01:50:49Started by upstream project "Trigger" build number 12001:50:49originally caused by:
01:50:49 Started by timer
01:50:49Running as SYSTEM
01:50:49Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
01:50:49The recommended git tool is: NONE
01:50:49No credentials specified
01:50:49 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10
01:50:49Fetching changes from the remote Git repository
01:50:49 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
01:50:49Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git01:50:49 > git --version # timeout=10
01:50:49 > git --version # 'git version 2.39.3'
01:50:49 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
01:50:52 > git rev-parse origin/merge_ci^{commit} # timeout=10
01:50:52Checking out Revision 99dd296a2f9aaefb0165b1ea8ae99b3f0764a271 (origin/merge_ci)
01:50:52 > git config core.sparsecheckout # timeout=10
01:50:52 > git checkout -f 99dd296a2f9aaefb0165b1ea8ae99b3f0764a271 # timeout=10
01:50:52Commit message: "Add version.properties to etc/omero.properties"
01:50:52 > git rev-list --no-walk 3d977bc48eacef0ab9c5c5ead92cc65ae5b7205a # timeout=10
01:50:52Cleaning workspace
01:50:52 > git rev-parse --verify HEAD # timeout=10
01:50:52Resetting working tree
01:50:52 > git reset --hard # timeout=10
01:50:52 > git clean -fdx # timeout=10
01:50:52Copied 6 artifacts from "OMERO-python-superbuild-build" build number 10601:50:52[OMERO-build] $ /bin/bash -xe /tmp/jenkins1957574706322742872.sh
01:50:52+ mv omero-scripts/dist/omero_scripts-5.8.3.dev0.tar.gz .
01:50:52+ cd src
01:50:52+ export OMERO_BRANCH=merge_ci
01:50:52+ OMERO_BRANCH=merge_ci
01:50:52+ OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
01:50:52+ source /home/omero/settings.env
01:50:52++ OMERO_DB_HOST=pg
01:50:52++ OMERO_DB_USER=postgres
01:50:52++ OMERO_DB_PASS=
01:50:52++ OMERO_ROOT_PASS=omero
01:50:52++ OMERO_DATA_DIR=/OMERO
01:50:52++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
01:50:52+ python3 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
01:50:56+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl01:50:58Collecting zeroc-ice==3.6.5
01:50:58 Downloading https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl (31.3 MB)
01:51:00WARNING: You are using pip version 21.2.3; however, version 24.1.1 is available.
01:51:00You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command.
01:51:00+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U setuptools omero-py
01:51:00Requirement already satisfied: setuptools in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (70.1.1)
01:51:01Requirement already satisfied: omero-py in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (5.19.3)
01:51:01Requirement already satisfied: Pillow>=10.0.0 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (10.2.0)
01:51:01Requirement already satisfied: requests in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.31.0)
01:51:01Requirement already satisfied: urllib3<2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.18)
01:51:01Requirement already satisfied: appdirs in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.4.4)
01:51:01Requirement already satisfied: future in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.0.0)
01:51:01Requirement already satisfied: numpy<2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.4)
01:51:01Requirement already satisfied: PyYAML in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (6.0.1)
01:51:01Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (3.6.5)
01:51:01Requirement already satisfied: portalocker in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.8.2)
01:51:01Requirement already satisfied: certifi>=2017.4.17 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (2024.2.2)
01:51:01Requirement already satisfied: charset-normalizer<4,>=2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.3.2)
01:51:01Requirement already satisfied: idna<4,>=2.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.6)
01:51:01WARNING: You are using pip version 21.2.3; however, version 24.1.1 is available.
01:51:01You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command.
01:51:02+ source docs/hudson/OMERO.sh
01:51:02++ set -e
01:51:02++ set -u
01:51:02++ set -x
01:51:02++ source docs/hudson/functions.sh
01:51:02++ echo Building merge_ci
01:51:02Building merge_ci
01:51:02++ python3 ./build.py build-dev release-all
01:51:02OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0
01:51:02Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
01:51:0301:51:03check-ivy:
01:51:03Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
01:51:03Created dir: /home/omero/workspace/OMERO-build/src/target
01:51:03:: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ ::
01:51:03:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:51:0301:51:03build-scons:
01:51:03Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
01:51:04No sub-builds to iterate on
01:51:04Entering /home/omero/workspace/OMERO-build/src/components/tools...
01:51:0401:51:04buildlist:
01:51:04:: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ ::
01:51:04:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:51:0401:51:04clean:
01:51:04Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
01:51:05Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
01:51:0501:51:05python-clean:
01:51:05WARNING: '' not a valid package name; please use only .-separated package names in setup.py
01:51:05/usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-475-99dd296a2f-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
01:51:05 warnings.warn(
01:51:05running clean
01:51:05Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
01:51:05Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
01:51:0501:51:05python-clean:
01:51:05WARNING: '' not a valid package name; please use only .-separated package names in setup.py
01:51:05/usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-475-99dd296a2f-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
01:51:05 warnings.warn(
01:51:05running clean
01:51:05Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
01:51:05Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
01:51:05Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
01:51:05Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
01:51:0601:51:06python-clean:
01:51:06WARNING: '' not a valid package name; please use only .-separated package names in setup.py
01:51:06/usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-475-99dd296a2f-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
01:51:06 warnings.warn(
01:51:06running clean
01:51:06Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
01:51:06Deleting directory /home/omero/workspace/OMERO-build/src/target
01:51:0601:51:06build-scons:
01:51:06Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
01:51:0601:51:06build:
01:51:06No sub-builds to iterate on
01:51:06Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
01:51:06Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
01:51:06Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
01:51:06Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
01:51:0601:51:06tools-init:
01:51:06no-op
01:51:0601:51:06retrieve:
01:51:06:: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ ::
01:51:06:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:51:2801:51:28prepare:
01:51:28Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
01:51:28Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
01:51:28Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
01:51:28Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
01:51:28Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
01:51:28Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
01:51:28Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
01:51:28Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
01:51:28Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
01:51:28Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
01:51:28Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
01:51:28Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
01:51:28Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
01:51:28Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
01:51:28Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
01:51:2801:51:28pre-compile:
01:51:28Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
01:51:28Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
01:51:28Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
01:51:28Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
01:51:28Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
01:51:2801:51:28compile:
01:51:28no-op
01:51:2801:51:28package:
01:51:28Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
01:51:2901:51:29install:
01:51:29:: delivering :: omero#omero_client;working@2fed98c19e20 :: 5.6.3-475-99dd296a2f-ice36 :: integration :: Mon Jul 01 01:51:06 UTC 2024
01:51:29 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
01:51:29:: publishing :: omero#omero_client
01:51:29 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-475-99dd296a2f-ice36/omero_client-5.6.3-475-99dd296a2f-ice36.jar
01:51:29 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-475-99dd296a2f-ice36/omero_client-5.6.3-475-99dd296a2f-ice36.xml
01:51:29Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
01:51:29Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
01:51:2901:51:29retrieve:
01:51:29:: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ ::
01:51:29:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:51:29Entering /home/omero/workspace/OMERO-build/src/components/tools...
01:51:2901:51:29dist:
01:51:29Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
01:51:29Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
01:51:29Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
01:51:29Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.8.3.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
01:51:29Copying 28 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
01:51:30Copying 28 files to /home/omero/workspace/OMERO-build/src/dist
01:51:30Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
01:51:30Entering /home/omero/workspace/OMERO-build/src/components/tests...
01:51:30Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
01:51:3001:51:30copy-licenses:
01:51:30Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
01:51:30Created dir: /home/omero/workspace/OMERO-build/src/dist/share
01:51:30Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
01:51:3001:51:30copy-history:
01:51:30Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
01:51:3001:51:30copy-etc:
01:51:30Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
01:51:31Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
01:51:3101:51:31copy-sql:
01:51:31Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
01:51:4601:51:46copy-server:
01:51:46 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.0.11 won
01:51:4601:51:46copy-client:
01:51:46Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
01:51:48 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.0.11 won
01:51:4801:51:48update-version:
01:51:48Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
01:51:4801:51:48create-workdirs:
01:51:48Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
01:51:48Created dir: /home/omero/workspace/OMERO-build/src/dist/var
01:51:4801:51:48copy-luts:
01:51:48Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
01:51:48Copying 39 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
01:51:4801:51:48test-compile:
01:51:48:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:51:48Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
01:51:49Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
01:51:49Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
01:51:49Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
01:51:49Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
01:51:49Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
01:51:49Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
01:51:4901:51:49testng-init:
01:51:49:: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ ::
01:51:49:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:51:5301:51:52,888 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
01:51:5301:51:52,891 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4046b407 - No custom configurators were discovered as a service.
01:51:5301:51:52,891 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4046b407 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
01:51:5301:51:52,894 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4046b407 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
01:51:5301:51:52,895 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
01:51:5301:51:52,895 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
01:51:5301:51:52,896 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4046b407 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
01:51:5301:51:52,896 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4046b407 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
01:51:5301:51:52,897 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4046b407 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
01:51:5301:51:52,898 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
01:51:5301:51:52,898 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
01:51:5301:51:52,899 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@39b266b2 - Resource [logback.xml] occurs multiple times on the classpath.
01:51:5301:51:52,899 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@39b266b2 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
01:51:5301:51:52,899 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@39b266b2 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
01:51:5301:51:53,114 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
01:51:5301:51:53,114 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
01:51:5301:51:53,134 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
01:51:5301:51:53,136 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@5ea7ad41 - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
01:51:5301:51:53,136 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@5ea7ad41 - Please move "immediateFlush" property into the enclosing appender.
01:51:5301:51:53,201 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@5ea7ad41 - Setting the "immediateFlush" property of the enclosing appender to true
01:51:5301:51:53,202 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
01:51:5301:51:53,202 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
01:51:5301:51:53,202 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
01:51:5301:51:53,202 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
01:51:5301:51:53,202 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
01:51:5301:51:53,202 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
01:51:5301:51:53,203 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@3dc70c5a - End of configuration.
01:51:5301:51:53,205 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48d46169 - Registering current configuration as safe fallback point
01:51:5301:51:53,205 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4046b407 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 308 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
01:51:5301:51:53lifecycle.test-compile:
01:51:53Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
01:51:53Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
01:51:53warning: [options] bootstrap class path not set in conjunction with -source 8
01:51:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:51:56import omero.grid.RawAccessRequest;
01:51:56 ^
01:51:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:51:56import omero.grid.RawAccessRequest;
01:51:56 ^
01:51:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:51:56import omero.grid.RawAccessRequest;
01:51:56 ^
01:51:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
01:51:56import omero.model.ImportJob;
01:51:56 ^
01:51:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
01:51:56import omero.model.ImportJobI;
01:51:56 ^
01:51:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated
01:51:57 IObject link = (IObject) linkClass.newInstance();
01:51:57 ^
01:51:57 where T is a type-variable:
01:51:57 T extends Object declared in class Class
01:51:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
01:51:58 T copy = (T) obj.getClass().newInstance();
01:51:58 ^
01:51:58 where T is a type-variable:
01:51:58 T extends Object declared in class Class
01:51:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:51:58 RawAccessRequest raw = new RawAccessRequest();
01:51:58 ^
01:51:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:51:58 RawAccessRequest raw = new RawAccessRequest();
01:51:58 ^
01:51:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
01:51:58 raw.repoUuid = legacy.root().getHash().getValue();
01:51:58 ^
01:51:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
01:51:58 raw.command = "rm";
01:51:58 ^
01:51:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
01:51:58 raw.args = Arrays.asList(path);
01:51:58 ^
01:51:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
01:51:58 final IObject link = linkClass.newInstance();
01:51:58 ^
01:51:58 where T is a type-variable:
01:51:58 T extends Object declared in class Class
01:51:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
01:51:58 originalLink.setChild(annotationClass.newInstance());
01:51:58 ^
01:51:58 where T is a type-variable:
01:51:58 T extends Object declared in class Class
01:51:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
01:51:59 RoiResult r = svc.findByImage(id, new RoiOptions());
01:51:59 ^
01:51:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:51:59 final RawAccessRequest request = new RawAccessRequest();
01:51:59 ^
01:51:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:51:59 final RawAccessRequest request = new RawAccessRequest();
01:51:59 ^
01:51:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
01:51:59 request.repoUuid = repo.root().getHash().getValue();
01:51:59 ^
01:51:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
01:51:59 request.command = "exists";
01:51:59 ^
01:51:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
01:51:59 request.args = Collections.singletonList(dirPath);
01:51:59 ^
01:51:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:51:59 final RawAccessRequest request = new RawAccessRequest();
01:51:59 ^
01:51:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:51:59 final RawAccessRequest request = new RawAccessRequest();
01:51:59 ^
01:51:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
01:51:59 request.repoUuid = repo.root().getHash().getValue();
01:51:59 ^
01:51:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
01:51:59 request.command = "exists";
01:51:59 ^
01:51:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
01:51:59 request.args = Collections.singletonList(dirName);
01:51:59 ^
01:51:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
01:51:59 final ImportJob importJob = new ImportJobI();
01:51:59 ^
01:51:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
01:51:59 final ImportJob importJob = new ImportJobI();
01:51:59 ^
01:51:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
01:51:59 importJob.setImageName(omero.rtypes.rstring(name));
01:51:59 ^
01:51:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
01:51:59 importJob.setImageDescription(omero.rtypes.rstring(desc));
01:51:59 ^
01:51:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
01:51:59 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
01:51:59 ^
01:51:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
01:51:59 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
01:51:59 ^
01:51:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
01:51:59 final String savedName = sent.getImageName().getValue().toString();
01:51:59 ^
01:51:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
01:51:59 final String savedDesc = sent.getImageDescription().getValue().toString();
01:51:59 ^
01:51:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
01:51:59 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
01:51:59 ^
01:51:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
01:51:59 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
01:51:59 ^
01:51:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
01:51:59 final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
01:51:59 ^
01:51:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
01:51:59 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
01:51:59 ^
01:52:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
01:52:00 RoiResult r = svc.findByImage(image.getId().getValue(),
01:52:00 ^
01:52:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:52:00 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
01:52:00 ^
01:52:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:52:00 l = svc.getRoiMeasurements(image.getId().getValue(), options);
01:52:00 ^
01:52:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:52:00 l = svc.getRoiMeasurements(image.getId().getValue(), options);
01:52:00 ^
01:52:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:52:00 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
01:52:00 ^
01:52:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
01:52:00 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
01:52:00 ^
01:52:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:52:00 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
01:52:00 ^
01:52:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
01:52:00 table = svc.getTable(f.getId().getValue());
01:52:00 ^
01:52:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
01:52:00 RoiResult r = svc.findByImage(image.getId().getValue(),
01:52:00 ^
01:52:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
01:52:00 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
01:52:00 ^
01:52:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
01:52:00 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
01:52:00 ^
01:52:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
01:52:00 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
01:52:00 ^
01:52:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
01:52:00 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
01:52:00 ^
01:52:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
01:52:00 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
01:52:00 ^
01:52:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
01:52:00 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
01:52:00 ^
01:52:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
01:52:00 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
01:52:00 ^
01:52:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
01:52:00 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
01:52:00 ^
01:52:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Long(long) in Long has been deprecated
01:52:00 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
01:52:00 ^
01:52:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
01:52:00 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
01:52:00 ^
01:52:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
01:52:00 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
01:52:00 ^
01:52:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
01:52:00 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
01:52:00 ^
01:52:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
01:52:00 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
01:52:00 ^
01:52:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
01:52:00 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
01:52:00 ^
01:52:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
01:52:00 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
01:52:00 ^
01:52:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
01:52:00 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
01:52:00 ^
01:52:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
01:52:00 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
01:52:00 ^
01:52:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
01:52:00 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
01:52:00 ^
01:52:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
01:52:00 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
01:52:00 ^
01:52:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
01:52:00 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
01:52:00 ^
01:52:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
01:52:00 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
01:52:00 ^
01:52:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
01:52:00 svc.getShapeStatsRestricted(
01:52:00 ^
01:52:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
01:52:00 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
01:52:00 ^
01:52:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
01:52:00 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
01:52:00 ^
01:52:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
01:52:00 request.typesToIgnore = Collections.singletonList("TagAnnotation");
01:52:00 ^
01:52:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
01:52:00 request.typesToIgnore = Collections.singletonList("IAnnotationLink");
01:52:00 ^
01:52:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
01:52:00 request.typesToIgnore = Collections.singletonList("Annotation");
01:52:00 ^
01:52:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
01:52:00 request.typesToIgnore = Collections.singletonList("Annotation");
01:52:00 ^
01:52:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
01:52:00 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
01:52:00 ^
01:52:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
01:52:00 p2.setRelatedTo(p1);
01:52:00 ^
01:52:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
01:52:00 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
01:52:00 ^
01:52:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
01:52:00 pixels1.setRelatedTo(pixels2);
01:52:00 ^
01:52:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
01:52:00 Pixels pixels = pixels1.getRelatedTo();
01:52:00 ^
01:52:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
01:52:00 Assert.assertNull(pixels1.getRelatedTo());
01:52:00 ^
01:52:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
01:52:00 pixels1.setRelatedTo(pixels2);
01:52:00 ^
01:52:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
01:52:00 Pixels pixels = pixels1.getRelatedTo();
01:52:00 ^
01:52:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
01:52:00 Assert.assertNull(pixels1.getRelatedTo());
01:52:00 ^
01:52:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:52:00 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
01:52:00 ^
01:52:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:52:00 l = svc.getRoiMeasurements(image.getId().getValue(), options);
01:52:00 ^
01:52:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:52:00 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
01:52:00 ^
01:52:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:52:00 l = svc.getRoiMeasurements(image.getId().getValue(), options);
01:52:00 ^
01:52:00Note: Some input files use unchecked or unsafe operations.
01:52:00Note: Recompile with -Xlint:unchecked for details.
01:52:0088 warnings
01:52:01Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_872924699.tmp
01:52:01Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar
01:52:01:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:52:01:: delivering :: omero#OmeroJava-test;working@2fed98c19e20 :: 5.6.3-475-99dd296a2f-ice36 :: integration :: Mon Jul 01 01:51:49 UTC 2024
01:52:01 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml
01:52:01:: publishing :: omero#OmeroJava-test
01:52:01 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-475-99dd296a2f-ice36.jar
01:52:01 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-475-99dd296a2f-ice36.xml
01:52:0101:52:01build-eclipse:
01:52:01No sub-builds to iterate on
01:52:01Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
01:52:0101:52:01retrieve:
01:52:01:: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ ::
01:52:01:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:52:0401:52:04prepare:
01:52:04Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
01:52:0501:52:05release-clients:
01:52:05Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-475-99dd296a2f-ice36.zip
01:52:1201:52:12release-zip:
01:52:12Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-475-99dd296a2f-ice36.zip
01:52:2501:52:25BUILD SUCCESSFUL
01:52:25Total time: 1 minute 22 seconds
01:52:25++ '[' -d .git ']'
01:52:25++ python3 ./build.py release-src
01:52:25OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0
01:52:25Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
01:52:2501:52:25release-src-git:
01:52:25Releasing openmicroscopy-5.6.3-475-99dd296a2f-ice36
01:52:27 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-475-99dd296a2f-ice36.zip
01:52:27 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-475-99dd296a2f-ice36-base.zip
01:52:2901:52:29BUILD SUCCESSFUL
01:52:29Total time: 3 seconds
01:52:29++ echo BUILD_NUMBER=107
01:52:29++ echo OMERO_BRANCH=merge_ci
01:52:29++ git_info
01:52:29+++ git rev-parse HEAD
01:52:29++ HEAD=99dd296a2f9aaefb0165b1ea8ae99b3f0764a271
01:52:29++ git log --max-count=1 99dd296a2f9aaefb0165b1ea8ae99b3f0764a271
01:52:29++ env
01:52:29++ sort
01:52:29Archiving artifacts
01:52:58Finished: SUCCESS
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