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08:13:54 Started by upstream project "Trigger" build number 129
08:13:54 originally caused by:
08:13:54  Started by user devspace
08:13:54 Running as SYSTEM
08:13:54 Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
08:13:54 The recommended git tool is: NONE
08:13:54 No credentials specified
08:13:54  > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10
08:13:54 Fetching changes from the remote Git repository
08:13:54  > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
08:13:54 Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git
08:13:54  > git --version # timeout=10
08:13:54  > git --version # 'git version 2.52.0'
08:13:54  > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
08:14:02  > git rev-parse origin/merge_ci^{commit} # timeout=10
08:14:02 Checking out Revision 547cc34433c9ab76e1a43d5af420723c326789c3 (origin/merge_ci)
08:14:02  > git config core.sparsecheckout # timeout=10
08:14:02  > git checkout -f 547cc34433c9ab76e1a43d5af420723c326789c3 # timeout=10
08:14:22 Commit message: "Add version.properties to etc/omero.properties"
08:14:22  > git rev-list --no-walk 4bda1c1e74e27de81c06792f9f6aed49c9eba3b7 # timeout=10
08:14:22 Cleaning workspace
08:14:22  > git rev-parse --verify HEAD # timeout=10
08:14:22 Resetting working tree
08:14:22  > git reset --hard # timeout=10
08:14:23  > git clean -fdx # timeout=10
08:15:12 Copied 6 artifacts from "OMERO-python-superbuild-build" build number 99
08:15:13 [OMERO-build] $ /bin/bash -xe /tmp/jenkins5620523185679035427.sh
08:15:13 + mv omero-scripts/dist/omero_scripts-5.10.1.dev0.tar.gz .
08:15:13 + cd src
08:15:13 + export OMERO_BRANCH=merge_ci
08:15:13 + OMERO_BRANCH=merge_ci
08:15:13 + OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
08:15:13 + rm -rf /home/omero/workspace/OMERO-build/omero-virtualenv
08:15:53 + source /home/omero/settings.env
08:15:53 ++ OMERO_DB_HOST=pg
08:15:53 ++ OMERO_DB_USER=postgres
08:15:53 ++ OMERO_DB_PASS=
08:15:53 ++ OMERO_ROOT_PASS=omero
08:15:53 ++ OMERO_DATA_DIR=/OMERO
08:15:53 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
08:15:53 + python3.11 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
08:16:15 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl
08:16:17 Collecting zeroc-ice==3.6.5
08:16:17   Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
08:16:19      ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 13.1 MB/s eta 0:00:00
08:16:20 Installing collected packages: zeroc-ice
08:16:23 Successfully installed zeroc-ice-3.6.5
08:16:23 
08:16:23 [notice] A new release of pip available: 22.3.1 -> 26.2.1
08:16:23 [notice] To update, run: python3.11 -m pip install --upgrade pip
08:16:23 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U 'setuptools<66' omero-py
08:16:25 Requirement already satisfied: setuptools<66 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (65.5.1)
08:16:25 Collecting setuptools<66
08:16:25   Using cached setuptools-65.7.0-py3-none-any.whl (1.2 MB)
08:16:25 Collecting omero-py
08:16:25   Using cached omero_py-5.23.0-py3-none-any.whl (2.8 MB)
08:16:25 Collecting appdirs
08:16:25   Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
08:16:25 Collecting future
08:16:26   Using cached future-1.0.0-py3-none-any.whl (491 kB)
08:16:26 Collecting numpy<3,>=2
08:16:26   Using cached numpy-2.4.6-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB)
08:16:27 Collecting Pillow>=10.0.0
08:16:27   Using cached pillow-12.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (6.9 MB)
08:16:27 Collecting PyYAML
08:16:27   Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB)
08:16:27 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (from omero-py) (3.6.5)
08:16:27 Collecting requests
08:16:27   Using cached requests-2.34.2-py3-none-any.whl (73 kB)
08:16:28 Collecting portalocker
08:16:28   Using cached portalocker-4.4.0-py3-none-any.whl (129 kB)
08:16:28 Collecting charset_normalizer<4,>=2
08:16:28   Using cached charset_normalizer-3.5.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (269 kB)
08:16:28 Collecting idna<4,>=2.5
08:16:28   Using cached idna-3.20-py3-none-any.whl (69 kB)
08:16:28 Collecting urllib3<3,>=1.26
08:16:28   Using cached urllib3-2.8.0-py3-none-any.whl (135 kB)
08:16:29 Collecting certifi>=2023.5.7
08:16:29   Using cached certifi-2026.7.22-py3-none-any.whl (136 kB)
08:16:29 Installing collected packages: appdirs, urllib3, setuptools, PyYAML, portalocker, Pillow, numpy, idna, future, charset_normalizer, certifi, requests, omero-py
08:16:30   Attempting uninstall: setuptools
08:16:30     Found existing installation: setuptools 65.5.1
08:16:31     Uninstalling setuptools-65.5.1:
08:16:31       Successfully uninstalled setuptools-65.5.1
08:17:29 Successfully installed Pillow-12.3.0 PyYAML-6.0.3 appdirs-1.4.4 certifi-2026.7.22 charset_normalizer-3.5.2 future-1.0.0 idna-3.20 numpy-2.4.6 omero-py-5.23.0 portalocker-4.4.0 requests-2.34.2 setuptools-65.7.0 urllib3-2.8.0
08:17:29 
08:17:29 [notice] A new release of pip available: 22.3.1 -> 26.2.1
08:17:29 [notice] To update, run: python3.11 -m pip install --upgrade pip
08:17:29 + source /home/omero/workspace/OMERO-build/omero-virtualenv/bin/activate
08:17:29 ++ deactivate nondestructive
08:17:29 ++ '[' -n '' ']'
08:17:29 ++ '[' -n '' ']'
08:17:29 ++ hash -r
08:17:29 ++ '[' -n '' ']'
08:17:29 ++ unset VIRTUAL_ENV
08:17:29 ++ unset VIRTUAL_ENV_PROMPT
08:17:29 ++ '[' '!' nondestructive = nondestructive ']'
08:17:29 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-build/omero-virtualenv
08:17:29 ++ export VIRTUAL_ENV
08:17:29 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
08:17:29 ++ PATH=/home/omero/workspace/OMERO-build/omero-virtualenv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
08:17:29 ++ export PATH
08:17:29 ++ '[' -n '' ']'
08:17:29 ++ '[' -z '' ']'
08:17:29 ++ _OLD_VIRTUAL_PS1=
08:17:29 ++ PS1='(omero-virtualenv) '
08:17:29 ++ export PS1
08:17:29 ++ VIRTUAL_ENV_PROMPT='(omero-virtualenv) '
08:17:29 ++ export VIRTUAL_ENV_PROMPT
08:17:29 ++ hash -r
08:17:29 + source docs/hudson/OMERO.sh
08:17:29 ++ set -e
08:17:29 ++ set -u
08:17:29 ++ set -x
08:17:29 ++ source docs/hudson/functions.sh
08:17:29 ++ echo Building merge_ci
08:17:29 Building merge_ci
08:17:29 ++ python3 ./build.py build-dev release-all
08:17:29 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
08:17:31 
08:17:31 check-ivy:
08:17:31 Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
08:17:31 Created dir: /home/omero/workspace/OMERO-build/src/target
08:17:31 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
08:17:31 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
08:17:33 
08:17:33 build-scons:
08:17:33 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
08:17:34 No sub-builds to iterate on
08:17:35 Entering /home/omero/workspace/OMERO-build/src/components/tools...
08:17:35 
08:17:35 buildlist:
08:17:35 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
08:17:35 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
08:17:36 
08:17:36 clean:
08:17:36 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
08:17:36 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
08:17:37 
08:17:37 python-clean:
08:17:37 WARNING: '' not a valid package name; please use only .-separated package names in setup.py
08:17:37 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-689-547cc34433-ice36-b109') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
08:17:37   warnings.warn(
08:17:37 running clean
08:17:37 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
08:17:37 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
08:17:38 
08:17:38 python-clean:
08:17:38 WARNING: '' not a valid package name; please use only .-separated package names in setup.py
08:17:38 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-689-547cc34433-ice36-b109') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
08:17:38   warnings.warn(
08:17:38 running clean
08:17:38 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
08:17:39 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
08:17:39 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
08:17:39 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
08:17:40 
08:17:40 python-clean:
08:17:40 WARNING: '' not a valid package name; please use only .-separated package names in setup.py
08:17:40 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-689-547cc34433-ice36-b109') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
08:17:40   warnings.warn(
08:17:40 running clean
08:17:40 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
08:17:40 Deleting directory /home/omero/workspace/OMERO-build/src/target
08:17:41 
08:17:41 build-scons:
08:17:41 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
08:17:43 
08:17:43 build:
08:17:43 No sub-builds to iterate on
08:17:43 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
08:17:44 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
08:17:45 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
08:17:46 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
08:17:46 
08:17:46 tools-init:
08:17:46 no-op
08:17:46 
08:17:46 retrieve:
08:17:46 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
08:17:46 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
08:20:05 
08:20:05 prepare:
08:20:05 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
08:20:05 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
08:20:05 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
08:20:05 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
08:20:05 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
08:20:05 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
08:20:05 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
08:20:05 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
08:20:05 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
08:20:05 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
08:20:05 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
08:20:05 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
08:20:05 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
08:20:05 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
08:20:05 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
08:20:05 
08:20:05 pre-compile:
08:20:05 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
08:20:06 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
08:20:15 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
08:20:20 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
08:20:21 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
08:20:23 
08:20:23 compile:
08:20:23 no-op
08:20:23 
08:20:23 package:
08:20:23 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
08:20:28 
08:20:28 install:
08:20:28 :: delivering :: omero#omero_client;working@5ffef7c1fdfa :: 5.6.3-689-547cc34433-ice36-b109 :: integration :: Wed Oct 14 08:17:45 UTC 2026
08:20:28 	delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
08:20:28 :: publishing :: omero#omero_client
08:20:28 	published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-689-547cc34433-ice36-b109/omero_client-5.6.3-689-547cc34433-ice36-b109.jar
08:20:28 	published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-689-547cc34433-ice36-b109/omero_client-5.6.3-689-547cc34433-ice36-b109.xml
08:20:29 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
08:20:29 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
08:20:29 
08:20:29 retrieve:
08:20:29 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
08:20:29 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
08:20:30 Entering /home/omero/workspace/OMERO-build/src/components/tools...
08:20:30 
08:20:30 dist:
08:20:30 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
08:20:30 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
08:20:30 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
08:20:30 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.10.1.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
08:20:31 Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
08:20:31 Copying 29 files to /home/omero/workspace/OMERO-build/src/dist
08:20:32 Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
08:20:32 Entering /home/omero/workspace/OMERO-build/src/components/tests...
08:20:33 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
08:20:34 
08:20:34 copy-licenses:
08:20:34 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
08:20:34 Created dir: /home/omero/workspace/OMERO-build/src/dist/share
08:20:34 Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
08:20:35 
08:20:35 copy-history:
08:20:35 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
08:20:35 
08:20:35 copy-etc:
08:20:35 Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
08:20:35 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
08:20:36 
08:20:36 copy-sql:
08:20:36 Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
08:21:10 
08:21:10 copy-server:
08:21:10 	conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.1.9 won
08:21:10 	conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/annotations.jar in [server]: 2.34.6 won
08:21:17 
08:21:17 copy-client:
08:21:17 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
08:21:24 	conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.1.9 won
08:21:24 	conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/annotations.jar in [client]: 2.34.6 won
08:21:30 
08:21:30 update-version:
08:21:30 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
08:21:30 
08:21:30 create-workdirs:
08:21:30 Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
08:21:30 Created dir: /home/omero/workspace/OMERO-build/src/dist/var
08:21:30 Created dir: /home/omero/workspace/OMERO-build/src/dist/var/tmp
08:21:30 
08:21:30 copy-luts:
08:21:30 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
08:21:30 Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
08:21:30 
08:21:30 test-compile:
08:21:30 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
08:21:31 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
08:21:32 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
08:21:32 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
08:21:32 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
08:21:33 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
08:21:33 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
08:21:34 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
08:21:34 
08:21:34 testng-init:
08:21:34 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
08:21:34 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
08:21:46 08:21:46,605 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.16
08:21:46 08:21:46,607 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7fdbba5d - No custom configurators were discovered as a service.
08:21:46 08:21:46,607 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7fdbba5d - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
08:21:46 08:21:46,611 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7fdbba5d - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
08:21:46 08:21:46,617 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
08:21:46 08:21:46,621 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
08:21:46 08:21:46,622 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7fdbba5d - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 11 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
08:21:46 08:21:46,622 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7fdbba5d - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
08:21:46 08:21:46,624 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7fdbba5d - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
08:21:46 08:21:46,629 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
08:21:46 08:21:46,631 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
08:21:46 08:21:46,634 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@6ff36ec8 - Resource [logback.xml] occurs multiple times on the classpath.
08:21:46 08:21:46,634 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@6ff36ec8 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
08:21:46 08:21:46,634 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@6ff36ec8 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
08:21:46 08:21:46,875 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
08:21:46 08:21:46,875 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
08:21:46 08:21:46,896 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
08:21:46 08:21:46,898 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@548666b9 - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
08:21:46 08:21:46,898 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@548666b9 - Please move "immediateFlush" property into the enclosing appender.
08:21:46 08:21:46,962 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@548666b9 - Setting the "immediateFlush" property of the enclosing appender to true
08:21:46 08:21:46,963 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
08:21:46 08:21:46,963 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
08:21:46 08:21:46,963 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
08:21:46 08:21:46,963 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
08:21:46 08:21:46,963 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
08:21:46 08:21:46,963 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
08:21:46 08:21:46,964 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@12949ce - End of configuration.
08:21:46 08:21:46,966 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@238212e4 - Registering current configuration as safe fallback point
08:21:46 08:21:46,966 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7fdbba5d - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 342 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
08:21:46 
08:21:46 lifecycle.test-compile:
08:21:46 Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
08:21:47 Compiling 86 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
08:21:47 warning: [options] bootstrap class path not set in conjunction with -source 8
08:21:47 warning: [options] source value 8 is obsolete and will be removed in a future release
08:21:47 warning: [options] target value 8 is obsolete and will be removed in a future release
08:21:47 warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
08:21:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
08:21:49 import omero.grid.RawAccessRequest;
08:21:49                  ^
08:21:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
08:21:50 import omero.grid.RawAccessRequest;
08:21:50                  ^
08:21:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
08:21:50 import omero.grid.RawAccessRequest;
08:21:50                  ^
08:21:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
08:21:50 import omero.model.ImportJob;
08:21:50                   ^
08:21:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
08:21:50 import omero.model.ImportJobI;
08:21:50                   ^
08:21:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1207: warning: [deprecation] newInstance() in Class has been deprecated
08:21:51         IObject link = (IObject) linkClass.newInstance();
08:21:51                                           ^
08:21:51   where T is a type-variable:
08:21:51     T extends Object declared in class Class
08:21:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
08:21:51         T copy = (T) obj.getClass().newInstance();
08:21:51                                    ^
08:21:51   where T is a type-variable:
08:21:51     T extends Object declared in class Class
08:21:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
08:21:51         RawAccessRequest raw = new RawAccessRequest();
08:21:51         ^
08:21:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
08:21:51         RawAccessRequest raw = new RawAccessRequest();
08:21:51                                    ^
08:21:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
08:21:51         raw.repoUuid = legacy.root().getHash().getValue();
08:21:51            ^
08:21:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
08:21:51         raw.command = "rm";
08:21:51            ^
08:21:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
08:21:51         raw.args = Arrays.asList(path);
08:21:51            ^
08:21:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
08:21:51         final IObject link = linkClass.newInstance();
08:21:51                                       ^
08:21:51   where T is a type-variable:
08:21:51     T extends Object declared in class Class
08:21:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
08:21:52             originalLink.setChild(annotationClass.newInstance());
08:21:52                                                  ^
08:21:52   where T is a type-variable:
08:21:52     T extends Object declared in class Class
08:21:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
08:21:52         RoiResult r = svc.findByImage(id, new RoiOptions());
08:21:52                          ^
08:21:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
08:21:53         final RawAccessRequest request = new RawAccessRequest();
08:21:53               ^
08:21:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
08:21:53         final RawAccessRequest request = new RawAccessRequest();
08:21:53                                              ^
08:21:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
08:21:53         request.repoUuid = repo.root().getHash().getValue();
08:21:53                ^
08:21:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
08:21:53         request.command = "exists";
08:21:53                ^
08:21:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
08:21:53         request.args = Collections.singletonList(dirPath);
08:21:53                ^
08:21:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
08:21:53         final RawAccessRequest request = new RawAccessRequest();
08:21:53               ^
08:21:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
08:21:53         final RawAccessRequest request = new RawAccessRequest();
08:21:53                                              ^
08:21:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
08:21:53         request.repoUuid = repo.root().getHash().getValue();
08:21:53                ^
08:21:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
08:21:53         request.command = "exists";
08:21:53                ^
08:21:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
08:21:53         request.args = Collections.singletonList(dirName);
08:21:53                ^
08:21:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactoryTest.java:60: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
08:21:53             RoiResult result = roiSvc.findByImage(imageId, new RoiOptions());
08:21:53                                      ^
08:21:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
08:21:53         final ImportJob importJob = new ImportJobI();
08:21:53               ^
08:21:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
08:21:53         final ImportJob importJob = new ImportJobI();
08:21:53                                         ^
08:21:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
08:21:53         importJob.setImageName(omero.rtypes.rstring(name));
08:21:53                  ^
08:21:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
08:21:53         importJob.setImageDescription(omero.rtypes.rstring(desc));
08:21:53                  ^
08:21:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
08:21:53         ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
08:21:53         ^
08:21:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
08:21:53         ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
08:21:53                           ^
08:21:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
08:21:53         final String savedName = sent.getImageName().getValue().toString();
08:21:53                                      ^
08:21:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
08:21:53         final String savedDesc = sent.getImageDescription().getValue().toString();
08:21:53                                      ^
08:21:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
08:21:53         final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
08:21:53               ^
08:21:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
08:21:53         final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
08:21:53                                               ^
08:21:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
08:21:53         final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
08:21:53                                                        ^
08:21:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
08:21:53         final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
08:21:53                                                        ^
08:21:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
08:21:53         RoiResult r = svc.findByImage(image.getId().getValue(),
08:21:53                          ^
08:21:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
08:21:53         List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
08:21:53                                 ^
08:21:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
08:21:53         l = svc.getRoiMeasurements(image.getId().getValue(), options);
08:21:53                ^
08:21:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
08:21:53         l = svc.getRoiMeasurements(image.getId().getValue(), options);
08:21:53                ^
08:21:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
08:21:53         List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
08:21:53                                 ^
08:21:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
08:21:53         Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
08:21:53                                          ^
08:21:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
08:21:53         List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
08:21:53                                 ^
08:21:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
08:21:53         table = svc.getTable(f.getId().getValue());
08:21:53                    ^
08:21:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
08:21:53         RoiResult r = svc.findByImage(image.getId().getValue(),
08:21:53                          ^
08:21:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
08:21:53         r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
08:21:53                ^
08:21:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
08:21:53         r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
08:21:53                ^
08:21:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
08:21:53         r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
08:21:53                ^
08:21:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
08:21:53         r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
08:21:53                ^
08:21:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
08:21:53             null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
08:21:53                   ^
08:21:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
08:21:53             null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
08:21:53                                   ^
08:21:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
08:21:53             new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
08:21:53                                    ^
08:21:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
08:21:53             new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
08:21:53                                                    ^
08:21:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Long(long) in Long has been deprecated and marked for removal
08:21:53             Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
08:21:53                                       ^
08:21:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
08:21:53             Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
08:21:53                                                        ^
08:21:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
08:21:53             Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
08:21:53                                                                        ^
08:21:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
08:21:53         inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
08:21:53                                        ^
08:21:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
08:21:53         inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
08:21:53                                                         ^
08:21:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
08:21:53         inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
08:21:53                                        ^
08:21:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
08:21:53         inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
08:21:53                                                        ^
08:21:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
08:21:53         inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
08:21:53                                        ^
08:21:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
08:21:53         inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
08:21:53                                                        ^
08:21:54 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
08:21:54         inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
08:21:54                                        ^
08:21:54 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
08:21:54         inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
08:21:54                                                        ^
08:21:54 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
08:21:54         inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
08:21:54                                        ^
08:21:54 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
08:21:54         inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
08:21:54                                                        ^
08:21:54 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
08:21:54                 svc.getShapeStatsRestricted(
08:21:54                    ^
08:21:54 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
08:21:54         final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
08:21:54                                        ^
08:21:54 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
08:21:54         projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
08:21:54                                      ^
08:21:54 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
08:21:54         request.typesToIgnore = Collections.singletonList("TagAnnotation");
08:21:54                ^
08:21:54 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
08:21:54         request.typesToIgnore = Collections.singletonList("IAnnotationLink");
08:21:54                ^
08:21:54 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
08:21:54         request.typesToIgnore = Collections.singletonList("Annotation");
08:21:54                ^
08:21:54 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
08:21:54                     request.typesToIgnore = Collections.singletonList("Annotation");
08:21:54                            ^
08:21:54 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
08:21:54         projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
08:21:54                                      ^
08:21:54 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
08:21:54         p2.setRelatedTo(p1);
08:21:54           ^
08:21:54 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
08:21:54         Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
08:21:54                                           ^
08:21:54 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
08:21:54         pixels1.setRelatedTo(pixels2);
08:21:54                ^
08:21:54 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
08:21:54         Pixels pixels = pixels1.getRelatedTo();
08:21:54                                ^
08:21:54 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
08:21:54         Assert.assertNull(pixels1.getRelatedTo());
08:21:54                                  ^
08:21:54 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
08:21:54         pixels1.setRelatedTo(pixels2);
08:21:54                ^
08:21:54 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
08:21:54         Pixels pixels = pixels1.getRelatedTo();
08:21:54                                ^
08:21:54 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
08:21:54         Assert.assertNull(pixels1.getRelatedTo());
08:21:54                                  ^
08:21:54 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
08:21:54         List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
08:21:54                                 ^
08:21:54 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
08:21:54         l = svc.getRoiMeasurements(image.getId().getValue(), options);
08:21:54                ^
08:21:54 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
08:21:54         List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
08:21:54                                 ^
08:21:54 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
08:21:54         l = svc.getRoiMeasurements(image.getId().getValue(), options);
08:21:54                ^
08:21:55 Note: Some input files use unchecked or unsafe operations.
08:21:55 Note: Recompile with -Xlint:unchecked for details.
08:21:55 92 warnings
08:21:55 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_719692849.tmp
08:21:55 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar
08:21:55 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
08:21:55 :: delivering :: omero#OmeroJava-test;working@5ffef7c1fdfa :: 5.6.3-689-547cc34433-ice36-b109 :: integration :: Wed Oct 14 08:21:33 UTC 2026
08:21:55 	delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml
08:21:55 :: publishing :: omero#OmeroJava-test
08:21:55 	published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-689-547cc34433-ice36-b109.jar
08:21:55 	published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-689-547cc34433-ice36-b109.xml
08:21:55 
08:21:55 build-eclipse:
08:21:55 No sub-builds to iterate on
08:21:56 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
08:21:56 
08:21:56 retrieve:
08:21:56 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
08:21:56 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
08:22:01 
08:22:01 prepare:
08:22:01 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
08:22:06 
08:22:06 release-clients:
08:22:06 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-689-547cc34433-ice36-b109.zip
08:22:13 
08:22:13 release-zip:
08:22:13 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-689-547cc34433-ice36-b109.zip
08:22:27 
08:22:27 BUILD SUCCESSFUL
08:22:27 Total time: 4 minutes 58 seconds
08:22:27 ++ '[' -d .git ']'
08:22:27 ++ python3 ./build.py release-src
08:22:27 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
08:22:29 
08:22:29 release-src-git:
08:22:29 Releasing openmicroscopy-5.6.3-689-547cc34433-ice36-b109
08:22:30   - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-689-547cc34433-ice36-b109.zip
08:22:30   - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-689-547cc34433-ice36-b109-base.zip
08:22:32 
08:22:32 BUILD SUCCESSFUL
08:22:32 Total time: 4 seconds
08:22:32 ++ echo BUILD_NUMBER=109
08:22:32 ++ echo OMERO_BRANCH=merge_ci
08:22:32 ++ git_info
08:22:32 +++ git rev-parse HEAD
08:22:32 ++ HEAD=547cc34433c9ab76e1a43d5af420723c326789c3
08:22:32 ++ git log --max-count=1 547cc34433c9ab76e1a43d5af420723c326789c3
08:22:32 ++ env
08:22:32 ++ sort
08:22:32 Archiving artifacts
08:22:50 Finished: SUCCESS