build/src/dist/share
01:21:53Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
01:21:5301:21:53copy-history:
01:21:53Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
01:21:5301:21:53copy-etc:
01:21:53Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
01:21:53Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
01:21:5401:21:54copy-sql:
01:21:54Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
01:22:0601:22:06copy-server:
01:22:06 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.1.9 won
01:22:1201:22:12copy-client:
01:22:12Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
01:22:16 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.1.9 won
01:22:2101:22:21update-version:
01:22:21Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
01:22:2101:22:21create-workdirs:
01:22:21Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
01:22:21Created dir: /home/omero/workspace/OMERO-build/src/dist/var
01:22:21Created dir: /home/omero/workspace/OMERO-build/src/dist/var/tmp
01:22:2101:22:21copy-luts:
01:22:21Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
01:22:21Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
01:22:2201:22:22test-compile:
01:22:22:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:22:22Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
01:22:22Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
01:22:22Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
01:22:22Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
01:22:23Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
01:22:23Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
01:22:24Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
01:22:2401:22:24testng-init:
01:22:24:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
01:22:24:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:22:3301:22:32,990 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.16
01:22:3301:22:32,993 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1492c9d - No custom configurators were discovered as a service.
01:22:3301:22:32,993 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1492c9d - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
01:22:3301:22:32,997 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1492c9d - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
01:22:3301:22:33,001 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
01:22:3301:22:33,002 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
01:22:3301:22:33,003 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1492c9d - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 6 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
01:22:3301:22:33,003 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1492c9d - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
01:22:3301:22:33,005 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1492c9d - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
01:22:3301:22:33,008 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
01:22:3301:22:33,009 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
01:22:3301:22:33,010 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@24df8abf - Resource [logback.xml] occurs multiple times on the classpath.
01:22:3301:22:33,010 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@24df8abf - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
01:22:3301:22:33,010 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@24df8abf - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
01:22:3301:22:33,248 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
01:22:3301:22:33,248 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
01:22:3301:22:33,271 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
01:22:3301:22:33,273 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@390d47db - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
01:22:3301:22:33,273 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@390d47db - Please move "immediateFlush" property into the enclosing appender.
01:22:3301:22:33,348 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@390d47db - Setting the "immediateFlush" property of the enclosing appender to true
01:22:3301:22:33,349 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
01:22:3301:22:33,349 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
01:22:3301:22:33,349 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
01:22:3301:22:33,349 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
01:22:3301:22:33,349 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
01:22:3301:22:33,349 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
01:22:3301:22:33,351 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@6aa09c35 - End of configuration.
01:22:3301:22:33,353 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@22457838 - Registering current configuration as safe fallback point
01:22:3301:22:33,353 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1492c9d - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 348 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
01:22:3301:22:33lifecycle.test-compile:
01:22:33Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
01:22:33Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
01:22:33warning: [options] bootstrap class path not set in conjunction with -source 8
01:22:33warning: [options] source value 8 is obsolete and will be removed in a future release
01:22:33warning: [options] target value 8 is obsolete and will be removed in a future release
01:22:33warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
01:22:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:22:35import omero.grid.RawAccessRequest;
01:22:35 ^
01:22:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:22:36import omero.grid.RawAccessRequest;
01:22:36 ^
01:22:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:22:36import omero.grid.RawAccessRequest;
01:22:36 ^
01:22:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
01:22:36import omero.model.ImportJob;
01:22:36 ^
01:22:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
01:22:36import omero.model.ImportJobI;
01:22:36 ^
01:22:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated
01:22:37 IObject link = (IObject) linkClass.newInstance();
01:22:37 ^
01:22:37 where T is a type-variable:
01:22:37 T extends Object declared in class Class
01:22:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
01:22:37 T copy = (T) obj.getClass().newInstance();
01:22:37 ^
01:22:37 where T is a type-variable:
01:22:37 T extends Object declared in class Class
01:22:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:22:37 RawAccessRequest raw = new RawAccessRequest();
01:22:37 ^
01:22:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:22:37 RawAccessRequest raw = new RawAccessRequest();
01:22:37 ^
01:22:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
01:22:37 raw.repoUuid = legacy.root().getHash().getValue();
01:22:37 ^
01:22:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
01:22:37 raw.command = "rm";
01:22:37 ^
01:22:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
01:22:37 raw.args = Arrays.asList(path);
01:22:37 ^
01:22:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
01:22:37 final IObject link = linkClass.newInstance();
01:22:37 ^
01:22:37 where T is a type-variable:
01:22:37 T extends Object declared in class Class
01:22:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
01:22:37 originalLink.setChild(annotationClass.newInstance());
01:22:37 ^
01:22:37 where T is a type-variable:
01:22:37 T extends Object declared in class Class
01:22:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
01:22:38 RoiResult r = svc.findByImage(id, new RoiOptions());
01:22:38 ^
01:22:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:22:38 final RawAccessRequest request = new RawAccessRequest();
01:22:38 ^
01:22:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:22:38 final RawAccessRequest request = new RawAccessRequest();
01:22:38 ^
01:22:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
01:22:38 request.repoUuid = repo.root().getHash().getValue();
01:22:38 ^
01:22:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
01:22:38 request.command = "exists";
01:22:38 ^
01:22:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
01:22:38 request.args = Collections.singletonList(dirPath);
01:22:38 ^
01:22:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:22:38 final RawAccessRequest request = new RawAccessRequest();
01:22:38 ^
01:22:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:22:38 final RawAccessRequest request = new RawAccessRequest();
01:22:38 ^
01:22:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
01:22:38 request.repoUuid = repo.root().getHash().getValue();
01:22:38 ^
01:22:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
01:22:38 request.command = "exists";
01:22:38 ^
01:22:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
01:22:38 request.args = Collections.singletonList(dirName);
01:22:38 ^
01:22:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
01:22:38 final ImportJob importJob = new ImportJobI();
01:22:38 ^
01:22:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
01:22:38 final ImportJob importJob = new ImportJobI();
01:22:38 ^
01:22:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
01:22:38 importJob.setImageName(omero.rtypes.rstring(name));
01:22:38 ^
01:22:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
01:22:38 importJob.setImageDescription(omero.rtypes.rstring(desc));
01:22:38 ^
01:22:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
01:22:38 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
01:22:38 ^
01:22:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
01:22:38 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
01:22:38 ^
01:22:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
01:22:38 final String savedName = sent.getImageName().getValue().toString();
01:22:38 ^
01:22:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
01:22:38 final String savedDesc = sent.getImageDescription().getValue().toString();
01:22:38 ^
01:22:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
01:22:38 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
01:22:38 ^
01:22:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
01:22:38 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
01:22:38 ^
01:22:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
01:22:38 final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
01:22:38 ^
01:22:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
01:22:38 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
01:22:38 ^
01:22:39/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
01:22:39 RoiResult r = svc.findByImage(image.getId().getValue(),
01:22:39 ^
01:22:39/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:22:39 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
01:22:39 ^
01:22:39/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:22:39 l = svc.getRoiMeasurements(image.getId().getValue(), options);
01:22:39 ^
01:22:39/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:22:39 l = svc.getRoiMeasurements(image.getId().getValue(), options);
01:22:39 ^
01:22:39/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:22:39 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
01:22:39 ^
01:22:39/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
01:22:39 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
01:22:39 ^
01:22:39/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:22:39 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
01:22:39 ^
01:22:39/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
01:22:39 table = svc.getTable(f.getId().getValue());
01:22:39 ^
01:22:39/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
01:22:39 RoiResult r = svc.findByImage(image.getId().getValue(),
01:22:39 ^
01:22:39/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
01:22:39 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
01:22:39 ^
01:22:39/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
01:22:39 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
01:22:39 ^
01:22:39/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
01:22:39 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
01:22:39 ^
01:22:39/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
01:22:39 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
01:22:39 ^
01:22:39/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:22:39 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
01:22:39 ^
01:22:39/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:22:39 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
01:22:39 ^
01:22:39/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:22:39 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
01:22:39 ^
01:22:39/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:22:39 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
01:22:39 ^
01:22:39/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Long(long) in Long has been deprecated and marked for removal
01:22:39 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
01:22:39 ^
01:22:39/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:22:39 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
01:22:39 ^
01:22:39/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:22:39 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
01:22:39 ^
01:22:39/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:22:39 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
01:22:39 ^
01:22:39/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:22:39 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
01:22:39 ^
01:22:39/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:22:39 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
01:22:39 ^
01:22:39/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:22:39 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
01:22:39 ^
01:22:39/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:22:39 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
01:22:39 ^
01:22:39/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:22:39 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
01:22:39 ^
01:22:39/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:22:39 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
01:22:39 ^
01:22:39/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:22:39 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
01:22:39 ^
01:22:39/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:22:39 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
01:22:39 ^
01:22:39/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:22:39 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
01:22:39 ^
01:22:39/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
01:22:39 svc.getShapeStatsRestricted(
01:22:39 ^
01:22:39/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
01:22:39 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
01:22:39 ^
01:22:39/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
01:22:39 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
01:22:39 ^
01:22:40/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
01:22:40 request.typesToIgnore = Collections.singletonList("TagAnnotation");
01:22:40 ^
01:22:40/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
01:22:40 request.typesToIgnore = Collections.singletonList("IAnnotationLink");
01:22:40 ^
01:22:40/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
01:22:40 request.typesToIgnore = Collections.singletonList("Annotation");
01:22:40 ^
01:22:40/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
01:22:40 request.typesToIgnore = Collections.singletonList("Annotation");
01:22:40 ^
01:22:40/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
01:22:40 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
01:22:40 ^
01:22:40/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
01:22:40 p2.setRelatedTo(p1);
01:22:40 ^
01:22:40/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
01:22:40 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
01:22:40 ^
01:22:40/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
01:22:40 pixels1.setRelatedTo(pixels2);
01:22:40 ^
01:22:40/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
01:22:40 Pixels pixels = pixels1.getRelatedTo();
01:22:40 ^
01:22:40/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
01:22:40 Assert.assertNull(pixels1.getRelatedTo());
01:22:40 ^
01:22:40/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
01:22:40 pixels1.setRelatedTo(pixels2);
01:22:40 ^
01:22:40/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
01:22:40 Pixels pixels = pixels1.getRelatedTo();
01:22:40 ^
01:22:40/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
01:22:40 Assert.assertNull(pixels1.getRelatedTo());
01:22:40 ^
01:22:40/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:22:40 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
01:22:40 ^
01:22:40/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:22:40 l = svc.getRoiMeasurements(image.getId().getValue(), options);
01:22:40 ^
01:22:40/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:22:40 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
01:22:40 ^
01:22:40/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:22:40 l = svc.getRoiMeasurements(image.getId().getValue(), options);
01:22:40 ^
01:22:40Note: Some input files use unchecked or unsafe operations.
01:22:40Note: Recompile with -Xlint:unchecked for details.
01:22:4091 warnings
01:22:40Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_1029785339.tmp
01:22:40Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar
01:22:40:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:22:40:: delivering :: omero#OmeroJava-test;working@03fd9c56c5e9 :: 5.6.3-614-bfd0c26763-ice36-b3 :: integration :: Wed Jul 08 01:22:23 UTC 2026
01:22:40 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml
01:22:40:: publishing :: omero#OmeroJava-test
01:22:41 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-614-bfd0c26763-ice36-b3.jar
01:22:41 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-614-bfd0c26763-ice36-b3.xml
01:22:4101:22:41build-eclipse:
01:22:41No sub-builds to iterate on
01:22:41Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
01:22:4101:22:41retrieve:
01:22:41:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
01:22:41:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:22:4601:22:46prepare:
01:22:46Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
01:22:5001:22:50release-clients:
01:22:50Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-614-bfd0c26763-ice36-b3.zip
01:22:5601:22:56release-zip:
01:22:56Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-614-bfd0c26763-ice36-b3.zip
01:23:0801:23:08BUILD SUCCESSFUL
01:23:08Total time: 3 minutes 11 seconds
01:23:08++ '[' -d .git ']'
01:23:08++ python3 ./build.py release-src
01:23:08Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
01:23:0901:23:09release-src-git:
01:23:09Releasing openmicroscopy-5.6.3-614-bfd0c26763-ice36-b3
01:23:11 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-614-bfd0c26763-ice36-b3.zip
01:23:11 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-614-bfd0c26763-ice36-b3-base.zip
01:23:1301:23:13BUILD SUCCESSFUL
01:23:13Total time: 4 seconds
01:23:13++ echo BUILD_NUMBER=3
01:23:13++ echo OMERO_BRANCH=merge_ci
01:23:13++ git_info
01:23:13+++ git rev-parse HEAD
01:23:13++ HEAD=bfd0c26763ca69545bdd181332b8e4f1fd28fbea
01:23:13++ git log --max-count=1 bfd0c26763ca69545bdd181332b8e4f1fd28fbea
01:23:13++ env
01:23:13++ sort
01:23:13Archiving artifacts
01:23:29Finished: SUCCESS
