10:50:27Started by upstream project "Trigger" build number 810:50:27originally caused by:
10:50:27 Started by user devspace10:50:27Running as SYSTEM
10:50:27Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
10:50:27The recommended git tool is: NONE
10:50:27No credentials specified
10:50:27 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10
10:50:27Fetching changes from the remote Git repository
10:50:27 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
10:50:27Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git10:50:27 > git --version # timeout=10
10:50:27 > git --version # 'git version 2.52.0'
10:50:27 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
10:50:30 > git rev-parse origin/merge_ci^{commit} # timeout=10
10:50:30Checking out Revision 3c139506b6e3795d2a0b8803bb3049ecfd7b34f7 (origin/merge_ci)
10:50:30 > git config core.sparsecheckout # timeout=10
10:50:31 > git checkout -f 3c139506b6e3795d2a0b8803bb3049ecfd7b34f7 # timeout=10
10:50:44Commit message: "Add version.properties to etc/omero.properties"
10:50:44 > git rev-list --no-walk bfd0c26763ca69545bdd181332b8e4f1fd28fbea # timeout=10
10:50:44Cleaning workspace
10:50:44 > git rev-parse --verify HEAD # timeout=10
10:50:44Resetting working tree
10:50:44 > git reset --hard # timeout=10
10:50:45 > git clean -fdx # timeout=10
10:51:12Copied 6 artifacts from "OMERO-python-superbuild-build" build number 310:51:13[OMERO-build] $ /bin/bash -xe /tmp/jenkins18281438461572418895.sh
10:51:13+ mv omero-scripts/dist/omero_scripts-5.10.1.dev0.tar.gz .
10:51:13+ cd src
10:51:13+ export OMERO_BRANCH=merge_ci
10:51:13+ OMERO_BRANCH=merge_ci
10:51:13+ OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
10:51:13+ rm -rf /home/omero/workspace/OMERO-build/omero-virtualenv
10:51:37+ source /home/omero/settings.env
10:51:37++ OMERO_DB_HOST=pg
10:51:37++ OMERO_DB_USER=postgres
10:51:37++ OMERO_DB_PASS=
10:51:37++ OMERO_ROOT_PASS=omero
10:51:37++ OMERO_DATA_DIR=/OMERO
10:51:37++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
10:51:37+ python3.11 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
10:51:56+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl10:51:57Collecting zeroc-ice==3.6.5
10:51:57 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
10:52:00 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 10.8 MB/s eta 0:00:00
10:52:00Installing collected packages: zeroc-ice
10:52:04Successfully installed zeroc-ice-3.6.5
10:52:0410:52:04[notice] A new release of pip available: 22.3.1 -> 26.1.2
10:52:04[notice] To update, run: python3.11 -m pip install --upgrade pip
10:52:04+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U 'setuptools<66' omero-py
10:52:04Requirement already satisfied: setuptools<66 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (65.5.1)
10:52:05Collecting setuptools<66
10:52:05 Using cached setuptools-65.7.0-py3-none-any.whl (1.2 MB)
10:52:05Collecting omero-py
10:52:05 Using cached omero_py-5.22.1-py3-none-any.whl (2.8 MB)
10:52:05Collecting appdirs
10:52:05 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
10:52:05Collecting future
10:52:05 Using cached future-1.0.0-py3-none-any.whl (491 kB)
10:52:06Collecting numpy<3,>=2
10:52:06 Using cached numpy-2.4.6-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB)
10:52:07Collecting Pillow>=10.0.0
10:52:07 Using cached pillow-12.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (6.9 MB)
10:52:07Collecting PyYAML
10:52:07 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB)
10:52:07Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (from omero-py) (3.6.5)
10:52:08Collecting requests
10:52:08 Using cached requests-2.34.2-py3-none-any.whl (73 kB)
10:52:08Collecting portalocker
10:52:08 Using cached portalocker-3.2.0-py3-none-any.whl (22 kB)
10:52:08Collecting charset_normalizer<4,>=2
10:52:08 Using cached charset_normalizer-3.4.9-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (221 kB)
10:52:08Collecting idna<4,>=2.5
10:52:08 Using cached idna-3.18-py3-none-any.whl (65 kB)
10:52:08Collecting urllib3<3,>=1.26
10:52:08 Using cached urllib3-2.7.0-py3-none-any.whl (131 kB)
10:52:09Collecting certifi>=2023.5.7
10:52:09 Using cached certifi-2026.6.17-py3-none-any.whl (133 kB)
10:52:09Installing collected packages: appdirs, urllib3, setuptools, PyYAML, portalocker, Pillow, numpy, idna, future, charset_normalizer, certifi, requests, omero-py
10:52:10 Attempting uninstall: setuptools
10:52:10 Found existing installation: setuptools 65.5.1
10:52:10 Uninstalling setuptools-65.5.1:
10:52:11 Successfully uninstalled setuptools-65.5.1
10:52:59Successfully installed Pillow-12.3.0 PyYAML-6.0.3 appdirs-1.4.4 certifi-2026.6.17 charset_normalizer-3.4.9 future-1.0.0 idna-3.18 numpy-2.4.6 omero-py-5.22.1 portalocker-3.2.0 requests-2.34.2 setuptools-65.7.0 urllib3-2.7.0
10:52:5910:52:59[notice] A new release of pip available: 22.3.1 -> 26.1.2
10:52:59[notice] To update, run: python3.11 -m pip install --upgrade pip
10:52:59+ source /home/omero/workspace/OMERO-build/omero-virtualenv/bin/activate
10:52:59++ deactivate nondestructive
10:52:59++ '[' -n '' ']'
10:52:59++ '[' -n '' ']'
10:52:59++ hash -r
10:52:59++ '[' -n '' ']'
10:52:59++ unset VIRTUAL_ENV
10:52:59++ unset VIRTUAL_ENV_PROMPT
10:52:59++ '[' '!' nondestructive = nondestructive ']'
10:52:59++ VIRTUAL_ENV=/home/omero/workspace/OMERO-build/omero-virtualenv
10:52:59++ export VIRTUAL_ENV
10:52:59++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
10:52:59++ PATH=/home/omero/workspace/OMERO-build/omero-virtualenv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
10:52:59++ export PATH
10:52:59++ '[' -n '' ']'
10:52:59++ '[' -z '' ']'
10:52:59++ _OLD_VIRTUAL_PS1=
10:52:59++ PS1='(omero-virtualenv) '
10:52:59++ export PS1
10:52:59++ VIRTUAL_ENV_PROMPT='(omero-virtualenv) '
10:52:59++ export VIRTUAL_ENV_PROMPT
10:52:59++ hash -r
10:52:59+ source docs/hudson/OMERO.sh
10:52:59++ set -e
10:52:59++ set -u
10:52:59++ set -x
10:52:59++ source docs/hudson/functions.sh
10:52:59++ echo Building merge_ci
10:52:59Building merge_ci
10:52:59++ python3 ./build.py build-dev release-all
10:52:59Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
10:53:0010:53:00check-ivy:
10:53:00Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
10:53:01Created dir: /home/omero/workspace/OMERO-build/src/target
10:53:01:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
10:53:01:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
10:53:0210:53:02build-scons:
10:53:02Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
10:53:04No sub-builds to iterate on
10:53:04Entering /home/omero/workspace/OMERO-build/src/components/tools...
10:53:0410:53:04buildlist:
10:53:04:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
10:53:04:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
10:53:0510:53:05clean:
10:53:05Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
10:53:05Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
10:53:0610:53:06python-clean:
10:53:06WARNING: '' not a valid package name; please use only .-separated package names in setup.py
10:53:06/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-614-3c139506b6-ice36-b4') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
10:53:06 warnings.warn(
10:53:06running clean
10:53:06Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
10:53:06Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
10:53:0710:53:07python-clean:
10:53:07WARNING: '' not a valid package name; please use only .-separated package names in setup.py
10:53:07/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-614-3c139506b6-ice36-b4') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
10:53:07 warnings.warn(
10:53:07running clean
10:53:07Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
10:53:07Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
10:53:08Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
10:53:08Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
10:53:0810:53:08python-clean:
10:53:08WARNING: '' not a valid package name; please use only .-separated package names in setup.py
10:53:08/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-614-3c139506b6-ice36-b4') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
10:53:08 warnings.warn(
10:53:08running clean
10:53:08Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
10:53:08Deleting directory /home/omero/workspace/OMERO-build/src/target
10:53:0910:53:09build-scons:
10:53:09Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
10:53:1110:53:11build:
10:53:11No sub-builds to iterate on
10:53:11Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
10:53:11Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
10:53:12Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
10:53:12Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
10:53:1210:53:12tools-init:
10:53:12no-op
10:53:1210:53:12retrieve:
10:53:12:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
10:53:12:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
10:54:3110:54:31prepare:
10:54:31Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
10:54:31Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
10:54:31Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
10:54:31Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
10:54:31Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
10:54:31Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
10:54:31Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
10:54:31Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
10:54:31Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
10:54:31Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
10:54:31Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
10:54:31Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
10:54:31Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
10:54:31Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
10:54:31Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
10:54:3110:54:31pre-compile:
10:54:31Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
10:54:32Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
10:54:40Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
10:54:45Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
10:54:46Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
10:54:4810:54:48compile:
10:54:48no-op
10:54:4810:54:48package:
10:54:48Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
10:54:5210:54:52install:
10:54:52:: delivering :: omero#omero_client;working@5037f1a69d97 :: 5.6.3-614-3c139506b6-ice36-b4 :: integration :: Thu Jul 09 10:53:12 UTC 2026
10:54:52 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
10:54:52:: publishing :: omero#omero_client
10:54:52 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-614-3c139506b6-ice36-b4/omero_client-5.6.3-614-3c139506b6-ice36-b4.jar
10:54:53 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-614-3c139506b6-ice36-b4/omero_client-5.6.3-614-3c139506b6-ice36-b4.xml
10:54:53Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
10:54:53Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
10:54:5410:54:54retrieve:
10:54:54:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
10:54:54:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
10:54:54Entering /home/omero/workspace/OMERO-build/src/components/tools...
10:54:5410:54:54dist:
10:54:54Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
10:54:54Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
10:54:54Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
10:54:54Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.10.1.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
10:54:55Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
10:54:55Copying 29 files to /home/omero/workspace/OMERO-build/src/dist
10:54:56Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
10:54:56Entering /home/omero/workspace/OMERO-build/src/components/tests...
10:54:57Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
10:54:5710:54:57copy-licenses:
10:54:57Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
10:54:57Created dir: /home/omero/workspace/OMERO-build/src/dist/share
10:54:57Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
10:54:5810:54:58copy-history:
10:54:58Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
10:54:5810:54:58copy-etc:
10:54:58Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
10:54:58Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
10:54:5910:54:59copy-sql:
10:54:59Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
10:55:1010:55:10copy-server:
10:55:10 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.1.9 won
10:55:1510:55:15copy-client:
10:55:15Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
10:55:19 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.1.9 won
10:55:2410:55:24update-version:
10:55:24Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
10:55:2410:55:24create-workdirs:
10:55:24Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
10:55:24Created dir: /home/omero/workspace/OMERO-build/src/dist/var
10:55:24Created dir: /home/omero/workspace/OMERO-build/src/dist/var/tmp
10:55:2410:55:24copy-luts:
10:55:24Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
10:55:24Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
10:55:2410:55:24test-compile:
10:55:24:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
10:55:25Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
10:55:25Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
10:55:25Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
10:55:25Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
10:55:26Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
10:55:26Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
10:55:27Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
10:55:2710:55:27testng-init:
10:55:27:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
10:55:27:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
10:55:3510:55:35,452 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.16
10:55:3510:55:35,455 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1492c9d - No custom configurators were discovered as a service.
10:55:3510:55:35,455 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1492c9d - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
10:55:3510:55:35,459 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1492c9d - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
10:55:3510:55:35,462 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
10:55:3510:55:35,465 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
10:55:3510:55:35,466 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1492c9d - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 7 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
10:55:3510:55:35,466 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1492c9d - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
10:55:3510:55:35,468 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1492c9d - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
10:55:3510:55:35,471 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
10:55:3510:55:35,472 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
10:55:3510:55:35,474 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@24df8abf - Resource [logback.xml] occurs multiple times on the classpath.
10:55:3510:55:35,474 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@24df8abf - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
10:55:3510:55:35,474 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@24df8abf - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
10:55:3510:55:35,717 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
10:55:3510:55:35,717 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
10:55:3510:55:35,741 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
10:55:3510:55:35,743 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@390d47db - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
10:55:3510:55:35,743 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@390d47db - Please move "immediateFlush" property into the enclosing appender.
10:55:3510:55:35,816 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@390d47db - Setting the "immediateFlush" property of the enclosing appender to true
10:55:3510:55:35,817 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
10:55:3510:55:35,817 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
10:55:3510:55:35,817 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
10:55:3510:55:35,817 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
10:55:3510:55:35,818 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
10:55:3510:55:35,818 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
10:55:3510:55:35,819 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@6aa09c35 - End of configuration.
10:55:3510:55:35,821 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@22457838 - Registering current configuration as safe fallback point
10:55:3510:55:35,821 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1492c9d - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 353 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
10:55:3510:55:35lifecycle.test-compile:
10:55:35Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
10:55:35Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
10:55:36warning: [options] bootstrap class path not set in conjunction with -source 8
10:55:36warning: [options] source value 8 is obsolete and will be removed in a future release
10:55:36warning: [options] target value 8 is obsolete and will be removed in a future release
10:55:36warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
10:55:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
10:55:37import omero.grid.RawAccessRequest;
10:55:37 ^
10:55:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
10:55:38import omero.grid.RawAccessRequest;
10:55:38 ^
10:55:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
10:55:38import omero.grid.RawAccessRequest;
10:55:38 ^
10:55:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
10:55:38import omero.model.ImportJob;
10:55:38 ^
10:55:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
10:55:38import omero.model.ImportJobI;
10:55:38 ^
10:55:39/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated
10:55:39 IObject link = (IObject) linkClass.newInstance();
10:55:39 ^
10:55:39 where T is a type-variable:
10:55:39 T extends Object declared in class Class
10:55:39/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
10:55:39 T copy = (T) obj.getClass().newInstance();
10:55:39 ^
10:55:39 where T is a type-variable:
10:55:39 T extends Object declared in class Class
10:55:39/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
10:55:39 RawAccessRequest raw = new RawAccessRequest();
10:55:39 ^
10:55:39/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
10:55:39 RawAccessRequest raw = new RawAccessRequest();
10:55:39 ^
10:55:39/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
10:55:39 raw.repoUuid = legacy.root().getHash().getValue();
10:55:39 ^
10:55:39/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
10:55:39 raw.command = "rm";
10:55:39 ^
10:55:39/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
10:55:39 raw.args = Arrays.asList(path);
10:55:39 ^
10:55:40/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
10:55:40 final IObject link = linkClass.newInstance();
10:55:40 ^
10:55:40 where T is a type-variable:
10:55:40 T extends Object declared in class Class
10:55:40/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
10:55:40 originalLink.setChild(annotationClass.newInstance());
10:55:40 ^
10:55:40 where T is a type-variable:
10:55:40 T extends Object declared in class Class
10:55:40/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
10:55:40 RoiResult r = svc.findByImage(id, new RoiOptions());
10:55:40 ^
10:55:40/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
10:55:40 final RawAccessRequest request = new RawAccessRequest();
10:55:40 ^
10:55:40/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
10:55:40 final RawAccessRequest request = new RawAccessRequest();
10:55:40 ^
10:55:40/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
10:55:40 request.repoUuid = repo.root().getHash().getValue();
10:55:40 ^
10:55:40/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
10:55:40 request.command = "exists";
10:55:40 ^
10:55:40/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
10:55:40 request.args = Collections.singletonList(dirPath);
10:55:40 ^
10:55:40/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
10:55:40 final RawAccessRequest request = new RawAccessRequest();
10:55:40 ^
10:55:40/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
10:55:40 final RawAccessRequest request = new RawAccessRequest();
10:55:40 ^
10:55:40/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
10:55:40 request.repoUuid = repo.root().getHash().getValue();
10:55:40 ^
10:55:40/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
10:55:40 request.command = "exists";
10:55:40 ^
10:55:40/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
10:55:40 request.args = Collections.singletonList(dirName);
10:55:40 ^
10:55:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
10:55:41 final ImportJob importJob = new ImportJobI();
10:55:41 ^
10:55:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
10:55:41 final ImportJob importJob = new ImportJobI();
10:55:41 ^
10:55:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
10:55:41 importJob.setImageName(omero.rtypes.rstring(name));
10:55:41 ^
10:55:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
10:55:41 importJob.setImageDescription(omero.rtypes.rstring(desc));
10:55:41 ^
10:55:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
10:55:41 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
10:55:41 ^
10:55:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
10:55:41 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
10:55:41 ^
10:55:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
10:55:41 final String savedName = sent.getImageName().getValue().toString();
10:55:41 ^
10:55:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
10:55:41 final String savedDesc = sent.getImageDescription().getValue().toString();
10:55:41 ^
10:55:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
10:55:41 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
10:55:41 ^
10:55:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
10:55:41 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
10:55:41 ^
10:55:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
10:55:41 final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
10:55:41 ^
10:55:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
10:55:41 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
10:55:41 ^
10:55:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
10:55:41 RoiResult r = svc.findByImage(image.getId().getValue(),
10:55:41 ^
10:55:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
10:55:41 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
10:55:41 ^
10:55:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
10:55:41 l = svc.getRoiMeasurements(image.getId().getValue(), options);
10:55:41 ^
10:55:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
10:55:41 l = svc.getRoiMeasurements(image.getId().getValue(), options);
10:55:41 ^
10:55:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
10:55:41 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
10:55:41 ^
10:55:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
10:55:41 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
10:55:41 ^
10:55:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
10:55:41 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
10:55:41 ^
10:55:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
10:55:41 table = svc.getTable(f.getId().getValue());
10:55:41 ^
10:55:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
10:55:41 RoiResult r = svc.findByImage(image.getId().getValue(),
10:55:41 ^
10:55:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
10:55:41 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
10:55:41 ^
10:55:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
10:55:41 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
10:55:41 ^
10:55:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
10:55:41 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
10:55:41 ^
10:55:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
10:55:41 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
10:55:41 ^
10:55:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
10:55:41 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
10:55:41 ^
10:55:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
10:55:41 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
10:55:41 ^
10:55:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
10:55:41 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
10:55:41 ^
10:55:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
10:55:41 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
10:55:41 ^
10:55:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Long(long) in Long has been deprecated and marked for removal
10:55:41 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
10:55:41 ^
10:55:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
10:55:41 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
10:55:41 ^
10:55:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
10:55:41 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
10:55:41 ^
10:55:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
10:55:41 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
10:55:41 ^
10:55:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
10:55:41 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
10:55:41 ^
10:55:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
10:55:41 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
10:55:41 ^
10:55:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
10:55:41 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
10:55:41 ^
10:55:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
10:55:41 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
10:55:41 ^
10:55:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
10:55:41 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
10:55:41 ^
10:55:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
10:55:41 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
10:55:41 ^
10:55:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
10:55:41 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
10:55:41 ^
10:55:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
10:55:41 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
10:55:41 ^
10:55:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
10:55:41 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
10:55:41 ^
10:55:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
10:55:41 svc.getShapeStatsRestricted(
10:55:41 ^
10:55:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
10:55:41 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
10:55:41 ^
10:55:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
10:55:41 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
10:55:41 ^
10:55:42/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
10:55:42 request.typesToIgnore = Collections.singletonList("TagAnnotation");
10:55:42 ^
10:55:42/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
10:55:42 request.typesToIgnore = Collections.singletonList("IAnnotationLink");
10:55:42 ^
10:55:42/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
10:55:42 request.typesToIgnore = Collections.singletonList("Annotation");
10:55:42 ^
10:55:42/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
10:55:42 request.typesToIgnore = Collections.singletonList("Annotation");
10:55:42 ^
10:55:42/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
10:55:42 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
10:55:42 ^
10:55:42/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
10:55:42 p2.setRelatedTo(p1);
10:55:42 ^
10:55:42/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
10:55:42 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
10:55:42 ^
10:55:42/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
10:55:42 pixels1.setRelatedTo(pixels2);
10:55:42 ^
10:55:42/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
10:55:42 Pixels pixels = pixels1.getRelatedTo();
10:55:42 ^
10:55:42/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
10:55:42 Assert.assertNull(pixels1.getRelatedTo());
10:55:42 ^
10:55:42/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
10:55:42 pixels1.setRelatedTo(pixels2);
10:55:42 ^
10:55:42/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
10:55:42 Pixels pixels = pixels1.getRelatedTo();
10:55:42 ^
10:55:42/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
10:55:42 Assert.assertNull(pixels1.getRelatedTo());
10:55:42 ^
10:55:42/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
10:55:42 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
10:55:42 ^
10:55:42/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
10:55:42 l = svc.getRoiMeasurements(image.getId().getValue(), options);
10:55:42 ^
10:55:42/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
10:55:42 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
10:55:42 ^
10:55:42/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
10:55:42 l = svc.getRoiMeasurements(image.getId().getValue(), options);
10:55:42 ^
10:55:42Note: Some input files use unchecked or unsafe operations.
10:55:42Note: Recompile with -Xlint:unchecked for details.
10:55:4291 warnings
10:55:42Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_1083883754.tmp
10:55:42Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar
10:55:43:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
10:55:43:: delivering :: omero#OmeroJava-test;working@5037f1a69d97 :: 5.6.3-614-3c139506b6-ice36-b4 :: integration :: Thu Jul 09 10:55:26 UTC 2026
10:55:43 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml
10:55:43:: publishing :: omero#OmeroJava-test
10:55:43 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-614-3c139506b6-ice36-b4.jar
10:55:43 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-614-3c139506b6-ice36-b4.xml
10:55:4310:55:43build-eclipse:
10:55:43No sub-builds to iterate on
10:55:43Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
10:55:4410:55:44retrieve:
10:55:44:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
10:55:44:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
10:55:4810:55:48prepare:
10:55:48Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
10:55:5210:55:52release-clients:
10:55:52Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-614-3c139506b6-ice36-b4.zip
10:55:5810:55:58release-zip:
10:55:58Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-614-3c139506b6-ice36-b4.zip
10:56:0910:56:09BUILD SUCCESSFUL
10:56:09Total time: 3 minutes 10 seconds
10:56:10++ '[' -d .git ']'
10:56:10++ python3 ./build.py release-src
10:56:10Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
10:56:1110:56:11release-src-git:
10:56:11Releasing openmicroscopy-5.6.3-614-3c139506b6-ice36-b4
10:56:12 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-614-3c139506b6-ice36-b4.zip
10:56:12 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-614-3c139506b6-ice36-b4-base.zip
10:56:1410:56:14BUILD SUCCESSFUL
10:56:14Total time: 4 seconds
10:56:14++ echo BUILD_NUMBER=4
10:56:14++ echo OMERO_BRANCH=merge_ci
10:56:14++ git_info
10:56:14+++ git rev-parse HEAD
10:56:14++ HEAD=3c139506b6e3795d2a0b8803bb3049ecfd7b34f7
10:56:14++ git log --max-count=1 3c139506b6e3795d2a0b8803bb3049ecfd7b34f7
10:56:14++ env
10:56:14++ sort
10:56:14Archiving artifacts
10:56:31Finished: SUCCESS
