09:56:54Started by upstream project "Trigger" build number 909:56:54originally caused by:
09:56:54 Started by user devspace09:56:54Running as SYSTEM
09:56:54Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
09:56:54The recommended git tool is: NONE
09:56:54No credentials specified
09:56:55 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10
09:56:55Fetching changes from the remote Git repository
09:56:55 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
09:56:55Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git09:56:55 > git --version # timeout=10
09:56:55 > git --version # 'git version 2.39.3'
09:56:55 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
09:56:57 > git rev-parse origin/merge_ci^{commit} # timeout=10
09:56:57Checking out Revision 4311821d91f6e298d1c318b0dccca25bb97b7502 (origin/merge_ci)
09:56:57 > git config core.sparsecheckout # timeout=10
09:56:57 > git checkout -f 4311821d91f6e298d1c318b0dccca25bb97b7502 # timeout=10
09:56:58Commit message: "Add version.properties to etc/omero.properties"
09:56:58 > git rev-list --no-walk 03ab3324c08fafdd78957eabeb78da88e268ff0b # timeout=10
09:56:58Cleaning workspace
09:56:58 > git rev-parse --verify HEAD # timeout=10
09:56:58Resetting working tree
09:56:58 > git reset --hard # timeout=10
09:56:58 > git clean -fdx # timeout=10
09:56:59Copied 6 artifacts from "OMERO-python-superbuild-build" build number 609:56:59[OMERO-build] $ /bin/bash -xe /tmp/jenkins10993034212909260354.sh
09:56:59+ mv omero-scripts/dist/omero-scripts-5.8.1.dev0.tar.gz .
09:56:59+ cd src
09:56:59+ export OMERO_BRANCH=merge_ci
09:56:59+ OMERO_BRANCH=merge_ci
09:56:59+ OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
09:56:59+ source /home/omero/settings.env
09:56:59++ OMERO_DB_HOST=pg
09:56:59++ OMERO_DB_USER=postgres
09:56:59++ OMERO_DB_PASS=
09:56:59++ OMERO_ROOT_PASS=omero
09:56:59++ OMERO_DATA_DIR=/OMERO
09:56:59++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
09:56:59+ python3 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
09:57:01+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl09:57:02Collecting zeroc-ice==3.6.5
09:57:03 Downloading https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl (31.3 MB)
09:57:04WARNING: You are using pip version 21.2.3; however, version 24.0 is available.
09:57:04You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command.
09:57:04+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U setuptools omero-py
09:57:05Requirement already satisfied: setuptools in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (69.2.0)
09:57:05Requirement already satisfied: omero-py in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (5.19.0)
09:57:06Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (3.6.5)
09:57:06Requirement already satisfied: numpy in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.4)
09:57:06Requirement already satisfied: Pillow>=10.0.0 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (10.2.0)
09:57:06Requirement already satisfied: requests in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.31.0)
09:57:06Requirement already satisfied: portalocker in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.8.2)
09:57:06Requirement already satisfied: appdirs in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.4.4)
09:57:06Requirement already satisfied: future in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.0.0)
09:57:06Requirement already satisfied: PyYAML in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (6.0.1)
09:57:06Requirement already satisfied: urllib3<2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.18)
09:57:06Requirement already satisfied: idna<4,>=2.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.6)
09:57:06Requirement already satisfied: certifi>=2017.4.17 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (2024.2.2)
09:57:06Requirement already satisfied: charset-normalizer<4,>=2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.3.2)
09:57:06WARNING: You are using pip version 21.2.3; however, version 24.0 is available.
09:57:06You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command.
09:57:06+ source docs/hudson/OMERO.sh
09:57:06++ set -e
09:57:06++ set -u
09:57:06++ set -x
09:57:06++ source docs/hudson/functions.sh
09:57:06++ echo Building merge_ci
09:57:06Building merge_ci
09:57:06++ python3 ./build.py build-dev release-all
09:57:06OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0
09:57:06Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
09:57:0609:57:06check-ivy:
09:57:06Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
09:57:06Created dir: /home/omero/workspace/OMERO-build/src/target
09:57:07:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
09:57:07:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
09:57:0809:57:08build-scons:
09:57:08Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
09:57:08No sub-builds to iterate on
09:57:08Entering /home/omero/workspace/OMERO-build/src/components/tools...
09:57:0809:57:08buildlist:
09:57:08:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
09:57:08:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
09:57:0809:57:08clean:
09:57:08Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
09:57:08Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
09:57:0809:57:08python-clean:
09:57:08WARNING: '' not a valid package name; please use only .-separated package names in setup.py
09:57:08/usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-437-4311821d91-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
09:57:08 warnings.warn(
09:57:08running clean
09:57:09Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
09:57:09Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
09:57:0909:57:09python-clean:
09:57:09WARNING: '' not a valid package name; please use only .-separated package names in setup.py
09:57:09/usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-437-4311821d91-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
09:57:09 warnings.warn(
09:57:09running clean
09:57:09Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
09:57:09Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
09:57:09Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
09:57:09Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
09:57:0909:57:09python-clean:
09:57:09WARNING: '' not a valid package name; please use only .-separated package names in setup.py
09:57:09/usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-437-4311821d91-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
09:57:09 warnings.warn(
09:57:09running clean
09:57:09Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
09:57:09Deleting directory /home/omero/workspace/OMERO-build/src/target
09:57:0909:57:09build-scons:
09:57:09Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
09:57:0909:57:09build:
09:57:09No sub-builds to iterate on
09:57:09Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
09:57:09Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
09:57:09Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
09:57:09Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
09:57:0909:57:09tools-init:
09:57:09no-op
09:57:1009:57:10retrieve:
09:57:10:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
09:57:10:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
09:57:10WARNING: An illegal reflective access operation has occurred
09:57:10WARNING: Illegal reflective access by org.apache.ivy.util.url.IvyAuthenticator (file:/home/omero/workspace/OMERO-build/src/lib/repository/ivy-2.4.0.jar) to field java.net.Authenticator.theAuthenticator
09:57:10WARNING: Please consider reporting this to the maintainers of org.apache.ivy.util.url.IvyAuthenticator
09:57:10WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
09:57:10WARNING: All illegal access operations will be denied in a future release
09:58:0609:58:06prepare:
09:58:06Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
09:58:06Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
09:58:06Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
09:58:06Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
09:58:06Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
09:58:06Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
09:58:06Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
09:58:06Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
09:58:06Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
09:58:06Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
09:58:06Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
09:58:06Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
09:58:06Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
09:58:06Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
09:58:06Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
09:58:0609:58:06pre-compile:
09:58:06Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
09:58:06Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
09:58:07Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
09:58:07Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
09:58:07Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
09:58:0709:58:07compile:
09:58:07no-op
09:58:0709:58:07package:
09:58:07Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
09:58:0709:58:07install:
09:58:07:: delivering :: omero#omero_client;working@06339221e627 :: 5.6.3-437-4311821d91-ice36 :: integration :: Wed Mar 20 09:57:09 UTC 2024
09:58:07 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
09:58:07:: publishing :: omero#omero_client
09:58:07 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-437-4311821d91-ice36/omero_client-5.6.3-437-4311821d91-ice36.jar
09:58:07 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-437-4311821d91-ice36/omero_client-5.6.3-437-4311821d91-ice36.xml
09:58:07Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
09:58:07Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
09:58:0809:58:08retrieve:
09:58:08:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
09:58:08:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
09:58:08Entering /home/omero/workspace/OMERO-build/src/components/tools...
09:58:0809:58:08dist:
09:58:08Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
09:58:08Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
09:58:08Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
09:58:08Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero-scripts-5.8.1.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
09:58:08Copying 28 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
09:58:08Copying 28 files to /home/omero/workspace/OMERO-build/src/dist
09:58:08Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
09:58:08Entering /home/omero/workspace/OMERO-build/src/components/tests...
09:58:08Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
09:58:0809:58:08copy-licenses:
09:58:08Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
09:58:08Created dir: /home/omero/workspace/OMERO-build/src/dist/share
09:58:08Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
09:58:0809:58:08copy-history:
09:58:08Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
09:58:0809:58:08copy-etc:
09:58:08Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
09:58:08Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
09:58:0809:58:08copy-sql:
09:58:08Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
09:58:2409:58:24copy-server:
09:58:24 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.0.11 won
09:58:24 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/annotations.jar in [server]: 2.17.100 won
09:58:2409:58:24copy-client:
09:58:24Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
09:58:25 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.0.11 won
09:58:25 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/annotations.jar in [client]: 2.17.100 won
09:58:2509:58:25update-version:
09:58:25Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
09:58:2509:58:25create-workdirs:
09:58:25Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
09:58:25Created dir: /home/omero/workspace/OMERO-build/src/dist/var
09:58:2509:58:25copy-luts:
09:58:25Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
09:58:25Copying 39 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
09:58:2509:58:25test-compile:
09:58:25:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
09:58:25Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
09:58:25Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
09:58:25Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
09:58:25Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
09:58:25Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
09:58:25Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
09:58:25Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
09:58:2609:58:26testng-init:
09:58:26:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
09:58:26:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
09:58:2909:58:29,288 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
09:58:2909:58:29,291 |-INFO in ch.qos.logback.classic.util.ContextInitializer@60a64104 - No custom configurators were discovered as a service.
09:58:2909:58:29,291 |-INFO in ch.qos.logback.classic.util.ContextInitializer@60a64104 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
09:58:2909:58:29,295 |-INFO in ch.qos.logback.classic.util.ContextInitializer@60a64104 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
09:58:2909:58:29,295 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
09:58:2909:58:29,295 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
09:58:2909:58:29,296 |-INFO in ch.qos.logback.classic.util.ContextInitializer@60a64104 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
09:58:2909:58:29,296 |-INFO in ch.qos.logback.classic.util.ContextInitializer@60a64104 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
09:58:2909:58:29,298 |-INFO in ch.qos.logback.classic.util.ContextInitializer@60a64104 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
09:58:2909:58:29,298 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
09:58:2909:58:29,299 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
09:58:2909:58:29,300 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@12ceff30 - Resource [logback.xml] occurs multiple times on the classpath.
09:58:2909:58:29,300 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@12ceff30 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
09:58:2909:58:29,300 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@12ceff30 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
09:58:2909:58:29,514 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
09:58:2909:58:29,514 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
09:58:2909:58:29,534 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
09:58:2909:58:29,536 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@2d550996 - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
09:58:2909:58:29,536 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@2d550996 - Please move "immediateFlush" property into the enclosing appender.
09:58:2909:58:29,601 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@2d550996 - Setting the "immediateFlush" property of the enclosing appender to true
09:58:2909:58:29,602 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
09:58:2909:58:29,602 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
09:58:2909:58:29,602 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
09:58:2909:58:29,602 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
09:58:2909:58:29,602 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
09:58:2909:58:29,602 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
09:58:2909:58:29,603 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@682fec32 - End of configuration.
09:58:2909:58:29,606 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@3ad32e52 - Registering current configuration as safe fallback point
09:58:2909:58:29,606 |-INFO in ch.qos.logback.classic.util.ContextInitializer@60a64104 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 308 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
09:58:2909:58:29lifecycle.test-compile:
09:58:29Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
09:58:29Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
09:58:30warning: [options] bootstrap class path not set in conjunction with -source 8
09:58:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
09:58:31import omero.grid.RawAccessRequest;
09:58:31 ^
09:58:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
09:58:31import omero.grid.RawAccessRequest;
09:58:31 ^
09:58:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
09:58:31import omero.grid.RawAccessRequest;
09:58:31 ^
09:58:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
09:58:31import omero.model.ImportJob;
09:58:31 ^
09:58:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
09:58:31import omero.model.ImportJobI;
09:58:31 ^
09:58:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated
09:58:32 IObject link = (IObject) linkClass.newInstance();
09:58:32 ^
09:58:32 where T is a type-variable:
09:58:32 T extends Object declared in class Class
09:58:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
09:58:32 T copy = (T) obj.getClass().newInstance();
09:58:32 ^
09:58:32 where T is a type-variable:
09:58:32 T extends Object declared in class Class
09:58:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
09:58:32 RawAccessRequest raw = new RawAccessRequest();
09:58:32 ^
09:58:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
09:58:32 RawAccessRequest raw = new RawAccessRequest();
09:58:32 ^
09:58:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
09:58:32 raw.repoUuid = legacy.root().getHash().getValue();
09:58:32 ^
09:58:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
09:58:32 raw.command = "rm";
09:58:32 ^
09:58:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
09:58:32 raw.args = Arrays.asList(path);
09:58:32 ^
09:58:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
09:58:32 final IObject link = linkClass.newInstance();
09:58:32 ^
09:58:32 where T is a type-variable:
09:58:32 T extends Object declared in class Class
09:58:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
09:58:33 originalLink.setChild(annotationClass.newInstance());
09:58:33 ^
09:58:33 where T is a type-variable:
09:58:33 T extends Object declared in class Class
09:58:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
09:58:33 RoiResult r = svc.findByImage(id, new RoiOptions());
09:58:33 ^
09:58:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
09:58:33 final RawAccessRequest request = new RawAccessRequest();
09:58:33 ^
09:58:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
09:58:33 final RawAccessRequest request = new RawAccessRequest();
09:58:33 ^
09:58:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
09:58:33 request.repoUuid = repo.root().getHash().getValue();
09:58:33 ^
09:58:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
09:58:33 request.command = "exists";
09:58:33 ^
09:58:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
09:58:33 request.args = Collections.singletonList(dirPath);
09:58:33 ^
09:58:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
09:58:33 final RawAccessRequest request = new RawAccessRequest();
09:58:33 ^
09:58:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
09:58:33 final RawAccessRequest request = new RawAccessRequest();
09:58:33 ^
09:58:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
09:58:33 request.repoUuid = repo.root().getHash().getValue();
09:58:33 ^
09:58:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
09:58:33 request.command = "exists";
09:58:33 ^
09:58:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
09:58:33 request.args = Collections.singletonList(dirName);
09:58:33 ^
09:58:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
09:58:33 final ImportJob importJob = new ImportJobI();
09:58:33 ^
09:58:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
09:58:33 final ImportJob importJob = new ImportJobI();
09:58:33 ^
09:58:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
09:58:33 importJob.setImageName(omero.rtypes.rstring(name));
09:58:33 ^
09:58:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
09:58:33 importJob.setImageDescription(omero.rtypes.rstring(desc));
09:58:33 ^
09:58:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
09:58:33 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
09:58:33 ^
09:58:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
09:58:33 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
09:58:33 ^
09:58:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
09:58:33 final String savedName = sent.getImageName().getValue().toString();
09:58:33 ^
09:58:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
09:58:33 final String savedDesc = sent.getImageDescription().getValue().toString();
09:58:33 ^
09:58:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
09:58:33 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
09:58:33 ^
09:58:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
09:58:33 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
09:58:33 ^
09:58:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
09:58:33 final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
09:58:33 ^
09:58:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
09:58:33 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
09:58:33 ^
09:58:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
09:58:34 RoiResult r = svc.findByImage(image.getId().getValue(),
09:58:34 ^
09:58:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
09:58:34 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
09:58:34 ^
09:58:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
09:58:34 l = svc.getRoiMeasurements(image.getId().getValue(), options);
09:58:34 ^
09:58:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
09:58:34 l = svc.getRoiMeasurements(image.getId().getValue(), options);
09:58:34 ^
09:58:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
09:58:34 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
09:58:34 ^
09:58:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
09:58:34 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
09:58:34 ^
09:58:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
09:58:34 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
09:58:34 ^
09:58:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
09:58:34 table = svc.getTable(f.getId().getValue());
09:58:34 ^
09:58:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
09:58:34 RoiResult r = svc.findByImage(image.getId().getValue(),
09:58:34 ^
09:58:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
09:58:34 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
09:58:34 ^
09:58:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
09:58:34 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
09:58:34 ^
09:58:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
09:58:34 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
09:58:34 ^
09:58:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
09:58:34 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
09:58:34 ^
09:58:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
09:58:34 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
09:58:34 ^
09:58:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
09:58:34 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
09:58:34 ^
09:58:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
09:58:34 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
09:58:34 ^
09:58:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
09:58:34 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
09:58:34 ^
09:58:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Long(long) in Long has been deprecated
09:58:34 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
09:58:34 ^
09:58:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
09:58:34 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
09:58:34 ^
09:58:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
09:58:34 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
09:58:34 ^
09:58:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
09:58:34 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
09:58:34 ^
09:58:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
09:58:34 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
09:58:34 ^
09:58:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
09:58:34 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
09:58:34 ^
09:58:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
09:58:34 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
09:58:34 ^
09:58:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
09:58:34 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
09:58:34 ^
09:58:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
09:58:34 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
09:58:34 ^
09:58:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
09:58:34 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
09:58:34 ^
09:58:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
09:58:34 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
09:58:34 ^
09:58:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
09:58:34 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
09:58:34 ^
09:58:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
09:58:34 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
09:58:34 ^
09:58:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
09:58:34 svc.getShapeStatsRestricted(
09:58:34 ^
09:58:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
09:58:34 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
09:58:34 ^
09:58:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
09:58:34 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
09:58:34 ^
09:58:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
09:58:34 request.typesToIgnore = Collections.singletonList("TagAnnotation");
09:58:34 ^
09:58:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
09:58:34 request.typesToIgnore = Collections.singletonList("IAnnotationLink");
09:58:34 ^
09:58:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
09:58:34 request.typesToIgnore = Collections.singletonList("Annotation");
09:58:34 ^
09:58:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
09:58:34 request.typesToIgnore = Collections.singletonList("Annotation");
09:58:34 ^
09:58:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
09:58:34 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
09:58:34 ^
09:58:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
09:58:34 p2.setRelatedTo(p1);
09:58:34 ^
09:58:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
09:58:34 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
09:58:34 ^
09:58:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
09:58:34 pixels1.setRelatedTo(pixels2);
09:58:34 ^
09:58:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
09:58:34 Pixels pixels = pixels1.getRelatedTo();
09:58:34 ^
09:58:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
09:58:34 Assert.assertNull(pixels1.getRelatedTo());
09:58:34 ^
09:58:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
09:58:34 pixels1.setRelatedTo(pixels2);
09:58:34 ^
09:58:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
09:58:34 Pixels pixels = pixels1.getRelatedTo();
09:58:34 ^
09:58:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
09:58:34 Assert.assertNull(pixels1.getRelatedTo());
09:58:34 ^
09:58:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
09:58:34 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
09:58:34 ^
09:58:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
09:58:34 l = svc.getRoiMeasurements(image.getId().getValue(), options);
09:58:34 ^
09:58:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
09:58:34 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
09:58:34 ^
09:58:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
09:58:34 l = svc.getRoiMeasurements(image.getId().getValue(), options);
09:58:34 ^
09:58:35Note: Some input files use unchecked or unsafe operations.
09:58:35Note: Recompile with -Xlint:unchecked for details.
09:58:3588 warnings
09:58:35Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_1887349394.tmp
09:58:35Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar
09:58:35:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
09:58:35:: delivering :: omero#OmeroJava-test;working@06339221e627 :: 5.6.3-437-4311821d91-ice36 :: integration :: Wed Mar 20 09:58:25 UTC 2024
09:58:35 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml
09:58:35:: publishing :: omero#OmeroJava-test
09:58:35 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-437-4311821d91-ice36.jar
09:58:35 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-437-4311821d91-ice36.xml
09:58:3509:58:35build-eclipse:
09:58:35No sub-builds to iterate on
09:58:35Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
09:58:3509:58:35retrieve:
09:58:35:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
09:58:35:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
09:58:3809:58:38prepare:
09:58:38Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
09:58:3909:58:39release-clients:
09:58:39Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-437-4311821d91-ice36.zip
09:58:4509:58:45release-zip:
09:58:45Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-437-4311821d91-ice36.zip
09:58:5709:58:57BUILD SUCCESSFUL
09:58:57Total time: 1 minute 51 seconds
09:58:58++ '[' -d .git ']'
09:58:58++ python3 ./build.py release-src
09:58:58OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0
09:58:58Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
09:58:5809:58:58release-src-git:
09:58:58Releasing openmicroscopy-5.6.3-437-4311821d91-ice36
09:58:59 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-437-4311821d91-ice36.zip
09:58:59 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-437-4311821d91-ice36-base.zip
09:59:0109:59:01BUILD SUCCESSFUL
09:59:01Total time: 3 seconds
09:59:01++ echo BUILD_NUMBER=6
09:59:01++ echo OMERO_BRANCH=merge_ci
09:59:01++ git_info
09:59:01+++ git rev-parse HEAD
09:59:01++ HEAD=4311821d91f6e298d1c318b0dccca25bb97b7502
09:59:01++ git log --max-count=1 4311821d91f6e298d1c318b0dccca25bb97b7502
09:59:01++ env
09:59:01++ sort
09:59:01Archiving artifacts
09:59:29Finished: SUCCESS
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