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11:28:46 Started by upstream project "Trigger" build number 122
11:28:46 originally caused by:
11:28:46  Started by user devspace
11:28:46 Running as SYSTEM
11:28:46 Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
11:28:46 The recommended git tool is: NONE
11:28:46 No credentials specified
11:28:46  > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10
11:28:46 Fetching changes from the remote Git repository
11:28:46  > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
11:28:46 Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git
11:28:46  > git --version # timeout=10
11:28:46  > git --version # 'git version 2.39.3'
11:28:46  > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
11:28:51  > git rev-parse origin/merge_ci^{commit} # timeout=10
11:28:51 Checking out Revision e41a3b9be501292575c092712b22f5da925ebf31 (origin/merge_ci)
11:28:51  > git config core.sparsecheckout # timeout=10
11:28:51  > git checkout -f e41a3b9be501292575c092712b22f5da925ebf31 # timeout=10
11:28:52 Commit message: "Add version.properties to etc/omero.properties"
11:28:52  > git rev-list --no-walk 99dd296a2f9aaefb0165b1ea8ae99b3f0764a271 # timeout=10
11:28:52 Cleaning workspace
11:28:52  > git rev-parse --verify HEAD # timeout=10
11:28:52 Resetting working tree
11:28:52  > git reset --hard # timeout=10
11:28:52  > git clean -fdx # timeout=10
11:28:52 Copied 6 artifacts from "OMERO-python-superbuild-build" build number 107
11:28:52 [OMERO-build] $ /bin/bash -xe /tmp/jenkins1855544478549168977.sh
11:28:52 + mv omero-scripts/dist/omero_scripts-5.8.3.dev0.tar.gz .
11:28:52 + cd src
11:28:52 + export OMERO_BRANCH=merge_ci
11:28:52 + OMERO_BRANCH=merge_ci
11:28:52 + OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
11:28:52 + source /home/omero/settings.env
11:28:52 ++ OMERO_DB_HOST=pg
11:28:52 ++ OMERO_DB_USER=postgres
11:28:52 ++ OMERO_DB_PASS=
11:28:52 ++ OMERO_ROOT_PASS=omero
11:28:52 ++ OMERO_DATA_DIR=/OMERO
11:28:52 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
11:28:52 + python3 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
11:28:56 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl
11:28:57 Collecting zeroc-ice==3.6.5
11:28:58   Downloading https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl (31.3 MB)
11:29:00 WARNING: You are using pip version 21.2.3; however, version 24.1.1 is available.
11:29:00 You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command.
11:29:00 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U setuptools omero-py
11:29:01 Requirement already satisfied: setuptools in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (70.1.1)
11:29:01 Collecting setuptools
11:29:01   Using cached setuptools-70.2.0-py3-none-any.whl (930 kB)
11:29:01 Requirement already satisfied: omero-py in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (5.19.3)
11:29:02 Requirement already satisfied: appdirs in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.4.4)
11:29:02 Requirement already satisfied: future in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.0.0)
11:29:02 Requirement already satisfied: requests in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.31.0)
11:29:02 Requirement already satisfied: portalocker in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.8.2)
11:29:02 Requirement already satisfied: Pillow>=10.0.0 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (10.2.0)
11:29:02 Requirement already satisfied: PyYAML in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (6.0.1)
11:29:02 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (3.6.5)
11:29:02 Requirement already satisfied: urllib3<2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.18)
11:29:02 Requirement already satisfied: numpy<2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.4)
11:29:02 Requirement already satisfied: certifi>=2017.4.17 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (2024.2.2)
11:29:02 Requirement already satisfied: charset-normalizer<4,>=2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.3.2)
11:29:02 Requirement already satisfied: idna<4,>=2.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.6)
11:29:02 Installing collected packages: setuptools
11:29:02   Attempting uninstall: setuptools
11:29:02     Found existing installation: setuptools 70.1.1
11:29:02     Uninstalling setuptools-70.1.1:
11:29:02       Successfully uninstalled setuptools-70.1.1
11:29:03 Successfully installed setuptools-70.2.0
11:29:03 WARNING: You are using pip version 21.2.3; however, version 24.1.1 is available.
11:29:03 You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command.
11:29:03 + source docs/hudson/OMERO.sh
11:29:03 ++ set -e
11:29:03 ++ set -u
11:29:03 ++ set -x
11:29:03 ++ source docs/hudson/functions.sh
11:29:03 ++ echo Building merge_ci
11:29:03 Building merge_ci
11:29:03 ++ python3 ./build.py build-dev release-all
11:29:03 OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0
11:29:03 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
11:29:03 
11:29:03 check-ivy:
11:29:03 Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
11:29:03 Created dir: /home/omero/workspace/OMERO-build/src/target
11:29:04 :: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ ::
11:29:04 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
11:29:05 
11:29:05 build-scons:
11:29:05 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
11:29:05 No sub-builds to iterate on
11:29:05 Entering /home/omero/workspace/OMERO-build/src/components/tools...
11:29:05 
11:29:05 buildlist:
11:29:05 :: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ ::
11:29:05 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
11:29:05 
11:29:05 clean:
11:29:05 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
11:29:05 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
11:29:06 
11:29:06 python-clean:
11:29:06 WARNING: '' not a valid package name; please use only .-separated package names in setup.py
11:29:06 /usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-475-e41a3b9be5-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
11:29:06   warnings.warn(
11:29:06 running clean
11:29:06 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
11:29:06 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
11:29:06 
11:29:06 python-clean:
11:29:06 WARNING: '' not a valid package name; please use only .-separated package names in setup.py
11:29:06 /usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-475-e41a3b9be5-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
11:29:06   warnings.warn(
11:29:06 running clean
11:29:06 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
11:29:06 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
11:29:06 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
11:29:06 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
11:29:06 
11:29:06 python-clean:
11:29:06 WARNING: '' not a valid package name; please use only .-separated package names in setup.py
11:29:06 /usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-475-e41a3b9be5-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
11:29:06   warnings.warn(
11:29:06 running clean
11:29:06 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
11:29:06 Deleting directory /home/omero/workspace/OMERO-build/src/target
11:29:06 
11:29:06 build-scons:
11:29:06 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
11:29:06 
11:29:06 build:
11:29:06 No sub-builds to iterate on
11:29:06 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
11:29:06 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
11:29:06 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
11:29:06 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
11:29:06 
11:29:06 tools-init:
11:29:06 no-op
11:29:07 
11:29:07 retrieve:
11:29:07 :: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ ::
11:29:07 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
11:29:57 
11:29:57 prepare:
11:29:57 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
11:29:57 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
11:29:57 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
11:29:57 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
11:29:57 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
11:29:57 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
11:29:57 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
11:29:57 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
11:29:57 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
11:29:57 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
11:29:57 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
11:29:57 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
11:29:57 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
11:29:57 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
11:29:57 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
11:29:57 
11:29:57 pre-compile:
11:29:57 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
11:29:57 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
11:29:57 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
11:29:57 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
11:29:58 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
11:29:58 
11:29:58 compile:
11:29:58 no-op
11:29:58 
11:29:58 package:
11:29:58 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
11:29:58 
11:29:58 install:
11:29:58 :: delivering :: omero#omero_client;working@2fed98c19e20 :: 5.6.3-475-e41a3b9be5-ice36 :: integration :: Tue Jul 02 11:29:06 UTC 2024
11:29:58 	delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
11:29:58 :: publishing :: omero#omero_client
11:29:58 	published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-475-e41a3b9be5-ice36/omero_client-5.6.3-475-e41a3b9be5-ice36.jar
11:29:58 	published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-475-e41a3b9be5-ice36/omero_client-5.6.3-475-e41a3b9be5-ice36.xml
11:29:58 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
11:29:58 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
11:29:59 
11:29:59 retrieve:
11:29:59 :: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ ::
11:29:59 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
11:29:59 Entering /home/omero/workspace/OMERO-build/src/components/tools...
11:29:59 
11:29:59 dist:
11:29:59 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
11:29:59 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
11:29:59 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
11:29:59 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.8.3.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
11:29:59 Copying 28 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
11:29:59 Copying 28 files to /home/omero/workspace/OMERO-build/src/dist
11:29:59 Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
11:29:59 Entering /home/omero/workspace/OMERO-build/src/components/tests...
11:29:59 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
11:29:59 
11:29:59 copy-licenses:
11:29:59 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
11:29:59 Created dir: /home/omero/workspace/OMERO-build/src/dist/share
11:29:59 Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
11:29:59 
11:29:59 copy-history:
11:29:59 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
11:29:59 
11:29:59 copy-etc:
11:29:59 Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
11:29:59 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
11:29:59 
11:29:59 copy-sql:
11:29:59 Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
11:30:14 
11:30:14 copy-server:
11:30:14 	conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.0.11 won
11:30:14 
11:30:14 copy-client:
11:30:14 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
11:30:15 	conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.0.11 won
11:30:16 
11:30:16 update-version:
11:30:16 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
11:30:16 
11:30:16 create-workdirs:
11:30:16 Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
11:30:16 Created dir: /home/omero/workspace/OMERO-build/src/dist/var
11:30:16 
11:30:16 copy-luts:
11:30:16 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
11:30:16 Copying 39 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
11:30:16 
11:30:16 test-compile:
11:30:16 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
11:30:16 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
11:30:16 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
11:30:16 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
11:30:16 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
11:30:16 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
11:30:16 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
11:30:16 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
11:30:16 
11:30:16 testng-init:
11:30:16 :: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ ::
11:30:16 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
11:30:20 11:30:19,963 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
11:30:20 11:30:19,966 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7cc89f6 - No custom configurators were discovered as a service.
11:30:20 11:30:19,966 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7cc89f6 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
11:30:20 11:30:19,971 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7cc89f6 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
11:30:20 11:30:19,972 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
11:30:20 11:30:19,972 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
11:30:20 11:30:19,973 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7cc89f6 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
11:30:20 11:30:19,973 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7cc89f6 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
11:30:20 11:30:19,975 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7cc89f6 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
11:30:20 11:30:19,975 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
11:30:20 11:30:19,976 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
11:30:20 11:30:19,977 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@4046b407 - Resource [logback.xml] occurs multiple times on the classpath.
11:30:20 11:30:19,977 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@4046b407 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
11:30:20 11:30:19,977 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@4046b407 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
11:30:20 11:30:20,207 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
11:30:20 11:30:20,207 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
11:30:20 11:30:20,228 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
11:30:20 11:30:20,230 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@39b266b2 - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
11:30:20 11:30:20,230 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@39b266b2 - Please move "immediateFlush" property into the enclosing appender.
11:30:20 11:30:20,297 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@39b266b2 - Setting the "immediateFlush" property of the enclosing appender to true
11:30:20 11:30:20,299 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
11:30:20 11:30:20,299 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
11:30:20 11:30:20,299 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
11:30:20 11:30:20,299 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
11:30:20 11:30:20,299 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
11:30:20 11:30:20,299 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
11:30:20 11:30:20,300 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5ea7ad41 - End of configuration.
11:30:20 11:30:20,302 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@3dc70c5a - Registering current configuration as safe fallback point
11:30:20 11:30:20,302 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7cc89f6 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 327 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
11:30:20 
11:30:20 lifecycle.test-compile:
11:30:20 Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
11:30:20 Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
11:30:20 warning: [options] bootstrap class path not set in conjunction with -source 8
11:30:22 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
11:30:22 import omero.grid.RawAccessRequest;
11:30:22                  ^
11:30:23 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
11:30:23 import omero.grid.RawAccessRequest;
11:30:23                  ^
11:30:23 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
11:30:23 import omero.grid.RawAccessRequest;
11:30:23                  ^
11:30:23 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
11:30:23 import omero.model.ImportJob;
11:30:23                   ^
11:30:23 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
11:30:23 import omero.model.ImportJobI;
11:30:23                   ^
11:30:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated
11:30:24         IObject link = (IObject) linkClass.newInstance();
11:30:24                                           ^
11:30:24   where T is a type-variable:
11:30:24     T extends Object declared in class Class
11:30:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
11:30:24         T copy = (T) obj.getClass().newInstance();
11:30:24                                    ^
11:30:24   where T is a type-variable:
11:30:24     T extends Object declared in class Class
11:30:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
11:30:24         RawAccessRequest raw = new RawAccessRequest();
11:30:24         ^
11:30:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
11:30:24         RawAccessRequest raw = new RawAccessRequest();
11:30:24                                    ^
11:30:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
11:30:24         raw.repoUuid = legacy.root().getHash().getValue();
11:30:24            ^
11:30:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
11:30:24         raw.command = "rm";
11:30:24            ^
11:30:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
11:30:24         raw.args = Arrays.asList(path);
11:30:24            ^
11:30:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
11:30:25         final IObject link = linkClass.newInstance();
11:30:25                                       ^
11:30:25   where T is a type-variable:
11:30:25     T extends Object declared in class Class
11:30:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
11:30:25             originalLink.setChild(annotationClass.newInstance());
11:30:25                                                  ^
11:30:25   where T is a type-variable:
11:30:25     T extends Object declared in class Class
11:30:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
11:30:25         RoiResult r = svc.findByImage(id, new RoiOptions());
11:30:25                          ^
11:30:26 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
11:30:26         final RawAccessRequest request = new RawAccessRequest();
11:30:26               ^
11:30:26 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
11:30:26         final RawAccessRequest request = new RawAccessRequest();
11:30:26                                              ^
11:30:26 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
11:30:26         request.repoUuid = repo.root().getHash().getValue();
11:30:26                ^
11:30:26 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
11:30:26         request.command = "exists";
11:30:26                ^
11:30:26 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
11:30:26         request.args = Collections.singletonList(dirPath);
11:30:26                ^
11:30:26 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
11:30:26         final RawAccessRequest request = new RawAccessRequest();
11:30:26               ^
11:30:26 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
11:30:26         final RawAccessRequest request = new RawAccessRequest();
11:30:26                                              ^
11:30:26 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
11:30:26         request.repoUuid = repo.root().getHash().getValue();
11:30:26                ^
11:30:26 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
11:30:26         request.command = "exists";
11:30:26                ^
11:30:26 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
11:30:26         request.args = Collections.singletonList(dirName);
11:30:26                ^
11:30:26 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
11:30:26         final ImportJob importJob = new ImportJobI();
11:30:26               ^
11:30:26 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
11:30:26         final ImportJob importJob = new ImportJobI();
11:30:26                                         ^
11:30:26 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
11:30:26         importJob.setImageName(omero.rtypes.rstring(name));
11:30:26                  ^
11:30:26 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
11:30:26         importJob.setImageDescription(omero.rtypes.rstring(desc));
11:30:26                  ^
11:30:26 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
11:30:26         ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
11:30:26         ^
11:30:26 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
11:30:26         ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
11:30:26                           ^
11:30:26 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
11:30:26         final String savedName = sent.getImageName().getValue().toString();
11:30:26                                      ^
11:30:26 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
11:30:26         final String savedDesc = sent.getImageDescription().getValue().toString();
11:30:26                                      ^
11:30:26 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
11:30:26         final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
11:30:26               ^
11:30:26 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
11:30:26         final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
11:30:26                                               ^
11:30:26 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
11:30:26         final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
11:30:26                                                        ^
11:30:26 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
11:30:26         final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
11:30:26                                                        ^
11:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
11:30:27         RoiResult r = svc.findByImage(image.getId().getValue(),
11:30:27                          ^
11:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
11:30:27         List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
11:30:27                                 ^
11:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
11:30:27         l = svc.getRoiMeasurements(image.getId().getValue(), options);
11:30:27                ^
11:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
11:30:27         l = svc.getRoiMeasurements(image.getId().getValue(), options);
11:30:27                ^
11:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
11:30:27         List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
11:30:27                                 ^
11:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
11:30:27         Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
11:30:27                                          ^
11:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
11:30:27         List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
11:30:27                                 ^
11:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
11:30:27         table = svc.getTable(f.getId().getValue());
11:30:27                    ^
11:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
11:30:27         RoiResult r = svc.findByImage(image.getId().getValue(),
11:30:27                          ^
11:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
11:30:27         r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
11:30:27                ^
11:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
11:30:27         r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
11:30:27                ^
11:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
11:30:27         r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
11:30:27                ^
11:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
11:30:27         r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
11:30:27                ^
11:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
11:30:27             null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
11:30:27                   ^
11:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
11:30:27             null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
11:30:27                                   ^
11:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
11:30:27             new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
11:30:27                                    ^
11:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
11:30:27             new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
11:30:27                                                    ^
11:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Long(long) in Long has been deprecated
11:30:27             Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
11:30:27                                       ^
11:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
11:30:27             Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
11:30:27                                                        ^
11:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
11:30:27             Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
11:30:27                                                                        ^
11:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
11:30:27         inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
11:30:27                                        ^
11:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
11:30:27         inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
11:30:27                                                         ^
11:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
11:30:27         inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
11:30:27                                        ^
11:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
11:30:27         inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
11:30:27                                                        ^
11:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
11:30:27         inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
11:30:27                                        ^
11:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
11:30:27         inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
11:30:27                                                        ^
11:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
11:30:27         inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
11:30:27                                        ^
11:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
11:30:27         inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
11:30:27                                                        ^
11:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
11:30:27         inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
11:30:27                                        ^
11:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
11:30:27         inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
11:30:27                                                        ^
11:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
11:30:27                 svc.getShapeStatsRestricted(
11:30:27                    ^
11:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
11:30:27         final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
11:30:27                                        ^
11:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
11:30:27         projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
11:30:27                                      ^
11:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
11:30:27         request.typesToIgnore = Collections.singletonList("TagAnnotation");
11:30:27                ^
11:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
11:30:27         request.typesToIgnore = Collections.singletonList("IAnnotationLink");
11:30:27                ^
11:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
11:30:27         request.typesToIgnore = Collections.singletonList("Annotation");
11:30:27                ^
11:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
11:30:27                     request.typesToIgnore = Collections.singletonList("Annotation");
11:30:27                            ^
11:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
11:30:27         projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
11:30:27                                      ^
11:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
11:30:27         p2.setRelatedTo(p1);
11:30:27           ^
11:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
11:30:27         Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
11:30:27                                           ^
11:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
11:30:27         pixels1.setRelatedTo(pixels2);
11:30:27                ^
11:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
11:30:27         Pixels pixels = pixels1.getRelatedTo();
11:30:27                                ^
11:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
11:30:27         Assert.assertNull(pixels1.getRelatedTo());
11:30:27                                  ^
11:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
11:30:27         pixels1.setRelatedTo(pixels2);
11:30:27                ^
11:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
11:30:27         Pixels pixels = pixels1.getRelatedTo();
11:30:27                                ^
11:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
11:30:27         Assert.assertNull(pixels1.getRelatedTo());
11:30:27                                  ^
11:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
11:30:27         List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
11:30:27                                 ^
11:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
11:30:27         l = svc.getRoiMeasurements(image.getId().getValue(), options);
11:30:27                ^
11:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
11:30:27         List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
11:30:27                                 ^
11:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
11:30:27         l = svc.getRoiMeasurements(image.getId().getValue(), options);
11:30:27                ^
11:30:27 Note: Some input files use unchecked or unsafe operations.
11:30:27 Note: Recompile with -Xlint:unchecked for details.
11:30:27 88 warnings
11:30:27 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_658857995.tmp
11:30:27 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar
11:30:27 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
11:30:27 :: delivering :: omero#OmeroJava-test;working@2fed98c19e20 :: 5.6.3-475-e41a3b9be5-ice36 :: integration :: Tue Jul 02 11:30:16 UTC 2024
11:30:27 	delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml
11:30:27 :: publishing :: omero#OmeroJava-test
11:30:27 	published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-475-e41a3b9be5-ice36.jar
11:30:27 	published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-475-e41a3b9be5-ice36.xml
11:30:27 
11:30:27 build-eclipse:
11:30:27 No sub-builds to iterate on
11:30:27 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
11:30:28 
11:30:28 retrieve:
11:30:28 :: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ ::
11:30:28 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
11:30:30 
11:30:30 prepare:
11:30:30 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
11:30:32 
11:30:32 release-clients:
11:30:32 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-475-e41a3b9be5-ice36.zip
11:30:39 
11:30:39 release-zip:
11:30:39 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-475-e41a3b9be5-ice36.zip
11:30:52 
11:30:52 BUILD SUCCESSFUL
11:30:52 Total time: 1 minute 48 seconds
11:30:52 ++ '[' -d .git ']'
11:30:52 ++ python3 ./build.py release-src
11:30:52 OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0
11:30:52 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
11:30:53 
11:30:53 release-src-git:
11:30:53 Releasing openmicroscopy-5.6.3-475-e41a3b9be5-ice36
11:30:54   - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-475-e41a3b9be5-ice36.zip
11:30:54   - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-475-e41a3b9be5-ice36-base.zip
11:30:56 
11:30:56 BUILD SUCCESSFUL
11:30:56 Total time: 4 seconds
11:30:56 ++ echo BUILD_NUMBER=108
11:30:56 ++ echo OMERO_BRANCH=merge_ci
11:30:56 ++ git_info
11:30:56 +++ git rev-parse HEAD
11:30:56 ++ HEAD=e41a3b9be501292575c092712b22f5da925ebf31
11:30:56 ++ git log --max-count=1 e41a3b9be501292575c092712b22f5da925ebf31
11:30:56 ++ env
11:30:56 ++ sort
11:30:56 Archiving artifacts
11:31:28 Finished: SUCCESS