00:40:21Started by upstream project "Trigger" build number 12400:40:21originally caused by:
00:40:21 Started by timer
00:40:21Running as SYSTEM
00:40:21Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
00:40:21The recommended git tool is: NONE
00:40:21No credentials specified
00:40:21 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10
00:40:21Fetching changes from the remote Git repository
00:40:21 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
00:40:21Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git00:40:21 > git --version # timeout=10
00:40:21 > git --version # 'git version 2.39.3'
00:40:21 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
00:40:26 > git rev-parse origin/merge_ci^{commit} # timeout=10
00:40:26Checking out Revision 4cb1221d440e1b2f8963a4771b517c9624c49a76 (origin/merge_ci)
00:40:26 > git config core.sparsecheckout # timeout=10
00:40:26 > git checkout -f 4cb1221d440e1b2f8963a4771b517c9624c49a76 # timeout=10
00:40:26Commit message: "Add version.properties to etc/omero.properties"
00:40:26 > git rev-list --no-walk 8dd6a7a72ed85379285ba81c6840712c14209a00 # timeout=10
00:40:26Cleaning workspace
00:40:26 > git rev-parse --verify HEAD # timeout=10
00:40:26Resetting working tree
00:40:26 > git reset --hard # timeout=10
00:40:26 > git clean -fdx # timeout=10
00:40:27Copied 6 artifacts from "OMERO-python-superbuild-build" build number 10900:40:27[OMERO-build] $ /bin/bash -xe /tmp/jenkins11108147834091070581.sh
00:40:27+ mv omero-scripts/dist/omero_scripts-5.8.3.dev0.tar.gz .
00:40:27+ cd src
00:40:27+ export OMERO_BRANCH=merge_ci
00:40:27+ OMERO_BRANCH=merge_ci
00:40:27+ OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
00:40:27+ source /home/omero/settings.env
00:40:27++ OMERO_DB_HOST=pg
00:40:27++ OMERO_DB_USER=postgres
00:40:27++ OMERO_DB_PASS=
00:40:27++ OMERO_ROOT_PASS=omero
00:40:27++ OMERO_DATA_DIR=/OMERO
00:40:27++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
00:40:27+ python3 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
00:40:30+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl00:40:32Collecting zeroc-ice==3.6.5
00:40:33 Downloading https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl (31.3 MB)
00:40:35WARNING: You are using pip version 21.2.3; however, version 24.1.1 is available.
00:40:35You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command.
00:40:35+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U setuptools omero-py
00:40:35Requirement already satisfied: setuptools in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (70.2.0)
00:40:36Requirement already satisfied: omero-py in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (5.19.3)
00:40:36Requirement already satisfied: appdirs in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.4.4)
00:40:36Requirement already satisfied: urllib3<2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.18)
00:40:36Requirement already satisfied: portalocker in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.8.2)
00:40:36Requirement already satisfied: requests in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.31.0)
00:40:36Requirement already satisfied: numpy<2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.4)
00:40:36Requirement already satisfied: future in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.0.0)
00:40:36Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (3.6.5)
00:40:36Requirement already satisfied: PyYAML in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (6.0.1)
00:40:36Requirement already satisfied: Pillow>=10.0.0 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (10.2.0)
00:40:36Requirement already satisfied: certifi>=2017.4.17 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (2024.2.2)
00:40:36Requirement already satisfied: charset-normalizer<4,>=2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.3.2)
00:40:36Requirement already satisfied: idna<4,>=2.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.6)
00:40:36WARNING: You are using pip version 21.2.3; however, version 24.1.1 is available.
00:40:36You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command.
00:40:36+ source docs/hudson/OMERO.sh
00:40:36++ set -e
00:40:36++ set -u
00:40:36++ set -x
00:40:36++ source docs/hudson/functions.sh
00:40:36++ echo Building merge_ci
00:40:36Building merge_ci
00:40:36++ python3 ./build.py build-dev release-all
00:40:37OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0
00:40:37Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
00:40:3800:40:38check-ivy:
00:40:38Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
00:40:38Created dir: /home/omero/workspace/OMERO-build/src/target
00:40:39:: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ ::
00:40:39:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:40:3900:40:39build-scons:
00:40:39Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
00:40:40No sub-builds to iterate on
00:40:40Entering /home/omero/workspace/OMERO-build/src/components/tools...
00:40:4000:40:40buildlist:
00:40:40:: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ ::
00:40:40:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:40:4000:40:40clean:
00:40:40Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:40:41Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:40:4100:40:41python-clean:
00:40:41WARNING: '' not a valid package name; please use only .-separated package names in setup.py
00:40:41/usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-475-4cb1221d44-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
00:40:41 warnings.warn(
00:40:41running clean
00:40:41Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
00:40:41Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
00:40:4100:40:41python-clean:
00:40:41WARNING: '' not a valid package name; please use only .-separated package names in setup.py
00:40:41/usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-475-4cb1221d44-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
00:40:41 warnings.warn(
00:40:41running clean
00:40:41Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
00:40:41Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
00:40:41Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:40:41Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:40:4100:40:41python-clean:
00:40:41WARNING: '' not a valid package name; please use only .-separated package names in setup.py
00:40:41/usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-475-4cb1221d44-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
00:40:41 warnings.warn(
00:40:41running clean
00:40:42Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
00:40:42Deleting directory /home/omero/workspace/OMERO-build/src/target
00:40:4200:40:42build-scons:
00:40:42Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
00:40:4200:40:42build:
00:40:42No sub-builds to iterate on
00:40:42Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:40:42Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:40:42Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
00:40:42Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
00:40:4200:40:42tools-init:
00:40:42no-op
00:40:4200:40:42retrieve:
00:40:42:: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ ::
00:40:42:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:41:0300:41:03prepare:
00:41:03Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
00:41:03Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
00:41:03Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
00:41:03Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:41:03Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:41:03Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
00:41:03Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
00:41:03Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:41:03Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:41:03Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:41:03Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:41:03Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:41:03Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:41:03Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:41:03Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:41:0300:41:03pre-compile:
00:41:03Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:41:03Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:41:03Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:41:03Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:41:03Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:41:0300:41:03compile:
00:41:03no-op
00:41:0300:41:03package:
00:41:03Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
00:41:0400:41:04install:
00:41:04:: delivering :: omero#omero_client;working@2fed98c19e20 :: 5.6.3-475-4cb1221d44-ice36 :: integration :: Thu Jul 04 00:40:42 UTC 2024
00:41:04 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
00:41:04:: publishing :: omero#omero_client
00:41:04 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-475-4cb1221d44-ice36/omero_client-5.6.3-475-4cb1221d44-ice36.jar
00:41:04 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-475-4cb1221d44-ice36/omero_client-5.6.3-475-4cb1221d44-ice36.xml
00:41:04Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:41:04Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:41:0400:41:04retrieve:
00:41:04:: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ ::
00:41:04:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:41:05Entering /home/omero/workspace/OMERO-build/src/components/tools...
00:41:0500:41:05dist:
00:41:05Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
00:41:05Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
00:41:05Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
00:41:05Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.8.3.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
00:41:05Copying 28 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
00:41:05Copying 28 files to /home/omero/workspace/OMERO-build/src/dist
00:41:05Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
00:41:05Entering /home/omero/workspace/OMERO-build/src/components/tests...
00:41:05Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
00:41:0500:41:05copy-licenses:
00:41:05Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
00:41:05Created dir: /home/omero/workspace/OMERO-build/src/dist/share
00:41:05Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
00:41:0600:41:06copy-history:
00:41:06Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
00:41:0600:41:06copy-etc:
00:41:06Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
00:41:06Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
00:41:0600:41:06copy-sql:
00:41:06Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
00:41:2400:41:24copy-server:
00:41:24 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.0.11 won
00:41:2400:41:24copy-client:
00:41:24Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
00:41:26 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.0.11 won
00:41:2600:41:26update-version:
00:41:26Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
00:41:2600:41:26create-workdirs:
00:41:26Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
00:41:26Created dir: /home/omero/workspace/OMERO-build/src/dist/var
00:41:2600:41:26copy-luts:
00:41:26Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
00:41:26Copying 39 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
00:41:2700:41:27test-compile:
00:41:27:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:41:27Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
00:41:27Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:41:27Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:41:27Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:41:27Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:41:27Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
00:41:27Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
00:41:2700:41:27testng-init:
00:41:27:: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ ::
00:41:27:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:41:3100:41:31,531 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
00:41:3100:41:31,534 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4046b407 - No custom configurators were discovered as a service.
00:41:3100:41:31,534 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4046b407 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
00:41:3100:41:31,538 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4046b407 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
00:41:3100:41:31,539 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
00:41:3100:41:31,539 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
00:41:3100:41:31,540 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4046b407 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
00:41:3100:41:31,540 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4046b407 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
00:41:3100:41:31,542 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4046b407 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
00:41:3100:41:31,542 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
00:41:3100:41:31,542 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
00:41:3100:41:31,543 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@39b266b2 - Resource [logback.xml] occurs multiple times on the classpath.
00:41:3100:41:31,543 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@39b266b2 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
00:41:3100:41:31,543 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@39b266b2 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
00:41:3100:41:31,759 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
00:41:3100:41:31,759 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
00:41:3100:41:31,778 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
00:41:3100:41:31,780 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@5ea7ad41 - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
00:41:3100:41:31,780 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@5ea7ad41 - Please move "immediateFlush" property into the enclosing appender.
00:41:3100:41:31,858 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@5ea7ad41 - Setting the "immediateFlush" property of the enclosing appender to true
00:41:3100:41:31,859 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
00:41:3100:41:31,859 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
00:41:3100:41:31,859 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
00:41:3100:41:31,859 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
00:41:3100:41:31,859 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
00:41:3100:41:31,859 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
00:41:3100:41:31,860 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@3dc70c5a - End of configuration.
00:41:3100:41:31,862 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48d46169 - Registering current configuration as safe fallback point
00:41:3100:41:31,862 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4046b407 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 320 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
00:41:3100:41:31lifecycle.test-compile:
00:41:31Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
00:41:31Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
00:41:32warning: [options] bootstrap class path not set in conjunction with -source 8
00:41:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:41:35import omero.grid.RawAccessRequest;
00:41:35 ^
00:41:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:41:35import omero.grid.RawAccessRequest;
00:41:35 ^
00:41:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:41:35import omero.grid.RawAccessRequest;
00:41:35 ^
00:41:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
00:41:35import omero.model.ImportJob;
00:41:35 ^
00:41:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
00:41:35import omero.model.ImportJobI;
00:41:35 ^
00:41:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated
00:41:36 IObject link = (IObject) linkClass.newInstance();
00:41:36 ^
00:41:36 where T is a type-variable:
00:41:36 T extends Object declared in class Class
00:41:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
00:41:36 T copy = (T) obj.getClass().newInstance();
00:41:36 ^
00:41:36 where T is a type-variable:
00:41:36 T extends Object declared in class Class
00:41:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:41:36 RawAccessRequest raw = new RawAccessRequest();
00:41:36 ^
00:41:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:41:36 RawAccessRequest raw = new RawAccessRequest();
00:41:36 ^
00:41:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
00:41:36 raw.repoUuid = legacy.root().getHash().getValue();
00:41:36 ^
00:41:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
00:41:36 raw.command = "rm";
00:41:36 ^
00:41:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
00:41:36 raw.args = Arrays.asList(path);
00:41:36 ^
00:41:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
00:41:36 final IObject link = linkClass.newInstance();
00:41:36 ^
00:41:36 where T is a type-variable:
00:41:36 T extends Object declared in class Class
00:41:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
00:41:37 originalLink.setChild(annotationClass.newInstance());
00:41:37 ^
00:41:37 where T is a type-variable:
00:41:37 T extends Object declared in class Class
00:41:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
00:41:37 RoiResult r = svc.findByImage(id, new RoiOptions());
00:41:37 ^
00:41:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:41:38 final RawAccessRequest request = new RawAccessRequest();
00:41:38 ^
00:41:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:41:38 final RawAccessRequest request = new RawAccessRequest();
00:41:38 ^
00:41:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
00:41:38 request.repoUuid = repo.root().getHash().getValue();
00:41:38 ^
00:41:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
00:41:38 request.command = "exists";
00:41:38 ^
00:41:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
00:41:38 request.args = Collections.singletonList(dirPath);
00:41:38 ^
00:41:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:41:38 final RawAccessRequest request = new RawAccessRequest();
00:41:38 ^
00:41:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:41:38 final RawAccessRequest request = new RawAccessRequest();
00:41:38 ^
00:41:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
00:41:38 request.repoUuid = repo.root().getHash().getValue();
00:41:38 ^
00:41:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
00:41:38 request.command = "exists";
00:41:38 ^
00:41:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
00:41:38 request.args = Collections.singletonList(dirName);
00:41:38 ^
00:41:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
00:41:38 final ImportJob importJob = new ImportJobI();
00:41:38 ^
00:41:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
00:41:38 final ImportJob importJob = new ImportJobI();
00:41:38 ^
00:41:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
00:41:38 importJob.setImageName(omero.rtypes.rstring(name));
00:41:38 ^
00:41:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
00:41:38 importJob.setImageDescription(omero.rtypes.rstring(desc));
00:41:38 ^
00:41:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
00:41:38 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
00:41:38 ^
00:41:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
00:41:38 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
00:41:38 ^
00:41:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
00:41:38 final String savedName = sent.getImageName().getValue().toString();
00:41:38 ^
00:41:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
00:41:38 final String savedDesc = sent.getImageDescription().getValue().toString();
00:41:38 ^
00:41:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
00:41:38 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
00:41:38 ^
00:41:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
00:41:38 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
00:41:38 ^
00:41:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
00:41:38 final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
00:41:38 ^
00:41:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
00:41:38 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
00:41:38 ^
00:41:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
00:41:38 RoiResult r = svc.findByImage(image.getId().getValue(),
00:41:38 ^
00:41:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:41:38 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:41:38 ^
00:41:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:41:38 l = svc.getRoiMeasurements(image.getId().getValue(), options);
00:41:38 ^
00:41:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:41:38 l = svc.getRoiMeasurements(image.getId().getValue(), options);
00:41:38 ^
00:41:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:41:38 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:41:38 ^
00:41:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
00:41:38 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
00:41:38 ^
00:41:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:41:38 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:41:38 ^
00:41:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
00:41:38 table = svc.getTable(f.getId().getValue());
00:41:38 ^
00:41:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
00:41:38 RoiResult r = svc.findByImage(image.getId().getValue(),
00:41:38 ^
00:41:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
00:41:38 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
00:41:38 ^
00:41:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
00:41:38 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
00:41:38 ^
00:41:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
00:41:38 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
00:41:38 ^
00:41:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
00:41:38 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
00:41:38 ^
00:41:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
00:41:38 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
00:41:38 ^
00:41:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
00:41:38 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
00:41:38 ^
00:41:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
00:41:38 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
00:41:38 ^
00:41:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
00:41:38 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
00:41:38 ^
00:41:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Long(long) in Long has been deprecated
00:41:38 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
00:41:38 ^
00:41:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
00:41:38 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
00:41:38 ^
00:41:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
00:41:38 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
00:41:38 ^
00:41:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
00:41:38 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
00:41:38 ^
00:41:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
00:41:38 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
00:41:38 ^
00:41:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
00:41:38 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
00:41:38 ^
00:41:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
00:41:38 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
00:41:38 ^
00:41:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
00:41:38 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
00:41:38 ^
00:41:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
00:41:38 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
00:41:38 ^
00:41:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
00:41:38 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
00:41:38 ^
00:41:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
00:41:38 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
00:41:38 ^
00:41:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
00:41:38 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
00:41:38 ^
00:41:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
00:41:38 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
00:41:38 ^
00:41:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
00:41:38 svc.getShapeStatsRestricted(
00:41:38 ^
00:41:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
00:41:38 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
00:41:38 ^
00:41:39/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:41:39 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
00:41:39 ^
00:41:39/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
00:41:39 request.typesToIgnore = Collections.singletonList("TagAnnotation");
00:41:39 ^
00:41:39/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
00:41:39 request.typesToIgnore = Collections.singletonList("IAnnotationLink");
00:41:39 ^
00:41:39/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
00:41:39 request.typesToIgnore = Collections.singletonList("Annotation");
00:41:39 ^
00:41:39/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
00:41:39 request.typesToIgnore = Collections.singletonList("Annotation");
00:41:39 ^
00:41:39/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:41:39 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
00:41:39 ^
00:41:39/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:41:39 p2.setRelatedTo(p1);
00:41:39 ^
00:41:39/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:41:39 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
00:41:39 ^
00:41:39/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:41:39 pixels1.setRelatedTo(pixels2);
00:41:39 ^
00:41:39/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:41:39 Pixels pixels = pixels1.getRelatedTo();
00:41:39 ^
00:41:39/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:41:39 Assert.assertNull(pixels1.getRelatedTo());
00:41:39 ^
00:41:39/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:41:39 pixels1.setRelatedTo(pixels2);
00:41:39 ^
00:41:39/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:41:39 Pixels pixels = pixels1.getRelatedTo();
00:41:39 ^
00:41:39/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:41:39 Assert.assertNull(pixels1.getRelatedTo());
00:41:39 ^
00:41:39/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:41:39 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:41:39 ^
00:41:39/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:41:39 l = svc.getRoiMeasurements(image.getId().getValue(), options);
00:41:39 ^
00:41:39/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:41:39 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:41:39 ^
00:41:39/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:41:39 l = svc.getRoiMeasurements(image.getId().getValue(), options);
00:41:39 ^
00:41:39Note: Some input files use unchecked or unsafe operations.
00:41:39Note: Recompile with -Xlint:unchecked for details.
00:41:3988 warnings
00:41:39Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_366470478.tmp
00:41:39Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar
00:41:39:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:41:39:: delivering :: omero#OmeroJava-test;working@2fed98c19e20 :: 5.6.3-475-4cb1221d44-ice36 :: integration :: Thu Jul 04 00:41:27 UTC 2024
00:41:39 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml
00:41:39:: publishing :: omero#OmeroJava-test
00:41:39 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-475-4cb1221d44-ice36.jar
00:41:39 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-475-4cb1221d44-ice36.xml
00:41:3900:41:39build-eclipse:
00:41:39No sub-builds to iterate on
00:41:39Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
00:41:4000:41:40retrieve:
00:41:40:: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ ::
00:41:40:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:41:4400:41:44prepare:
00:41:44Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
00:41:4900:41:49release-clients:
00:41:49Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-475-4cb1221d44-ice36.zip
00:41:5500:41:55release-zip:
00:41:55Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-475-4cb1221d44-ice36.zip
00:42:0800:42:08BUILD SUCCESSFUL
00:42:08Total time: 1 minute 30 seconds
00:42:08++ '[' -d .git ']'
00:42:08++ python3 ./build.py release-src
00:42:08OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0
00:42:08Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
00:42:0800:42:08release-src-git:
00:42:08Releasing openmicroscopy-5.6.3-475-4cb1221d44-ice36
00:42:10 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-475-4cb1221d44-ice36.zip
00:42:10 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-475-4cb1221d44-ice36-base.zip
00:42:1200:42:12BUILD SUCCESSFUL
00:42:12Total time: 4 seconds
00:42:12++ echo BUILD_NUMBER=110
00:42:12++ echo OMERO_BRANCH=merge_ci
00:42:12++ git_info
00:42:12+++ git rev-parse HEAD
00:42:12++ HEAD=4cb1221d440e1b2f8963a4771b517c9624c49a76
00:42:12++ git log --max-count=1 4cb1221d440e1b2f8963a4771b517c9624c49a76
00:42:12++ env
00:42:12++ sort
00:42:12Archiving artifacts
00:42:42Finished: SUCCESS
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