01:16:48Started by upstream project "Trigger" build number 901:16:48originally caused by:
01:16:48 Started by timer
01:16:48Running as SYSTEM
01:16:48Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
01:16:48The recommended git tool is: NONE
01:16:48No credentials specified
01:16:48 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10
01:16:48Fetching changes from the remote Git repository
01:16:48 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
01:16:48Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git01:16:48 > git --version # timeout=10
01:16:48 > git --version # 'git version 2.52.0'
01:16:48 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
01:16:51 > git rev-parse origin/merge_ci^{commit} # timeout=10
01:16:52Checking out Revision 46d99bded239515ad66c1cf748504c5126ef857a (origin/merge_ci)
01:16:52 > git config core.sparsecheckout # timeout=10
01:16:52 > git checkout -f 46d99bded239515ad66c1cf748504c5126ef857a # timeout=10
01:16:54Commit message: "Add version.properties to etc/omero.properties"
01:16:54 > git rev-list --no-walk 3c139506b6e3795d2a0b8803bb3049ecfd7b34f7 # timeout=10
01:16:54Cleaning workspace
01:16:54 > git rev-parse --verify HEAD # timeout=10
01:16:54Resetting working tree
01:16:54 > git reset --hard # timeout=10
01:16:54 > git clean -fdx # timeout=10
01:17:21Copied 6 artifacts from "OMERO-python-superbuild-build" build number 401:17:22[OMERO-build] $ /bin/bash -xe /tmp/jenkins8022830923130945322.sh
01:17:22+ mv omero-scripts/dist/omero_scripts-5.10.1.dev0.tar.gz .
01:17:22+ cd src
01:17:22+ export OMERO_BRANCH=merge_ci
01:17:22+ OMERO_BRANCH=merge_ci
01:17:22+ OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
01:17:22+ rm -rf /home/omero/workspace/OMERO-build/omero-virtualenv
01:17:47+ source /home/omero/settings.env
01:17:47++ OMERO_DB_HOST=pg
01:17:47++ OMERO_DB_USER=postgres
01:17:47++ OMERO_DB_PASS=
01:17:47++ OMERO_ROOT_PASS=omero
01:17:47++ OMERO_DATA_DIR=/OMERO
01:17:47++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
01:17:47+ python3.11 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
01:18:07+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl01:18:08Collecting zeroc-ice==3.6.5
01:18:08 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
01:18:11 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 11.8 MB/s eta 0:00:00
01:18:11Installing collected packages: zeroc-ice
01:18:15Successfully installed zeroc-ice-3.6.5
01:18:1501:18:15[notice] A new release of pip available: 22.3.1 -> 26.1.2
01:18:15[notice] To update, run: python3.11 -m pip install --upgrade pip
01:18:15+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U 'setuptools<66' omero-py
01:18:16Requirement already satisfied: setuptools<66 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (65.5.1)
01:18:16Collecting setuptools<66
01:18:16 Using cached setuptools-65.7.0-py3-none-any.whl (1.2 MB)
01:18:16Collecting omero-py
01:18:16 Using cached omero_py-5.22.1-py3-none-any.whl (2.8 MB)
01:18:16Collecting appdirs
01:18:17 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
01:18:17Collecting future
01:18:17 Using cached future-1.0.0-py3-none-any.whl (491 kB)
01:18:17Collecting numpy<3,>=2
01:18:17 Using cached numpy-2.4.6-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB)
01:18:18Collecting Pillow>=10.0.0
01:18:18 Using cached pillow-12.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (6.9 MB)
01:18:18Collecting PyYAML
01:18:18 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB)
01:18:18Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (from omero-py) (3.6.5)
01:18:18Collecting requests
01:18:18 Using cached requests-2.34.2-py3-none-any.whl (73 kB)
01:18:18Collecting portalocker
01:18:19 Using cached portalocker-3.2.0-py3-none-any.whl (22 kB)
01:18:19Collecting charset_normalizer<4,>=2
01:18:19 Using cached charset_normalizer-3.4.9-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (221 kB)
01:18:19Collecting idna<4,>=2.5
01:18:19 Using cached idna-3.18-py3-none-any.whl (65 kB)
01:18:19Collecting urllib3<3,>=1.26
01:18:19 Using cached urllib3-2.7.0-py3-none-any.whl (131 kB)
01:18:19Collecting certifi>=2023.5.7
01:18:19 Using cached certifi-2026.6.17-py3-none-any.whl (133 kB)
01:18:20Installing collected packages: appdirs, urllib3, setuptools, PyYAML, portalocker, Pillow, numpy, idna, future, charset_normalizer, certifi, requests, omero-py
01:18:21 Attempting uninstall: setuptools
01:18:21 Found existing installation: setuptools 65.5.1
01:18:21 Uninstalling setuptools-65.5.1:
01:18:22 Successfully uninstalled setuptools-65.5.1
01:19:10Successfully installed Pillow-12.3.0 PyYAML-6.0.3 appdirs-1.4.4 certifi-2026.6.17 charset_normalizer-3.4.9 future-1.0.0 idna-3.18 numpy-2.4.6 omero-py-5.22.1 portalocker-3.2.0 requests-2.34.2 setuptools-65.7.0 urllib3-2.7.0
01:19:1001:19:10[notice] A new release of pip available: 22.3.1 -> 26.1.2
01:19:10[notice] To update, run: python3.11 -m pip install --upgrade pip
01:19:10+ source /home/omero/workspace/OMERO-build/omero-virtualenv/bin/activate
01:19:10++ deactivate nondestructive
01:19:10++ '[' -n '' ']'
01:19:10++ '[' -n '' ']'
01:19:10++ hash -r
01:19:10++ '[' -n '' ']'
01:19:10++ unset VIRTUAL_ENV
01:19:10++ unset VIRTUAL_ENV_PROMPT
01:19:10++ '[' '!' nondestructive = nondestructive ']'
01:19:10++ VIRTUAL_ENV=/home/omero/workspace/OMERO-build/omero-virtualenv
01:19:10++ export VIRTUAL_ENV
01:19:10++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:19:10++ PATH=/home/omero/workspace/OMERO-build/omero-virtualenv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:19:10++ export PATH
01:19:10++ '[' -n '' ']'
01:19:10++ '[' -z '' ']'
01:19:10++ _OLD_VIRTUAL_PS1=
01:19:10++ PS1='(omero-virtualenv) '
01:19:10++ export PS1
01:19:10++ VIRTUAL_ENV_PROMPT='(omero-virtualenv) '
01:19:10++ export VIRTUAL_ENV_PROMPT
01:19:10++ hash -r
01:19:10+ source docs/hudson/OMERO.sh
01:19:10++ set -e
01:19:10++ set -u
01:19:10++ set -x
01:19:10++ source docs/hudson/functions.sh
01:19:10++ echo Building merge_ci
01:19:10Building merge_ci
01:19:10++ python3 ./build.py build-dev release-all
01:19:10Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
01:19:1201:19:12check-ivy:
01:19:12Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
01:19:12Created dir: /home/omero/workspace/OMERO-build/src/target
01:19:12:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
01:19:12:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:19:1301:19:13build-scons:
01:19:13Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
01:19:15No sub-builds to iterate on
01:19:15Entering /home/omero/workspace/OMERO-build/src/components/tools...
01:19:1601:19:16buildlist:
01:19:16:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
01:19:16:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:19:1601:19:16clean:
01:19:16Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
01:19:16Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
01:19:1701:19:17python-clean:
01:19:17WARNING: '' not a valid package name; please use only .-separated package names in setup.py
01:19:17/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-614-46d99bded2-ice36-b5') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
01:19:17 warnings.warn(
01:19:17running clean
01:19:17Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
01:19:17Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
01:19:1801:19:18python-clean:
01:19:18WARNING: '' not a valid package name; please use only .-separated package names in setup.py
01:19:18/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-614-46d99bded2-ice36-b5') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
01:19:18 warnings.warn(
01:19:18running clean
01:19:18Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
01:19:18Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
01:19:19Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
01:19:19Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
01:19:1901:19:19python-clean:
01:19:19WARNING: '' not a valid package name; please use only .-separated package names in setup.py
01:19:19/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-614-46d99bded2-ice36-b5') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
01:19:19 warnings.warn(
01:19:19running clean
01:19:19Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
01:19:19Deleting directory /home/omero/workspace/OMERO-build/src/target
01:19:2001:19:20build-scons:
01:19:20Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
01:19:2201:19:22build:
01:19:22No sub-builds to iterate on
01:19:22Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
01:19:23Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
01:19:23Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
01:19:24Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
01:19:2401:19:24tools-init:
01:19:24no-op
01:19:2401:19:24retrieve:
01:19:24:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
01:19:24:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:20:4401:20:44prepare:
01:20:44Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
01:20:44Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
01:20:44Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
01:20:44Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
01:20:44Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
01:20:44Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
01:20:44Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
01:20:44Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
01:20:44Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
01:20:44Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
01:20:44Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
01:20:44Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
01:20:44Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
01:20:44Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
01:20:44Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
01:20:4401:20:44pre-compile:
01:20:44Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
01:20:46Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
01:20:53Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
01:20:57Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
01:20:58Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
01:21:0001:21:00compile:
01:21:00no-op
01:21:0001:21:00package:
01:21:00Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
01:21:0401:21:04install:
01:21:04:: delivering :: omero#omero_client;working@5037f1a69d97 :: 5.6.3-614-46d99bded2-ice36-b5 :: integration :: Fri Jul 10 01:19:23 UTC 2026
01:21:04 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
01:21:04:: publishing :: omero#omero_client
01:21:04 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-614-46d99bded2-ice36-b5/omero_client-5.6.3-614-46d99bded2-ice36-b5.jar
01:21:04 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-614-46d99bded2-ice36-b5/omero_client-5.6.3-614-46d99bded2-ice36-b5.xml
01:21:05Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
01:21:05Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
01:21:0501:21:05retrieve:
01:21:05:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
01:21:05:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:21:06Entering /home/omero/workspace/OMERO-build/src/components/tools...
01:21:0601:21:06dist:
01:21:06Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
01:21:06Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
01:21:06Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
01:21:06Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.10.1.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
01:21:07Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
01:21:07Copying 29 files to /home/omero/workspace/OMERO-build/src/dist
01:21:07Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
01:21:08Entering /home/omero/workspace/OMERO-build/src/components/tests...
01:21:08Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
01:21:0901:21:09copy-licenses:
01:21:09Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
01:21:09Created dir: /home/omero/workspace/OMERO-build/src/dist/share
01:21:09Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
01:21:0901:21:09copy-history:
01:21:09Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
01:21:0901:21:09copy-etc:
01:21:09Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
01:21:10Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
01:21:1001:21:10copy-sql:
01:21:10Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
01:21:2301:21:23copy-server:
01:21:23 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.1.9 won
01:21:2801:21:28copy-client:
01:21:28Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
01:21:32 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.1.9 won
01:21:3701:21:37update-version:
01:21:37Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
01:21:3701:21:37create-workdirs:
01:21:37Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
01:21:37Created dir: /home/omero/workspace/OMERO-build/src/dist/var
01:21:37Created dir: /home/omero/workspace/OMERO-build/src/dist/var/tmp
01:21:3701:21:37copy-luts:
01:21:37Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
01:21:37Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
01:21:3801:21:38test-compile:
01:21:38:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:21:38Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
01:21:39Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
01:21:39Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
01:21:39Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
01:21:39Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
01:21:40Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
01:21:40Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
01:21:4001:21:40testng-init:
01:21:40:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
01:21:40:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:21:4901:21:49,081 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.16
01:21:4901:21:49,084 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1492c9d - No custom configurators were discovered as a service.
01:21:4901:21:49,084 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1492c9d - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
01:21:4901:21:49,087 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1492c9d - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
01:21:4901:21:49,091 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
01:21:4901:21:49,093 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
01:21:4901:21:49,094 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1492c9d - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 7 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
01:21:4901:21:49,094 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1492c9d - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
01:21:4901:21:49,096 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1492c9d - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
01:21:4901:21:49,098 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
01:21:4901:21:49,099 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
01:21:4901:21:49,101 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@24df8abf - Resource [logback.xml] occurs multiple times on the classpath.
01:21:4901:21:49,101 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@24df8abf - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
01:21:4901:21:49,101 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@24df8abf - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
01:21:4901:21:49,332 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
01:21:4901:21:49,332 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
01:21:4901:21:49,355 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
01:21:4901:21:49,357 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@390d47db - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
01:21:4901:21:49,357 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@390d47db - Please move "immediateFlush" property into the enclosing appender.
01:21:4901:21:49,430 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@390d47db - Setting the "immediateFlush" property of the enclosing appender to true
01:21:4901:21:49,431 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
01:21:4901:21:49,431 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
01:21:4901:21:49,431 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
01:21:4901:21:49,431 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
01:21:4901:21:49,431 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
01:21:4901:21:49,431 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
01:21:4901:21:49,433 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@6aa09c35 - End of configuration.
01:21:4901:21:49,435 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@22457838 - Registering current configuration as safe fallback point
01:21:4901:21:49,435 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1492c9d - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 339 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
01:21:4901:21:49lifecycle.test-compile:
01:21:49Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
01:21:49Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
01:21:49warning: [options] bootstrap class path not set in conjunction with -source 8
01:21:49warning: [options] source value 8 is obsolete and will be removed in a future release
01:21:49warning: [options] target value 8 is obsolete and will be removed in a future release
01:21:49warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
01:21:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:21:51import omero.grid.RawAccessRequest;
01:21:51 ^
01:21:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:21:51import omero.grid.RawAccessRequest;
01:21:51 ^
01:21:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:21:52import omero.grid.RawAccessRequest;
01:21:52 ^
01:21:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
01:21:52import omero.model.ImportJob;
01:21:52 ^
01:21:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
01:21:52import omero.model.ImportJobI;
01:21:52 ^
01:21:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated
01:21:53 IObject link = (IObject) linkClass.newInstance();
01:21:53 ^
01:21:53 where T is a type-variable:
01:21:53 T extends Object declared in class Class
01:21:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
01:21:53 T copy = (T) obj.getClass().newInstance();
01:21:53 ^
01:21:53 where T is a type-variable:
01:21:53 T extends Object declared in class Class
01:21:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:21:53 RawAccessRequest raw = new RawAccessRequest();
01:21:53 ^
01:21:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:21:53 RawAccessRequest raw = new RawAccessRequest();
01:21:53 ^
01:21:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
01:21:53 raw.repoUuid = legacy.root().getHash().getValue();
01:21:53 ^
01:21:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
01:21:53 raw.command = "rm";
01:21:53 ^
01:21:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
01:21:53 raw.args = Arrays.asList(path);
01:21:53 ^
01:21:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
01:21:53 final IObject link = linkClass.newInstance();
01:21:53 ^
01:21:53 where T is a type-variable:
01:21:53 T extends Object declared in class Class
01:21:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
01:21:53 originalLink.setChild(annotationClass.newInstance());
01:21:53 ^
01:21:53 where T is a type-variable:
01:21:53 T extends Object declared in class Class
01:21:54/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
01:21:54 RoiResult r = svc.findByImage(id, new RoiOptions());
01:21:54 ^
01:21:54/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:21:54 final RawAccessRequest request = new RawAccessRequest();
01:21:54 ^
01:21:54/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:21:54 final RawAccessRequest request = new RawAccessRequest();
01:21:54 ^
01:21:54/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
01:21:54 request.repoUuid = repo.root().getHash().getValue();
01:21:54 ^
01:21:54/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
01:21:54 request.command = "exists";
01:21:54 ^
01:21:54/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
01:21:54 request.args = Collections.singletonList(dirPath);
01:21:54 ^
01:21:54/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:21:54 final RawAccessRequest request = new RawAccessRequest();
01:21:54 ^
01:21:54/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:21:54 final RawAccessRequest request = new RawAccessRequest();
01:21:54 ^
01:21:54/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
01:21:54 request.repoUuid = repo.root().getHash().getValue();
01:21:54 ^
01:21:54/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
01:21:54 request.command = "exists";
01:21:54 ^
01:21:54/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
01:21:54 request.args = Collections.singletonList(dirName);
01:21:54 ^
01:21:54/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
01:21:54 final ImportJob importJob = new ImportJobI();
01:21:54 ^
01:21:54/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
01:21:54 final ImportJob importJob = new ImportJobI();
01:21:54 ^
01:21:54/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
01:21:54 importJob.setImageName(omero.rtypes.rstring(name));
01:21:54 ^
01:21:54/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
01:21:54 importJob.setImageDescription(omero.rtypes.rstring(desc));
01:21:54 ^
01:21:54/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
01:21:54 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
01:21:54 ^
01:21:54/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
01:21:54 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
01:21:54 ^
01:21:54/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
01:21:54 final String savedName = sent.getImageName().getValue().toString();
01:21:54 ^
01:21:54/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
01:21:54 final String savedDesc = sent.getImageDescription().getValue().toString();
01:21:54 ^
01:21:54/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
01:21:54 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
01:21:54 ^
01:21:54/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
01:21:54 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
01:21:54 ^
01:21:54/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
01:21:54 final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
01:21:54 ^
01:21:54/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
01:21:54 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
01:21:54 ^
01:21:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
01:21:55 RoiResult r = svc.findByImage(image.getId().getValue(),
01:21:55 ^
01:21:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:21:55 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
01:21:55 ^
01:21:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:21:55 l = svc.getRoiMeasurements(image.getId().getValue(), options);
01:21:55 ^
01:21:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:21:55 l = svc.getRoiMeasurements(image.getId().getValue(), options);
01:21:55 ^
01:21:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:21:55 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
01:21:55 ^
01:21:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
01:21:55 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
01:21:55 ^
01:21:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:21:55 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
01:21:55 ^
01:21:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
01:21:55 table = svc.getTable(f.getId().getValue());
01:21:55 ^
01:21:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
01:21:55 RoiResult r = svc.findByImage(image.getId().getValue(),
01:21:55 ^
01:21:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
01:21:55 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
01:21:55 ^
01:21:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
01:21:55 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
01:21:55 ^
01:21:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
01:21:55 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
01:21:55 ^
01:21:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
01:21:55 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
01:21:55 ^
01:21:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:21:55 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
01:21:55 ^
01:21:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:21:55 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
01:21:55 ^
01:21:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:21:55 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
01:21:55 ^
01:21:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:21:55 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
01:21:55 ^
01:21:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Long(long) in Long has been deprecated and marked for removal
01:21:55 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
01:21:55 ^
01:21:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:21:55 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
01:21:55 ^
01:21:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:21:55 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
01:21:55 ^
01:21:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:21:55 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
01:21:55 ^
01:21:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:21:55 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
01:21:55 ^
01:21:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:21:55 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
01:21:55 ^
01:21:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:21:55 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
01:21:55 ^
01:21:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:21:55 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
01:21:55 ^
01:21:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:21:55 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
01:21:55 ^
01:21:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:21:55 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
01:21:55 ^
01:21:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:21:55 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
01:21:55 ^
01:21:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:21:55 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
01:21:55 ^
01:21:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:21:55 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
01:21:55 ^
01:21:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
01:21:55 svc.getShapeStatsRestricted(
01:21:55 ^
01:21:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
01:21:55 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
01:21:55 ^
01:21:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
01:21:55 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
01:21:55 ^
01:21:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
01:21:56 request.typesToIgnore = Collections.singletonList("TagAnnotation");
01:21:56 ^
01:21:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
01:21:56 request.typesToIgnore = Collections.singletonList("IAnnotationLink");
01:21:56 ^
01:21:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
01:21:56 request.typesToIgnore = Collections.singletonList("Annotation");
01:21:56 ^
01:21:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
01:21:56 request.typesToIgnore = Collections.singletonList("Annotation");
01:21:56 ^
01:21:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
01:21:56 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
01:21:56 ^
01:21:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
01:21:56 p2.setRelatedTo(p1);
01:21:56 ^
01:21:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
01:21:56 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
01:21:56 ^
01:21:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
01:21:56 pixels1.setRelatedTo(pixels2);
01:21:56 ^
01:21:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
01:21:56 Pixels pixels = pixels1.getRelatedTo();
01:21:56 ^
01:21:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
01:21:56 Assert.assertNull(pixels1.getRelatedTo());
01:21:56 ^
01:21:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
01:21:56 pixels1.setRelatedTo(pixels2);
01:21:56 ^
01:21:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
01:21:56 Pixels pixels = pixels1.getRelatedTo();
01:21:56 ^
01:21:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
01:21:56 Assert.assertNull(pixels1.getRelatedTo());
01:21:56 ^
01:21:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:21:56 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
01:21:56 ^
01:21:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:21:56 l = svc.getRoiMeasurements(image.getId().getValue(), options);
01:21:56 ^
01:21:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:21:56 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
01:21:56 ^
01:21:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:21:56 l = svc.getRoiMeasurements(image.getId().getValue(), options);
01:21:56 ^
01:21:56Note: Some input files use unchecked or unsafe operations.
01:21:56Note: Recompile with -Xlint:unchecked for details.
01:21:5691 warnings
01:21:56Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_1627474715.tmp
01:21:56Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar
01:21:57:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:21:57:: delivering :: omero#OmeroJava-test;working@5037f1a69d97 :: 5.6.3-614-46d99bded2-ice36-b5 :: integration :: Fri Jul 10 01:21:40 UTC 2026
01:21:57 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml
01:21:57:: publishing :: omero#OmeroJava-test
01:21:57 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-614-46d99bded2-ice36-b5.jar
01:21:57 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-614-46d99bded2-ice36-b5.xml
01:21:5701:21:57build-eclipse:
01:21:57No sub-builds to iterate on
01:21:57Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
01:21:5701:21:57retrieve:
01:21:57:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
01:21:57:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:22:0201:22:02prepare:
01:22:02Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
01:22:0601:22:06release-clients:
01:22:06Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-614-46d99bded2-ice36-b5.zip
01:22:1201:22:12release-zip:
01:22:12Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-614-46d99bded2-ice36-b5.zip
01:22:2401:22:24BUILD SUCCESSFUL
01:22:24Total time: 3 minutes 13 seconds
01:22:24++ '[' -d .git ']'
01:22:24++ python3 ./build.py release-src
01:22:24Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
01:22:2501:22:25release-src-git:
01:22:25Releasing openmicroscopy-5.6.3-614-46d99bded2-ice36-b5
01:22:27 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-614-46d99bded2-ice36-b5.zip
01:22:27 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-614-46d99bded2-ice36-b5-base.zip
01:22:2801:22:28BUILD SUCCESSFUL
01:22:28Total time: 4 seconds
01:22:28++ echo BUILD_NUMBER=5
01:22:28++ echo OMERO_BRANCH=merge_ci
01:22:28++ git_info
01:22:28+++ git rev-parse HEAD
01:22:28++ HEAD=46d99bded239515ad66c1cf748504c5126ef857a
01:22:28++ git log --max-count=1 46d99bded239515ad66c1cf748504c5126ef857a
01:22:28++ env
01:22:28++ sort
01:22:28Archiving artifacts
01:22:45Finished: SUCCESS
