00:34:03Started by upstream project "Trigger" build number 13900:34:03originally caused by:
00:34:03 Started by timer
00:34:03Running as SYSTEM
00:34:03Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
00:34:03The recommended git tool is: NONE
00:34:03No credentials specified
00:34:03 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10
00:34:03Fetching changes from the remote Git repository
00:34:03 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
00:34:03Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git00:34:03 > git --version # timeout=10
00:34:03 > git --version # 'git version 2.47.3'
00:34:03 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
00:34:03 > git rev-parse origin/merge_ci^{commit} # timeout=10
00:34:03Checking out Revision 73eb307618ee750a08ed30aaed71a541d657288b (origin/merge_ci)
00:34:03 > git config core.sparsecheckout # timeout=10
00:34:03 > git checkout -f 73eb307618ee750a08ed30aaed71a541d657288b # timeout=10
00:34:03Commit message: "Add version.properties to etc/omero.properties"
00:34:03 > git rev-list --no-walk 11f94821978f565854e3848f802eb40adb2edd5f # timeout=10
00:34:03Cleaning workspace
00:34:03 > git rev-parse --verify HEAD # timeout=10
00:34:03Resetting working tree
00:34:03 > git reset --hard # timeout=10
00:34:03 > git clean -fdx # timeout=10
00:34:04Copied 6 artifacts from "OMERO-python-superbuild-build" build number 10300:34:04[OMERO-build] $ /bin/bash -xe /tmp/jenkins10258091286246759384.sh
00:34:04+ mv omero-scripts/dist/omero_scripts-5.10.1.dev0.tar.gz .
00:34:04+ cd src
00:34:04+ export OMERO_BRANCH=merge_ci
00:34:04+ OMERO_BRANCH=merge_ci
00:34:04+ OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
00:34:04+ rm -rf /home/omero/workspace/OMERO-build/omero-virtualenv
00:34:04+ source /home/omero/settings.env
00:34:04++ OMERO_DB_HOST=pg
00:34:04++ OMERO_DB_USER=postgres
00:34:04++ OMERO_DB_PASS=
00:34:04++ OMERO_ROOT_PASS=omero
00:34:04++ OMERO_DATA_DIR=/OMERO
00:34:04++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
00:34:04+ python3.11 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
00:34:07+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl00:34:08Collecting zeroc-ice==3.6.5
00:34:08 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
00:34:11 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 12.9 MB/s eta 0:00:00
00:34:11Installing collected packages: zeroc-ice
00:34:12Successfully installed zeroc-ice-3.6.5
00:34:1200:34:12[notice] A new release of pip available: 22.3.1 -> 26.0.1
00:34:12[notice] To update, run: python3.11 -m pip install --upgrade pip
00:34:12+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U 'setuptools<66' omero-py
00:34:12Requirement already satisfied: setuptools<66 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (65.5.1)
00:34:13Collecting setuptools<66
00:34:13 Using cached setuptools-65.7.0-py3-none-any.whl (1.2 MB)
00:34:13Collecting omero-py
00:34:13 Using cached omero_py-5.22.1-py3-none-any.whl (2.8 MB)
00:34:13Collecting appdirs
00:34:13 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
00:34:13Collecting future
00:34:13 Using cached future-1.0.0-py3-none-any.whl (491 kB)
00:34:13Collecting numpy<3,>=2
00:34:14 Using cached numpy-2.4.4-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB)
00:34:14Collecting Pillow>=10.0.0
00:34:14 Using cached pillow-12.2.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (7.1 MB)
00:34:14Collecting PyYAML
00:34:14 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB)
00:34:14Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (from omero-py) (3.6.5)
00:34:14Collecting requests
00:34:14 Using cached requests-2.33.1-py3-none-any.whl (64 kB)
00:34:14Collecting portalocker
00:34:14 Using cached portalocker-3.2.0-py3-none-any.whl (22 kB)
00:34:15Collecting charset_normalizer<4,>=2
00:34:15 Using cached charset_normalizer-3.4.7-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (214 kB)
00:34:15Collecting idna<4,>=2.5
00:34:15 Using cached idna-3.11-py3-none-any.whl (71 kB)
00:34:15Collecting urllib3<3,>=1.26
00:34:15 Using cached urllib3-2.6.3-py3-none-any.whl (131 kB)
00:34:15Collecting certifi>=2023.5.7
00:34:15 Using cached certifi-2026.2.25-py3-none-any.whl (153 kB)
00:34:15Installing collected packages: appdirs, urllib3, setuptools, PyYAML, portalocker, Pillow, numpy, idna, future, charset_normalizer, certifi, requests, omero-py
00:34:15 Attempting uninstall: setuptools
00:34:15 Found existing installation: setuptools 65.5.1
00:34:15 Uninstalling setuptools-65.5.1:
00:34:15 Successfully uninstalled setuptools-65.5.1
00:34:20Successfully installed Pillow-12.2.0 PyYAML-6.0.3 appdirs-1.4.4 certifi-2026.2.25 charset_normalizer-3.4.7 future-1.0.0 idna-3.11 numpy-2.4.4 omero-py-5.22.1 portalocker-3.2.0 requests-2.33.1 setuptools-65.7.0 urllib3-2.6.3
00:34:2000:34:20[notice] A new release of pip available: 22.3.1 -> 26.0.1
00:34:20[notice] To update, run: python3.11 -m pip install --upgrade pip
00:34:21+ source /home/omero/workspace/OMERO-build/omero-virtualenv/bin/activate
00:34:21++ deactivate nondestructive
00:34:21++ '[' -n '' ']'
00:34:21++ '[' -n '' ']'
00:34:21++ hash -r
00:34:21++ '[' -n '' ']'
00:34:21++ unset VIRTUAL_ENV
00:34:21++ unset VIRTUAL_ENV_PROMPT
00:34:21++ '[' '!' nondestructive = nondestructive ']'
00:34:21++ VIRTUAL_ENV=/home/omero/workspace/OMERO-build/omero-virtualenv
00:34:21++ export VIRTUAL_ENV
00:34:21++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:34:21++ PATH=/home/omero/workspace/OMERO-build/omero-virtualenv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:34:21++ export PATH
00:34:21++ '[' -n '' ']'
00:34:21++ '[' -z '' ']'
00:34:21++ _OLD_VIRTUAL_PS1=
00:34:21++ PS1='(omero-virtualenv) '
00:34:21++ export PS1
00:34:21++ VIRTUAL_ENV_PROMPT='(omero-virtualenv) '
00:34:21++ export VIRTUAL_ENV_PROMPT
00:34:21++ hash -r
00:34:21+ source docs/hudson/OMERO.sh
00:34:21++ set -e
00:34:21++ set -u
00:34:21++ set -x
00:34:21++ source docs/hudson/functions.sh
00:34:21++ echo Building merge_ci
00:34:21Building merge_ci
00:34:21++ python3 ./build.py build-dev release-all
00:34:21Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
00:34:2100:34:21check-ivy:
00:34:21Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
00:34:21Created dir: /home/omero/workspace/OMERO-build/src/target
00:34:21:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:34:21:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:34:2200:34:22build-scons:
00:34:22Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
00:34:22No sub-builds to iterate on
00:34:22Entering /home/omero/workspace/OMERO-build/src/components/tools...
00:34:2200:34:22buildlist:
00:34:22:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:34:22:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:34:2200:34:22clean:
00:34:22Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:34:22Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:34:2300:34:23python-clean:
00:34:23WARNING: '' not a valid package name; please use only .-separated package names in setup.py
00:34:23/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-594-73eb307618-ice36-b107') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
00:34:23 warnings.warn(
00:34:23running clean
00:34:23Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
00:34:23Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
00:34:2300:34:23python-clean:
00:34:23WARNING: '' not a valid package name; please use only .-separated package names in setup.py
00:34:23/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-594-73eb307618-ice36-b107') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
00:34:23 warnings.warn(
00:34:23running clean
00:34:23Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
00:34:23Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
00:34:23Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:34:23Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:34:2300:34:23python-clean:
00:34:23WARNING: '' not a valid package name; please use only .-separated package names in setup.py
00:34:23/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-594-73eb307618-ice36-b107') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
00:34:23 warnings.warn(
00:34:23running clean
00:34:23Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
00:34:23Deleting directory /home/omero/workspace/OMERO-build/src/target
00:34:2400:34:24build-scons:
00:34:24Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
00:34:2400:34:24build:
00:34:24No sub-builds to iterate on
00:34:24Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:34:24Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:34:24Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
00:34:24Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
00:34:2400:34:24tools-init:
00:34:24no-op
00:34:2400:34:24retrieve:
00:34:24:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:34:24:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:35:0800:35:08prepare:
00:35:08Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
00:35:08Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
00:35:08Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
00:35:08Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:35:08Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:35:08Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
00:35:08Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
00:35:08Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:35:08Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:35:08Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:35:08Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:35:08Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:35:08Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:35:08Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:35:08Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:35:0800:35:08pre-compile:
00:35:08Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:35:08Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:35:09Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:35:09Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:35:09Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:35:0900:35:09compile:
00:35:09no-op
00:35:0900:35:09package:
00:35:09Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
00:35:0900:35:09install:
00:35:09:: delivering :: omero#omero_client;working@012a2a74efc3 :: 5.6.3-594-73eb307618-ice36-b107 :: integration :: Sun Apr 12 00:34:24 UTC 2026
00:35:09 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
00:35:09:: publishing :: omero#omero_client
00:35:09 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-594-73eb307618-ice36-b107/omero_client-5.6.3-594-73eb307618-ice36-b107.jar
00:35:09 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-594-73eb307618-ice36-b107/omero_client-5.6.3-594-73eb307618-ice36-b107.xml
00:35:09Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:35:09Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:35:1000:35:10retrieve:
00:35:10:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:35:10:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:35:10Entering /home/omero/workspace/OMERO-build/src/components/tools...
00:35:1000:35:10dist:
00:35:10Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
00:35:10Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
00:35:10Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
00:35:10Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.10.1.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
00:35:10Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
00:35:10Copying 29 files to /home/omero/workspace/OMERO-build/src/dist
00:35:10Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
00:35:10Entering /home/omero/workspace/OMERO-build/src/components/tests...
00:35:10Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
00:35:1000:35:10copy-licenses:
00:35:10Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
00:35:10Created dir: /home/omero/workspace/OMERO-build/src/dist/share
00:35:10Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
00:35:1000:35:10copy-history:
00:35:10Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
00:35:1000:35:10copy-etc:
00:35:10Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
00:35:10Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
00:35:1000:35:10copy-sql:
00:35:10Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
00:35:1600:35:16copy-server:
00:35:16 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.1.9 won
00:35:1600:35:16copy-client:
00:35:16Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
00:35:17 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.1.9 won
00:35:1700:35:17update-version:
00:35:17Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
00:35:1700:35:17create-workdirs:
00:35:17Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
00:35:17Created dir: /home/omero/workspace/OMERO-build/src/dist/var
00:35:17Created dir: /home/omero/workspace/OMERO-build/src/dist/var/tmp
00:35:1700:35:17copy-luts:
00:35:17Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
00:35:17Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
00:35:1700:35:17test-compile:
00:35:17:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:35:18Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
00:35:18Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:35:18Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:35:18Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:35:18Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:35:18Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
00:35:18Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
00:35:1800:35:18testng-init:
00:35:18:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:35:18:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:35:2100:35:20,834 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.16
00:35:2100:35:20,836 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3109f8ae - No custom configurators were discovered as a service.
00:35:2100:35:20,836 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3109f8ae - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
00:35:2100:35:20,839 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3109f8ae - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
00:35:2100:35:20,839 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
00:35:2100:35:20,840 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
00:35:2100:35:20,840 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3109f8ae - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
00:35:2100:35:20,840 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3109f8ae - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
00:35:2100:35:20,842 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3109f8ae - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
00:35:2100:35:20,842 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
00:35:2100:35:20,842 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
00:35:2100:35:20,843 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@1818c0a0 - Resource [logback.xml] occurs multiple times on the classpath.
00:35:2100:35:20,843 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@1818c0a0 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
00:35:2100:35:20,843 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@1818c0a0 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
00:35:2100:35:21,052 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
00:35:2100:35:21,052 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
00:35:2100:35:21,070 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
00:35:2100:35:21,071 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@646a5e76 - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
00:35:2100:35:21,071 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@646a5e76 - Please move "immediateFlush" property into the enclosing appender.
00:35:2100:35:21,129 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@646a5e76 - Setting the "immediateFlush" property of the enclosing appender to true
00:35:2100:35:21,130 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
00:35:2100:35:21,130 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
00:35:2100:35:21,130 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
00:35:2100:35:21,130 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
00:35:2100:35:21,130 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
00:35:2100:35:21,130 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
00:35:2100:35:21,131 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2656db92 - End of configuration.
00:35:2100:35:21,133 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@58649b7e - Registering current configuration as safe fallback point
00:35:2100:35:21,133 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3109f8ae - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 291 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
00:35:2100:35:21lifecycle.test-compile:
00:35:21Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
00:35:21Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
00:35:21warning: [options] bootstrap class path not set in conjunction with -source 8
00:35:22/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:35:22import omero.grid.RawAccessRequest;
00:35:22 ^
00:35:22/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:35:22import omero.grid.RawAccessRequest;
00:35:22 ^
00:35:22/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:35:22import omero.grid.RawAccessRequest;
00:35:22 ^
00:35:22/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
00:35:22import omero.model.ImportJob;
00:35:22 ^
00:35:22/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
00:35:22import omero.model.ImportJobI;
00:35:22 ^
00:35:23/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated
00:35:23 IObject link = (IObject) linkClass.newInstance();
00:35:23 ^
00:35:23 where T is a type-variable:
00:35:23 T extends Object declared in class Class
00:35:23/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
00:35:23 T copy = (T) obj.getClass().newInstance();
00:35:23 ^
00:35:23 where T is a type-variable:
00:35:23 T extends Object declared in class Class
00:35:23/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:35:23 RawAccessRequest raw = new RawAccessRequest();
00:35:23 ^
00:35:23/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:35:23 RawAccessRequest raw = new RawAccessRequest();
00:35:23 ^
00:35:23/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
00:35:23 raw.repoUuid = legacy.root().getHash().getValue();
00:35:23 ^
00:35:23/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
00:35:23 raw.command = "rm";
00:35:23 ^
00:35:23/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
00:35:23 raw.args = Arrays.asList(path);
00:35:23 ^
00:35:24/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
00:35:24 final IObject link = linkClass.newInstance();
00:35:24 ^
00:35:24 where T is a type-variable:
00:35:24 T extends Object declared in class Class
00:35:24/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
00:35:24 originalLink.setChild(annotationClass.newInstance());
00:35:24 ^
00:35:24 where T is a type-variable:
00:35:24 T extends Object declared in class Class
00:35:24/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
00:35:24 RoiResult r = svc.findByImage(id, new RoiOptions());
00:35:24 ^
00:35:24/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:35:24 final RawAccessRequest request = new RawAccessRequest();
00:35:24 ^
00:35:24/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:35:24 final RawAccessRequest request = new RawAccessRequest();
00:35:24 ^
00:35:24/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
00:35:24 request.repoUuid = repo.root().getHash().getValue();
00:35:24 ^
00:35:24/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
00:35:24 request.command = "exists";
00:35:24 ^
00:35:24/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
00:35:24 request.args = Collections.singletonList(dirPath);
00:35:24 ^
00:35:24/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:35:24 final RawAccessRequest request = new RawAccessRequest();
00:35:24 ^
00:35:24/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:35:24 final RawAccessRequest request = new RawAccessRequest();
00:35:24 ^
00:35:24/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
00:35:24 request.repoUuid = repo.root().getHash().getValue();
00:35:24 ^
00:35:24/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
00:35:24 request.command = "exists";
00:35:24 ^
00:35:24/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
00:35:24 request.args = Collections.singletonList(dirName);
00:35:24 ^
00:35:24/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
00:35:24 final ImportJob importJob = new ImportJobI();
00:35:24 ^
00:35:24/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
00:35:24 final ImportJob importJob = new ImportJobI();
00:35:24 ^
00:35:24/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
00:35:24 importJob.setImageName(omero.rtypes.rstring(name));
00:35:24 ^
00:35:24/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
00:35:24 importJob.setImageDescription(omero.rtypes.rstring(desc));
00:35:24 ^
00:35:24/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
00:35:24 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
00:35:24 ^
00:35:24/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
00:35:24 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
00:35:24 ^
00:35:24/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
00:35:24 final String savedName = sent.getImageName().getValue().toString();
00:35:24 ^
00:35:24/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
00:35:24 final String savedDesc = sent.getImageDescription().getValue().toString();
00:35:24 ^
00:35:24/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
00:35:24 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
00:35:24 ^
00:35:24/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
00:35:24 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
00:35:24 ^
00:35:24/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
00:35:24 final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
00:35:24 ^
00:35:24/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
00:35:24 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
00:35:24 ^
00:35:25/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
00:35:25 RoiResult r = svc.findByImage(image.getId().getValue(),
00:35:25 ^
00:35:25/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:35:25 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:35:25 ^
00:35:25/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:35:25 l = svc.getRoiMeasurements(image.getId().getValue(), options);
00:35:25 ^
00:35:25/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:35:25 l = svc.getRoiMeasurements(image.getId().getValue(), options);
00:35:25 ^
00:35:25/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:35:25 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:35:25 ^
00:35:25/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
00:35:25 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
00:35:25 ^
00:35:25/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:35:25 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:35:25 ^
00:35:25/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
00:35:25 table = svc.getTable(f.getId().getValue());
00:35:25 ^
00:35:25/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
00:35:25 RoiResult r = svc.findByImage(image.getId().getValue(),
00:35:25 ^
00:35:25/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
00:35:25 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
00:35:25 ^
00:35:25/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
00:35:25 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
00:35:25 ^
00:35:25/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
00:35:25 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
00:35:25 ^
00:35:25/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
00:35:25 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
00:35:25 ^
00:35:25/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
00:35:25 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
00:35:25 ^
00:35:25/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
00:35:25 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
00:35:25 ^
00:35:25/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
00:35:25 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
00:35:25 ^
00:35:25/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
00:35:25 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
00:35:25 ^
00:35:25/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Long(long) in Long has been deprecated and marked for removal
00:35:25 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
00:35:25 ^
00:35:25/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
00:35:25 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
00:35:25 ^
00:35:25/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
00:35:25 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
00:35:25 ^
00:35:25/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
00:35:25 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
00:35:25 ^
00:35:25/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
00:35:25 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
00:35:25 ^
00:35:25/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
00:35:25 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
00:35:25 ^
00:35:25/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
00:35:25 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
00:35:25 ^
00:35:25/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
00:35:25 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
00:35:25 ^
00:35:25/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
00:35:25 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
00:35:25 ^
00:35:25/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
00:35:25 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
00:35:25 ^
00:35:25/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
00:35:25 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
00:35:25 ^
00:35:25/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
00:35:25 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
00:35:25 ^
00:35:25/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
00:35:25 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
00:35:25 ^
00:35:25/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
00:35:25 svc.getShapeStatsRestricted(
00:35:25 ^
00:35:25/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
00:35:25 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
00:35:25 ^
00:35:25/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:35:25 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
00:35:25 ^
00:35:25/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
00:35:25 request.typesToIgnore = Collections.singletonList("TagAnnotation");
00:35:25 ^
00:35:25/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
00:35:25 request.typesToIgnore = Collections.singletonList("IAnnotationLink");
00:35:25 ^
00:35:25/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
00:35:25 request.typesToIgnore = Collections.singletonList("Annotation");
00:35:25 ^
00:35:25/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
00:35:25 request.typesToIgnore = Collections.singletonList("Annotation");
00:35:25 ^
00:35:25/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:35:25 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
00:35:25 ^
00:35:25/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:35:25 p2.setRelatedTo(p1);
00:35:25 ^
00:35:25/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:35:25 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
00:35:25 ^
00:35:25/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:35:25 pixels1.setRelatedTo(pixels2);
00:35:25 ^
00:35:25/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:35:25 Pixels pixels = pixels1.getRelatedTo();
00:35:25 ^
00:35:25/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:35:25 Assert.assertNull(pixels1.getRelatedTo());
00:35:25 ^
00:35:25/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:35:25 pixels1.setRelatedTo(pixels2);
00:35:25 ^
00:35:25/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:35:25 Pixels pixels = pixels1.getRelatedTo();
00:35:25 ^
00:35:25/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:35:25 Assert.assertNull(pixels1.getRelatedTo());
00:35:25 ^
00:35:25/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:35:25 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:35:25 ^
00:35:25/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:35:25 l = svc.getRoiMeasurements(image.getId().getValue(), options);
00:35:25 ^
00:35:25/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:35:25 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:35:25 ^
00:35:25/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:35:25 l = svc.getRoiMeasurements(image.getId().getValue(), options);
00:35:25 ^
00:35:26Note: Some input files use unchecked or unsafe operations.
00:35:26Note: Recompile with -Xlint:unchecked for details.
00:35:2688 warnings
00:35:26Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_185272554.tmp
00:35:26Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar
00:35:26:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:35:26:: delivering :: omero#OmeroJava-test;working@012a2a74efc3 :: 5.6.3-594-73eb307618-ice36-b107 :: integration :: Sun Apr 12 00:35:18 UTC 2026
00:35:26 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml
00:35:26:: publishing :: omero#OmeroJava-test
00:35:26 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-594-73eb307618-ice36-b107.jar
00:35:26 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-594-73eb307618-ice36-b107.xml
00:35:2600:35:26build-eclipse:
00:35:26No sub-builds to iterate on
00:35:26Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
00:35:2600:35:26retrieve:
00:35:26:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:35:26:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:35:2800:35:28prepare:
00:35:28Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
00:35:2900:35:29release-clients:
00:35:29Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-594-73eb307618-ice36-b107.zip
00:35:3400:35:34release-zip:
00:35:34Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-594-73eb307618-ice36-b107.zip
00:35:4400:35:44BUILD SUCCESSFUL
00:35:44Total time: 1 minute 23 seconds
00:35:44++ '[' -d .git ']'
00:35:44++ python3 ./build.py release-src
00:35:44Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
00:35:4500:35:45release-src-git:
00:35:45Releasing openmicroscopy-5.6.3-594-73eb307618-ice36-b107
00:35:46 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-594-73eb307618-ice36-b107.zip
00:35:46 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-594-73eb307618-ice36-b107-base.zip
00:35:4700:35:47BUILD SUCCESSFUL
00:35:47Total time: 3 seconds
00:35:47++ echo BUILD_NUMBER=107
00:35:47++ echo OMERO_BRANCH=merge_ci
00:35:47++ git_info
00:35:47+++ git rev-parse HEAD
00:35:47++ HEAD=73eb307618ee750a08ed30aaed71a541d657288b
00:35:47++ git log --max-count=1 73eb307618ee750a08ed30aaed71a541d657288b
00:35:47++ env
00:35:47++ sort
00:35:47Archiving artifacts
00:36:03Finished: SUCCESS
