14:59:06Started by upstream project "Trigger" build number 2414:59:06originally caused by:
14:59:06 Started by user devspace14:59:06Running as SYSTEM
14:59:06Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
14:59:06The recommended git tool is: NONE
14:59:06No credentials specified
14:59:06 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10
14:59:06Fetching changes from the remote Git repository
14:59:06 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
14:59:06Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git14:59:06 > git --version # timeout=10
14:59:06 > git --version # 'git version 2.47.3'
14:59:06 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
14:59:08 > git rev-parse origin/merge_ci^{commit} # timeout=10
14:59:08Checking out Revision d52c0e2f83e8feb78419eda02dec53d1bb9207d6 (origin/merge_ci)
14:59:08 > git config core.sparsecheckout # timeout=10
14:59:08 > git checkout -f d52c0e2f83e8feb78419eda02dec53d1bb9207d6 # timeout=10
14:59:08Commit message: "Add version.properties to etc/omero.properties"
14:59:08 > git rev-list --no-walk 8213c47762edead35523b708e0cf6e82f096e796 # timeout=10
14:59:08Cleaning workspace
14:59:08 > git rev-parse --verify HEAD # timeout=10
14:59:08Resetting working tree
14:59:08 > git reset --hard # timeout=10
14:59:08 > git clean -fdx # timeout=10
14:59:09Copied 6 artifacts from "OMERO-python-superbuild-build" build number 614:59:09[OMERO-build] $ /bin/bash -xe /tmp/jenkins3693649379277060113.sh
14:59:09+ mv omero-scripts/dist/omero_scripts-5.9.2.dev0.tar.gz .
14:59:09+ cd src
14:59:09+ export OMERO_BRANCH=merge_ci
14:59:09+ OMERO_BRANCH=merge_ci
14:59:09+ OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
14:59:09+ rm -rf /home/omero/workspace/OMERO-build/omero-virtualenv
14:59:09+ source /home/omero/settings.env
14:59:09++ OMERO_DB_HOST=pg
14:59:09++ OMERO_DB_USER=postgres
14:59:09++ OMERO_DB_PASS=
14:59:09++ OMERO_ROOT_PASS=omero
14:59:09++ OMERO_DATA_DIR=/OMERO
14:59:09++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
14:59:09+ python3.11 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
14:59:12+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl14:59:12Collecting zeroc-ice==3.6.5
14:59:13 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
14:59:15 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 15.2 MB/s eta 0:00:00
14:59:15Installing collected packages: zeroc-ice
14:59:16Successfully installed zeroc-ice-3.6.5
14:59:1614:59:16[notice] A new release of pip available: 22.3.1 -> 25.3
14:59:16[notice] To update, run: python3.11 -m pip install --upgrade pip
14:59:16+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U 'setuptools<66' omero-py
14:59:16Requirement already satisfied: setuptools<66 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (65.5.1)
14:59:16Collecting setuptools<66
14:59:16 Using cached setuptools-65.7.0-py3-none-any.whl (1.2 MB)
14:59:17Collecting omero-py
14:59:17 Using cached omero_py-5.21.3-py3-none-any.whl (2.8 MB)
14:59:17Collecting appdirs
14:59:17 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
14:59:17Collecting future
14:59:17 Using cached future-1.0.0-py3-none-any.whl (491 kB)
14:59:17Collecting numpy<3
14:59:18 Using cached numpy-2.4.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.6 MB)
14:59:18Collecting Pillow>=10.0.0
14:59:18 Downloading pillow-12.1.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (7.0 MB)
14:59:19 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 7.0/7.0 MB 21.4 MB/s eta 0:00:00
14:59:19Collecting PyYAML
14:59:19 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB)
14:59:19Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (from omero-py) (3.6.5)
14:59:19Collecting requests
14:59:19 Using cached requests-2.32.5-py3-none-any.whl (64 kB)
14:59:19Collecting portalocker
14:59:19 Using cached portalocker-3.2.0-py3-none-any.whl (22 kB)
14:59:19Collecting charset_normalizer<4,>=2
14:59:19 Using cached charset_normalizer-3.4.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (151 kB)
14:59:19Collecting idna<4,>=2.5
14:59:19 Using cached idna-3.11-py3-none-any.whl (71 kB)
14:59:19Collecting urllib3<3,>=1.21.1
14:59:19 Using cached urllib3-2.6.2-py3-none-any.whl (131 kB)
14:59:19Collecting certifi>=2017.4.17
14:59:20 Using cached certifi-2025.11.12-py3-none-any.whl (159 kB)
14:59:20Installing collected packages: appdirs, urllib3, setuptools, PyYAML, portalocker, Pillow, numpy, idna, future, charset_normalizer, certifi, requests, omero-py
14:59:20 Attempting uninstall: setuptools
14:59:20 Found existing installation: setuptools 65.5.1
14:59:20 Uninstalling setuptools-65.5.1:
14:59:20 Successfully uninstalled setuptools-65.5.1
14:59:25Successfully installed Pillow-12.1.0 PyYAML-6.0.3 appdirs-1.4.4 certifi-2025.11.12 charset_normalizer-3.4.4 future-1.0.0 idna-3.11 numpy-2.4.0 omero-py-5.21.3 portalocker-3.2.0 requests-2.32.5 setuptools-65.7.0 urllib3-2.6.2
14:59:2514:59:25[notice] A new release of pip available: 22.3.1 -> 25.3
14:59:25[notice] To update, run: python3.11 -m pip install --upgrade pip
14:59:25+ source /home/omero/workspace/OMERO-build/omero-virtualenv/bin/activate
14:59:25++ deactivate nondestructive
14:59:25++ '[' -n '' ']'
14:59:25++ '[' -n '' ']'
14:59:25++ hash -r
14:59:25++ '[' -n '' ']'
14:59:25++ unset VIRTUAL_ENV
14:59:25++ unset VIRTUAL_ENV_PROMPT
14:59:25++ '[' '!' nondestructive = nondestructive ']'
14:59:25++ VIRTUAL_ENV=/home/omero/workspace/OMERO-build/omero-virtualenv
14:59:25++ export VIRTUAL_ENV
14:59:25++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
14:59:25++ PATH=/home/omero/workspace/OMERO-build/omero-virtualenv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
14:59:25++ export PATH
14:59:25++ '[' -n '' ']'
14:59:25++ '[' -z '' ']'
14:59:25++ _OLD_VIRTUAL_PS1=
14:59:25++ PS1='(omero-virtualenv) '
14:59:25++ export PS1
14:59:25++ VIRTUAL_ENV_PROMPT='(omero-virtualenv) '
14:59:25++ export VIRTUAL_ENV_PROMPT
14:59:25++ hash -r
14:59:25+ source docs/hudson/OMERO.sh
14:59:25++ set -e
14:59:25++ set -u
14:59:25++ set -x
14:59:25++ source docs/hudson/functions.sh
14:59:25++ echo Building merge_ci
14:59:25Building merge_ci
14:59:25++ python3 ./build.py build-dev release-all
14:59:25Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
14:59:2614:59:26check-ivy:
14:59:26Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
14:59:26Created dir: /home/omero/workspace/OMERO-build/src/target
14:59:26:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
14:59:26:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
14:59:2714:59:27build-scons:
14:59:27Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
14:59:27No sub-builds to iterate on
14:59:27Entering /home/omero/workspace/OMERO-build/src/components/tools...
14:59:2714:59:27buildlist:
14:59:27:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
14:59:27:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
14:59:2714:59:27clean:
14:59:27Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
14:59:27Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
14:59:2814:59:28python-clean:
14:59:28WARNING: '' not a valid package name; please use only .-separated package names in setup.py
14:59:28/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-578-d52c0e2f83-ice36-b6') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
14:59:28 warnings.warn(
14:59:28running clean
14:59:28Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
14:59:28Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
14:59:2814:59:28python-clean:
14:59:28WARNING: '' not a valid package name; please use only .-separated package names in setup.py
14:59:28/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-578-d52c0e2f83-ice36-b6') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
14:59:28 warnings.warn(
14:59:28running clean
14:59:28Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
14:59:28Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
14:59:28Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
14:59:28Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
14:59:2814:59:28python-clean:
14:59:28WARNING: '' not a valid package name; please use only .-separated package names in setup.py
14:59:28/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-578-d52c0e2f83-ice36-b6') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
14:59:28 warnings.warn(
14:59:28running clean
14:59:28Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
14:59:28Deleting directory /home/omero/workspace/OMERO-build/src/target
14:59:2814:59:28build-scons:
14:59:28Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
14:59:2814:59:28build:
14:59:28No sub-builds to iterate on
14:59:28Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
14:59:29Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
14:59:29Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
14:59:29Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
14:59:2914:59:29tools-init:
14:59:29no-op
14:59:2914:59:29retrieve:
14:59:29:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
14:59:29:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
14:59:30WARNING: An illegal reflective access operation has occurred
14:59:30WARNING: Illegal reflective access by org.apache.ivy.util.url.IvyAuthenticator (file:/home/omero/workspace/OMERO-build/src/lib/repository/ivy-2.4.0.jar) to field java.net.Authenticator.theAuthenticator
14:59:30WARNING: Please consider reporting this to the maintainers of org.apache.ivy.util.url.IvyAuthenticator
14:59:30WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
14:59:30WARNING: All illegal access operations will be denied in a future release
15:00:3115:00:31prepare:
15:00:31Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
15:00:31Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
15:00:31Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
15:00:31Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
15:00:31Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
15:00:31Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
15:00:31Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
15:00:31Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
15:00:31Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
15:00:31Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
15:00:31Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
15:00:31Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
15:00:31Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
15:00:31Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
15:00:31Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
15:00:3115:00:31pre-compile:
15:00:31Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
15:00:31Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
15:00:31Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
15:00:31Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
15:00:31Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
15:00:3115:00:31compile:
15:00:31no-op
15:00:3115:00:31package:
15:00:31Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
15:00:3215:00:32install:
15:00:32:: delivering :: omero#omero_client;working@ae19421db1ea :: 5.6.3-578-d52c0e2f83-ice36-b6 :: integration :: Sat Jan 03 14:59:29 UTC 2026
15:00:32 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
15:00:32:: publishing :: omero#omero_client
15:00:32 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-578-d52c0e2f83-ice36-b6/omero_client-5.6.3-578-d52c0e2f83-ice36-b6.jar
15:00:32 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-578-d52c0e2f83-ice36-b6/omero_client-5.6.3-578-d52c0e2f83-ice36-b6.xml
15:00:32Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
15:00:32Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
15:00:3215:00:32retrieve:
15:00:32:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
15:00:32:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
15:00:32Entering /home/omero/workspace/OMERO-build/src/components/tools...
15:00:3215:00:32dist:
15:00:32Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
15:00:32Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
15:00:32Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
15:00:32Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.9.2.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
15:00:32Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
15:00:32Copying 29 files to /home/omero/workspace/OMERO-build/src/dist
15:00:32Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
15:00:32Entering /home/omero/workspace/OMERO-build/src/components/tests...
15:00:32Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
15:00:3315:00:33copy-licenses:
15:00:33Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
15:00:33Created dir: /home/omero/workspace/OMERO-build/src/dist/share
15:00:33Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
15:00:3315:00:33copy-history:
15:00:33Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
15:00:3315:00:33copy-etc:
15:00:33Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
15:00:33Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
15:00:3315:00:33copy-sql:
15:00:33Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
15:00:4215:00:42copy-server:
15:00:42 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.1.9 won
15:00:4215:00:42copy-client:
15:00:42Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
15:00:43 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.1.9 won
15:00:4315:00:43update-version:
15:00:43Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
15:00:4315:00:43create-workdirs:
15:00:43Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
15:00:43Created dir: /home/omero/workspace/OMERO-build/src/dist/var
15:00:43Created dir: /home/omero/workspace/OMERO-build/src/dist/var/tmp
15:00:4315:00:43copy-luts:
15:00:43Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
15:00:43Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
15:00:4315:00:43test-compile:
15:00:43:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
15:00:43Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
15:00:43Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
15:00:43Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
15:00:43Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
15:00:43Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
15:00:43Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
15:00:43Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
15:00:4415:00:44testng-init:
15:00:44:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
15:00:44:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
15:00:4715:00:47,683 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.16
15:00:4715:00:47,686 |-INFO in ch.qos.logback.classic.util.ContextInitializer@18809db8 - No custom configurators were discovered as a service.
15:00:4715:00:47,686 |-INFO in ch.qos.logback.classic.util.ContextInitializer@18809db8 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
15:00:4715:00:47,689 |-INFO in ch.qos.logback.classic.util.ContextInitializer@18809db8 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
15:00:4715:00:47,690 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
15:00:4715:00:47,690 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
15:00:4715:00:47,691 |-INFO in ch.qos.logback.classic.util.ContextInitializer@18809db8 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
15:00:4715:00:47,691 |-INFO in ch.qos.logback.classic.util.ContextInitializer@18809db8 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
15:00:4715:00:47,693 |-INFO in ch.qos.logback.classic.util.ContextInitializer@18809db8 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
15:00:4715:00:47,693 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
15:00:4715:00:47,693 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
15:00:4715:00:47,694 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@c34e260 - Resource [logback.xml] occurs multiple times on the classpath.
15:00:4715:00:47,694 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@c34e260 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
15:00:4715:00:47,694 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@c34e260 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
15:00:4715:00:47,889 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
15:00:4715:00:47,889 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
15:00:4715:00:47,908 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
15:00:4715:00:47,909 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@39342312 - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
15:00:4715:00:47,909 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@39342312 - Please move "immediateFlush" property into the enclosing appender.
15:00:4715:00:47,975 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@39342312 - Setting the "immediateFlush" property of the enclosing appender to true
15:00:4715:00:47,975 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
15:00:4715:00:47,976 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
15:00:4715:00:47,976 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
15:00:4715:00:47,976 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
15:00:4715:00:47,976 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
15:00:4715:00:47,976 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
15:00:4715:00:47,977 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@243fe859 - End of configuration.
15:00:4715:00:47,979 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@384edc3b - Registering current configuration as safe fallback point
15:00:4715:00:47,979 |-INFO in ch.qos.logback.classic.util.ContextInitializer@18809db8 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 286 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
15:00:4715:00:47lifecycle.test-compile:
15:00:47Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
15:00:48Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
15:00:48warning: [options] bootstrap class path not set in conjunction with -source 8
15:00:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
15:00:49import omero.grid.RawAccessRequest;
15:00:49 ^
15:00:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
15:00:49import omero.grid.RawAccessRequest;
15:00:49 ^
15:00:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
15:00:49import omero.grid.RawAccessRequest;
15:00:49 ^
15:00:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
15:00:49import omero.model.ImportJob;
15:00:49 ^
15:00:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
15:00:49import omero.model.ImportJobI;
15:00:49 ^
15:00:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated
15:00:50 IObject link = (IObject) linkClass.newInstance();
15:00:50 ^
15:00:50 where T is a type-variable:
15:00:50 T extends Object declared in class Class
15:00:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
15:00:50 T copy = (T) obj.getClass().newInstance();
15:00:50 ^
15:00:50 where T is a type-variable:
15:00:50 T extends Object declared in class Class
15:00:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
15:00:50 RawAccessRequest raw = new RawAccessRequest();
15:00:50 ^
15:00:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
15:00:50 RawAccessRequest raw = new RawAccessRequest();
15:00:50 ^
15:00:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
15:00:50 raw.repoUuid = legacy.root().getHash().getValue();
15:00:50 ^
15:00:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
15:00:50 raw.command = "rm";
15:00:50 ^
15:00:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
15:00:50 raw.args = Arrays.asList(path);
15:00:50 ^
15:00:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
15:00:50 final IObject link = linkClass.newInstance();
15:00:50 ^
15:00:50 where T is a type-variable:
15:00:50 T extends Object declared in class Class
15:00:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
15:00:51 originalLink.setChild(annotationClass.newInstance());
15:00:51 ^
15:00:51 where T is a type-variable:
15:00:51 T extends Object declared in class Class
15:00:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
15:00:51 RoiResult r = svc.findByImage(id, new RoiOptions());
15:00:51 ^
15:00:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
15:00:51 final RawAccessRequest request = new RawAccessRequest();
15:00:51 ^
15:00:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
15:00:51 final RawAccessRequest request = new RawAccessRequest();
15:00:51 ^
15:00:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
15:00:51 request.repoUuid = repo.root().getHash().getValue();
15:00:51 ^
15:00:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
15:00:51 request.command = "exists";
15:00:51 ^
15:00:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
15:00:51 request.args = Collections.singletonList(dirPath);
15:00:51 ^
15:00:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
15:00:51 final RawAccessRequest request = new RawAccessRequest();
15:00:51 ^
15:00:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
15:00:51 final RawAccessRequest request = new RawAccessRequest();
15:00:51 ^
15:00:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
15:00:51 request.repoUuid = repo.root().getHash().getValue();
15:00:51 ^
15:00:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
15:00:51 request.command = "exists";
15:00:51 ^
15:00:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
15:00:51 request.args = Collections.singletonList(dirName);
15:00:51 ^
15:00:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
15:00:51 final ImportJob importJob = new ImportJobI();
15:00:51 ^
15:00:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
15:00:51 final ImportJob importJob = new ImportJobI();
15:00:51 ^
15:00:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
15:00:51 importJob.setImageName(omero.rtypes.rstring(name));
15:00:51 ^
15:00:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
15:00:51 importJob.setImageDescription(omero.rtypes.rstring(desc));
15:00:51 ^
15:00:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
15:00:51 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
15:00:51 ^
15:00:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
15:00:51 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
15:00:51 ^
15:00:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
15:00:51 final String savedName = sent.getImageName().getValue().toString();
15:00:51 ^
15:00:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
15:00:51 final String savedDesc = sent.getImageDescription().getValue().toString();
15:00:51 ^
15:00:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
15:00:51 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
15:00:51 ^
15:00:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
15:00:51 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
15:00:51 ^
15:00:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
15:00:51 final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
15:00:51 ^
15:00:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
15:00:51 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
15:00:51 ^
15:00:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
15:00:52 RoiResult r = svc.findByImage(image.getId().getValue(),
15:00:52 ^
15:00:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
15:00:52 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
15:00:52 ^
15:00:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
15:00:52 l = svc.getRoiMeasurements(image.getId().getValue(), options);
15:00:52 ^
15:00:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
15:00:52 l = svc.getRoiMeasurements(image.getId().getValue(), options);
15:00:52 ^
15:00:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
15:00:52 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
15:00:52 ^
15:00:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
15:00:52 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
15:00:52 ^
15:00:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
15:00:52 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
15:00:52 ^
15:00:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
15:00:52 table = svc.getTable(f.getId().getValue());
15:00:52 ^
15:00:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
15:00:52 RoiResult r = svc.findByImage(image.getId().getValue(),
15:00:52 ^
15:00:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
15:00:52 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
15:00:52 ^
15:00:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
15:00:52 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
15:00:52 ^
15:00:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
15:00:52 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
15:00:52 ^
15:00:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
15:00:52 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
15:00:52 ^
15:00:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
15:00:52 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
15:00:52 ^
15:00:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
15:00:52 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
15:00:52 ^
15:00:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
15:00:52 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
15:00:52 ^
15:00:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
15:00:52 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
15:00:52 ^
15:00:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Long(long) in Long has been deprecated
15:00:52 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
15:00:52 ^
15:00:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
15:00:52 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
15:00:52 ^
15:00:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
15:00:52 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
15:00:52 ^
15:00:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
15:00:52 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
15:00:52 ^
15:00:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
15:00:52 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
15:00:52 ^
15:00:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
15:00:52 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
15:00:52 ^
15:00:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
15:00:52 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
15:00:52 ^
15:00:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
15:00:52 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
15:00:52 ^
15:00:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
15:00:52 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
15:00:52 ^
15:00:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
15:00:52 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
15:00:52 ^
15:00:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
15:00:52 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
15:00:52 ^
15:00:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
15:00:52 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
15:00:52 ^
15:00:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
15:00:52 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
15:00:52 ^
15:00:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
15:00:52 svc.getShapeStatsRestricted(
15:00:52 ^
15:00:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
15:00:52 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
15:00:52 ^
15:00:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
15:00:52 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
15:00:52 ^
15:00:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
15:00:52 request.typesToIgnore = Collections.singletonList("TagAnnotation");
15:00:52 ^
15:00:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
15:00:52 request.typesToIgnore = Collections.singletonList("IAnnotationLink");
15:00:52 ^
15:00:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
15:00:52 request.typesToIgnore = Collections.singletonList("Annotation");
15:00:52 ^
15:00:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
15:00:52 request.typesToIgnore = Collections.singletonList("Annotation");
15:00:52 ^
15:00:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
15:00:52 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
15:00:52 ^
15:00:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
15:00:52 p2.setRelatedTo(p1);
15:00:52 ^
15:00:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
15:00:52 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
15:00:52 ^
15:00:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
15:00:52 pixels1.setRelatedTo(pixels2);
15:00:52 ^
15:00:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
15:00:52 Pixels pixels = pixels1.getRelatedTo();
15:00:52 ^
15:00:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
15:00:52 Assert.assertNull(pixels1.getRelatedTo());
15:00:52 ^
15:00:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
15:00:52 pixels1.setRelatedTo(pixels2);
15:00:52 ^
15:00:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
15:00:52 Pixels pixels = pixels1.getRelatedTo();
15:00:52 ^
15:00:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
15:00:52 Assert.assertNull(pixels1.getRelatedTo());
15:00:52 ^
15:00:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
15:00:52 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
15:00:52 ^
15:00:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
15:00:52 l = svc.getRoiMeasurements(image.getId().getValue(), options);
15:00:52 ^
15:00:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
15:00:52 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
15:00:52 ^
15:00:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
15:00:52 l = svc.getRoiMeasurements(image.getId().getValue(), options);
15:00:52 ^
15:00:52Note: Some input files use unchecked or unsafe operations.
15:00:52Note: Recompile with -Xlint:unchecked for details.
15:00:5288 warnings
15:00:52Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_18198439.tmp
15:00:52Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar
15:00:52:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
15:00:52:: delivering :: omero#OmeroJava-test;working@ae19421db1ea :: 5.6.3-578-d52c0e2f83-ice36-b6 :: integration :: Sat Jan 03 15:00:43 UTC 2026
15:00:52 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml
15:00:52:: publishing :: omero#OmeroJava-test
15:00:52 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-578-d52c0e2f83-ice36-b6.jar
15:00:52 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-578-d52c0e2f83-ice36-b6.xml
15:00:5215:00:52build-eclipse:
15:00:52No sub-builds to iterate on
15:00:52Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
15:00:5315:00:53retrieve:
15:00:53:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
15:00:53:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
15:00:5515:00:55prepare:
15:00:55Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
15:00:5615:00:56release-clients:
15:00:56Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-578-d52c0e2f83-ice36-b6.zip
15:01:0115:01:01release-zip:
15:01:01Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6.zip
15:01:1115:01:11BUILD SUCCESSFUL
15:01:11Total time: 1 minute 45 seconds
15:01:11++ '[' -d .git ']'
15:01:11++ python3 ./build.py release-src
15:01:11Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
15:01:1115:01:11release-src-git:
15:01:11Releasing openmicroscopy-5.6.3-578-d52c0e2f83-ice36-b6
15:01:13 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-578-d52c0e2f83-ice36-b6.zip
15:01:13 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-578-d52c0e2f83-ice36-b6-base.zip
15:01:1415:01:14BUILD SUCCESSFUL
15:01:14Total time: 3 seconds
15:01:14++ echo BUILD_NUMBER=6
15:01:14++ echo OMERO_BRANCH=merge_ci
15:01:14++ git_info
15:01:14+++ git rev-parse HEAD
15:01:14++ HEAD=d52c0e2f83e8feb78419eda02dec53d1bb9207d6
15:01:14++ git log --max-count=1 d52c0e2f83e8feb78419eda02dec53d1bb9207d6
15:01:14++ env
15:01:14++ sort
15:01:14Archiving artifacts
15:01:30Finished: SUCCESS
