15:07:35Started by upstream project "Trigger" build number 3015:07:35originally caused by:
15:07:35 Started by user devspace15:07:35Running as SYSTEM
15:07:35Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
15:07:35The recommended git tool is: NONE
15:07:35No credentials specified
15:07:35 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10
15:07:35Fetching changes from the remote Git repository
15:07:35 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
15:07:35Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git15:07:35 > git --version # timeout=10
15:07:35 > git --version # 'git version 2.47.3'
15:07:35 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
15:07:35 > git rev-parse origin/merge_ci^{commit} # timeout=10
15:07:35Checking out Revision b8f107afdf4da0ee6f9f01b199024c3d20f6af28 (origin/merge_ci)
15:07:35 > git config core.sparsecheckout # timeout=10
15:07:35 > git checkout -f b8f107afdf4da0ee6f9f01b199024c3d20f6af28 # timeout=10
15:07:35Commit message: "Add version.properties to etc/omero.properties"
15:07:35 > git rev-list --no-walk 43bbcc5d9d3c7ce0364f55e29a4eaeeb2600b588 # timeout=10
15:07:35Cleaning workspace
15:07:35 > git rev-parse --verify HEAD # timeout=10
15:07:35Resetting working tree
15:07:35 > git reset --hard # timeout=10
15:07:36 > git clean -fdx # timeout=10
15:07:36Copied 6 artifacts from "OMERO-python-superbuild-build" build number 1115:07:36[OMERO-build] $ /bin/bash -xe /tmp/jenkins6652581004161963240.sh
15:07:36+ mv omero-scripts/dist/omero_scripts-5.9.2.dev0.tar.gz .
15:07:36+ cd src
15:07:36+ export OMERO_BRANCH=merge_ci
15:07:36+ OMERO_BRANCH=merge_ci
15:07:36+ OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
15:07:36+ rm -rf /home/omero/workspace/OMERO-build/omero-virtualenv
15:07:36+ source /home/omero/settings.env
15:07:36++ OMERO_DB_HOST=pg
15:07:36++ OMERO_DB_USER=postgres
15:07:36++ OMERO_DB_PASS=
15:07:36++ OMERO_ROOT_PASS=omero
15:07:36++ OMERO_DATA_DIR=/OMERO
15:07:36++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
15:07:36+ python3.11 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
15:07:40+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl15:07:40Collecting zeroc-ice==3.6.5
15:07:40 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
15:07:42 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 10.5 MB/s eta 0:00:00
15:07:43Installing collected packages: zeroc-ice
15:07:43Successfully installed zeroc-ice-3.6.5
15:07:4315:07:43[notice] A new release of pip available: 22.3.1 -> 25.3
15:07:43[notice] To update, run: python3.11 -m pip install --upgrade pip
15:07:43+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U 'setuptools<66' omero-py
15:07:44Requirement already satisfied: setuptools<66 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (65.5.1)
15:07:44Collecting setuptools<66
15:07:44 Using cached setuptools-65.7.0-py3-none-any.whl (1.2 MB)
15:07:44Collecting omero-py
15:07:44 Using cached omero_py-5.21.3-py3-none-any.whl (2.8 MB)
15:07:44Collecting appdirs
15:07:44 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
15:07:44Collecting future
15:07:44 Using cached future-1.0.0-py3-none-any.whl (491 kB)
15:07:45Collecting numpy<3
15:07:45 Using cached numpy-2.4.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.6 MB)
15:07:45Collecting Pillow>=10.0.0
15:07:45 Using cached pillow-12.1.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (7.0 MB)
15:07:46Collecting PyYAML
15:07:46 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB)
15:07:46Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (from omero-py) (3.6.5)
15:07:46Collecting requests
15:07:46 Using cached requests-2.32.5-py3-none-any.whl (64 kB)
15:07:46Collecting portalocker
15:07:46 Using cached portalocker-3.2.0-py3-none-any.whl (22 kB)
15:07:46Collecting charset_normalizer<4,>=2
15:07:46 Using cached charset_normalizer-3.4.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (151 kB)
15:07:46Collecting idna<4,>=2.5
15:07:46 Using cached idna-3.11-py3-none-any.whl (71 kB)
15:07:46Collecting urllib3<3,>=1.21.1
15:07:46 Using cached urllib3-2.6.2-py3-none-any.whl (131 kB)
15:07:46Collecting certifi>=2017.4.17
15:07:46 Using cached certifi-2026.1.4-py3-none-any.whl (152 kB)
15:07:46Installing collected packages: appdirs, urllib3, setuptools, PyYAML, portalocker, Pillow, numpy, idna, future, charset_normalizer, certifi, requests, omero-py
15:07:46 Attempting uninstall: setuptools
15:07:46 Found existing installation: setuptools 65.5.1
15:07:46 Uninstalling setuptools-65.5.1:
15:07:46 Successfully uninstalled setuptools-65.5.1
15:07:52Successfully installed Pillow-12.1.0 PyYAML-6.0.3 appdirs-1.4.4 certifi-2026.1.4 charset_normalizer-3.4.4 future-1.0.0 idna-3.11 numpy-2.4.0 omero-py-5.21.3 portalocker-3.2.0 requests-2.32.5 setuptools-65.7.0 urllib3-2.6.2
15:07:5215:07:52[notice] A new release of pip available: 22.3.1 -> 25.3
15:07:52[notice] To update, run: python3.11 -m pip install --upgrade pip
15:07:52+ source /home/omero/workspace/OMERO-build/omero-virtualenv/bin/activate
15:07:52++ deactivate nondestructive
15:07:52++ '[' -n '' ']'
15:07:52++ '[' -n '' ']'
15:07:52++ hash -r
15:07:52++ '[' -n '' ']'
15:07:52++ unset VIRTUAL_ENV
15:07:52++ unset VIRTUAL_ENV_PROMPT
15:07:52++ '[' '!' nondestructive = nondestructive ']'
15:07:52++ VIRTUAL_ENV=/home/omero/workspace/OMERO-build/omero-virtualenv
15:07:52++ export VIRTUAL_ENV
15:07:52++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
15:07:52++ PATH=/home/omero/workspace/OMERO-build/omero-virtualenv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
15:07:52++ export PATH
15:07:52++ '[' -n '' ']'
15:07:52++ '[' -z '' ']'
15:07:52++ _OLD_VIRTUAL_PS1=
15:07:52++ PS1='(omero-virtualenv) '
15:07:52++ export PS1
15:07:52++ VIRTUAL_ENV_PROMPT='(omero-virtualenv) '
15:07:52++ export VIRTUAL_ENV_PROMPT
15:07:52++ hash -r
15:07:52+ source docs/hudson/OMERO.sh
15:07:52++ set -e
15:07:52++ set -u
15:07:52++ set -x
15:07:52++ source docs/hudson/functions.sh
15:07:52++ echo Building merge_ci
15:07:52Building merge_ci
15:07:52++ python3 ./build.py build-dev release-all
15:07:52Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
15:07:5315:07:53check-ivy:
15:07:53Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
15:07:53Created dir: /home/omero/workspace/OMERO-build/src/target
15:07:53:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
15:07:53:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
15:07:5315:07:53build-scons:
15:07:53Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
15:07:53No sub-builds to iterate on
15:07:53Entering /home/omero/workspace/OMERO-build/src/components/tools...
15:07:5415:07:54buildlist:
15:07:54:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
15:07:54:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
15:07:5415:07:54clean:
15:07:54Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
15:07:54Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
15:07:5415:07:54python-clean:
15:07:54WARNING: '' not a valid package name; please use only .-separated package names in setup.py
15:07:54/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-578-b8f107afdf-ice36-b11') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
15:07:54 warnings.warn(
15:07:54running clean
15:07:54Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
15:07:54Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
15:07:5415:07:54python-clean:
15:07:54WARNING: '' not a valid package name; please use only .-separated package names in setup.py
15:07:54/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-578-b8f107afdf-ice36-b11') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
15:07:54 warnings.warn(
15:07:54running clean
15:07:54Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
15:07:54Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
15:07:55Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
15:07:55Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
15:07:5515:07:55python-clean:
15:07:55WARNING: '' not a valid package name; please use only .-separated package names in setup.py
15:07:55/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-578-b8f107afdf-ice36-b11') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
15:07:55 warnings.warn(
15:07:55running clean
15:07:55Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
15:07:55Deleting directory /home/omero/workspace/OMERO-build/src/target
15:07:5515:07:55build-scons:
15:07:55Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
15:07:5515:07:55build:
15:07:55No sub-builds to iterate on
15:07:55Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
15:07:55Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
15:07:55Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
15:07:55Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
15:07:5515:07:55tools-init:
15:07:55no-op
15:07:5515:07:55retrieve:
15:07:55:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
15:07:55:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
15:08:3515:08:35prepare:
15:08:35Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
15:08:35Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
15:08:35Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
15:08:35Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
15:08:35Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
15:08:35Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
15:08:35Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
15:08:35Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
15:08:35Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
15:08:35Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
15:08:35Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
15:08:35Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
15:08:35Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
15:08:35Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
15:08:35Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
15:08:3515:08:35pre-compile:
15:08:35Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
15:08:36Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
15:08:36Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
15:08:36Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
15:08:36Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
15:08:3615:08:36compile:
15:08:36no-op
15:08:3615:08:36package:
15:08:36Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
15:08:3615:08:36install:
15:08:36:: delivering :: omero#omero_client;working@3cd06cac5102 :: 5.6.3-578-b8f107afdf-ice36-b11 :: integration :: Wed Jan 07 15:07:55 UTC 2026
15:08:36 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
15:08:36:: publishing :: omero#omero_client
15:08:36 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-578-b8f107afdf-ice36-b11/omero_client-5.6.3-578-b8f107afdf-ice36-b11.jar
15:08:36 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-578-b8f107afdf-ice36-b11/omero_client-5.6.3-578-b8f107afdf-ice36-b11.xml
15:08:36Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
15:08:36Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
15:08:3715:08:37retrieve:
15:08:37:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
15:08:37:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
15:08:37Entering /home/omero/workspace/OMERO-build/src/components/tools...
15:08:3715:08:37dist:
15:08:37Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
15:08:37Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
15:08:37Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
15:08:37Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.9.2.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
15:08:37Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
15:08:37Copying 29 files to /home/omero/workspace/OMERO-build/src/dist
15:08:37Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
15:08:37Entering /home/omero/workspace/OMERO-build/src/components/tests...
15:08:37Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
15:08:3715:08:37copy-licenses:
15:08:37Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
15:08:37Created dir: /home/omero/workspace/OMERO-build/src/dist/share
15:08:37Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
15:08:3715:08:37copy-history:
15:08:37Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
15:08:3715:08:37copy-etc:
15:08:37Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
15:08:37Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
15:08:3715:08:37copy-sql:
15:08:37Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
15:08:4315:08:43copy-server:
15:08:43 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.1.9 won
15:08:4315:08:43copy-client:
15:08:43Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
15:08:44 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.1.9 won
15:08:4415:08:44update-version:
15:08:44Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
15:08:4415:08:44create-workdirs:
15:08:44Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
15:08:44Created dir: /home/omero/workspace/OMERO-build/src/dist/var
15:08:44Created dir: /home/omero/workspace/OMERO-build/src/dist/var/tmp
15:08:4415:08:44copy-luts:
15:08:44Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
15:08:44Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
15:08:4415:08:44test-compile:
15:08:44:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
15:08:44Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
15:08:44Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
15:08:44Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
15:08:44Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
15:08:44Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
15:08:44Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
15:08:44Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
15:08:4415:08:44testng-init:
15:08:44:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
15:08:44:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
15:08:4715:08:47,203 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.16
15:08:4715:08:47,206 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a95fd1c - No custom configurators were discovered as a service.
15:08:4715:08:47,206 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a95fd1c - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
15:08:4715:08:47,209 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a95fd1c - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
15:08:4715:08:47,209 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
15:08:4715:08:47,209 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
15:08:4715:08:47,210 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a95fd1c - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
15:08:4715:08:47,210 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a95fd1c - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
15:08:4715:08:47,211 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a95fd1c - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
15:08:4715:08:47,212 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
15:08:4715:08:47,212 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
15:08:4715:08:47,213 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@278d2891 - Resource [logback.xml] occurs multiple times on the classpath.
15:08:4715:08:47,213 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@278d2891 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
15:08:4715:08:47,213 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@278d2891 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
15:08:4715:08:47,406 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
15:08:4715:08:47,406 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
15:08:4715:08:47,423 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
15:08:4715:08:47,425 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@5f065ddc - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
15:08:4715:08:47,425 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@5f065ddc - Please move "immediateFlush" property into the enclosing appender.
15:08:4715:08:47,481 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@5f065ddc - Setting the "immediateFlush" property of the enclosing appender to true
15:08:4715:08:47,482 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
15:08:4715:08:47,482 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
15:08:4715:08:47,482 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
15:08:4715:08:47,482 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
15:08:4715:08:47,482 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
15:08:4715:08:47,482 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
15:08:4715:08:47,483 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2c94299a - End of configuration.
15:08:4715:08:47,484 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@39fc5c09 - Registering current configuration as safe fallback point
15:08:4715:08:47,485 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a95fd1c - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 273 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
15:08:4715:08:47lifecycle.test-compile:
15:08:47Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
15:08:47Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
15:08:47warning: [options] bootstrap class path not set in conjunction with -source 8
15:08:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
15:08:48import omero.grid.RawAccessRequest;
15:08:48 ^
15:08:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
15:08:49import omero.grid.RawAccessRequest;
15:08:49 ^
15:08:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
15:08:49import omero.grid.RawAccessRequest;
15:08:49 ^
15:08:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
15:08:49import omero.model.ImportJob;
15:08:49 ^
15:08:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
15:08:49import omero.model.ImportJobI;
15:08:49 ^
15:08:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated
15:08:49 IObject link = (IObject) linkClass.newInstance();
15:08:49 ^
15:08:49 where T is a type-variable:
15:08:49 T extends Object declared in class Class
15:08:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
15:08:50 T copy = (T) obj.getClass().newInstance();
15:08:50 ^
15:08:50 where T is a type-variable:
15:08:50 T extends Object declared in class Class
15:08:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
15:08:50 RawAccessRequest raw = new RawAccessRequest();
15:08:50 ^
15:08:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
15:08:50 RawAccessRequest raw = new RawAccessRequest();
15:08:50 ^
15:08:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
15:08:50 raw.repoUuid = legacy.root().getHash().getValue();
15:08:50 ^
15:08:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
15:08:50 raw.command = "rm";
15:08:50 ^
15:08:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
15:08:50 raw.args = Arrays.asList(path);
15:08:50 ^
15:08:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
15:08:50 final IObject link = linkClass.newInstance();
15:08:50 ^
15:08:50 where T is a type-variable:
15:08:50 T extends Object declared in class Class
15:08:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
15:08:50 originalLink.setChild(annotationClass.newInstance());
15:08:50 ^
15:08:50 where T is a type-variable:
15:08:50 T extends Object declared in class Class
15:08:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
15:08:50 RoiResult r = svc.findByImage(id, new RoiOptions());
15:08:50 ^
15:08:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
15:08:51 final RawAccessRequest request = new RawAccessRequest();
15:08:51 ^
15:08:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
15:08:51 final RawAccessRequest request = new RawAccessRequest();
15:08:51 ^
15:08:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
15:08:51 request.repoUuid = repo.root().getHash().getValue();
15:08:51 ^
15:08:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
15:08:51 request.command = "exists";
15:08:51 ^
15:08:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
15:08:51 request.args = Collections.singletonList(dirPath);
15:08:51 ^
15:08:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
15:08:51 final RawAccessRequest request = new RawAccessRequest();
15:08:51 ^
15:08:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
15:08:51 final RawAccessRequest request = new RawAccessRequest();
15:08:51 ^
15:08:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
15:08:51 request.repoUuid = repo.root().getHash().getValue();
15:08:51 ^
15:08:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
15:08:51 request.command = "exists";
15:08:51 ^
15:08:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
15:08:51 request.args = Collections.singletonList(dirName);
15:08:51 ^
15:08:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
15:08:51 final ImportJob importJob = new ImportJobI();
15:08:51 ^
15:08:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
15:08:51 final ImportJob importJob = new ImportJobI();
15:08:51 ^
15:08:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
15:08:51 importJob.setImageName(omero.rtypes.rstring(name));
15:08:51 ^
15:08:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
15:08:51 importJob.setImageDescription(omero.rtypes.rstring(desc));
15:08:51 ^
15:08:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
15:08:51 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
15:08:51 ^
15:08:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
15:08:51 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
15:08:51 ^
15:08:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
15:08:51 final String savedName = sent.getImageName().getValue().toString();
15:08:51 ^
15:08:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
15:08:51 final String savedDesc = sent.getImageDescription().getValue().toString();
15:08:51 ^
15:08:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
15:08:51 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
15:08:51 ^
15:08:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
15:08:51 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
15:08:51 ^
15:08:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
15:08:51 final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
15:08:51 ^
15:08:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
15:08:51 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
15:08:51 ^
15:08:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
15:08:51 RoiResult r = svc.findByImage(image.getId().getValue(),
15:08:51 ^
15:08:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
15:08:51 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
15:08:51 ^
15:08:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
15:08:51 l = svc.getRoiMeasurements(image.getId().getValue(), options);
15:08:51 ^
15:08:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
15:08:51 l = svc.getRoiMeasurements(image.getId().getValue(), options);
15:08:51 ^
15:08:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
15:08:51 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
15:08:51 ^
15:08:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
15:08:51 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
15:08:51 ^
15:08:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
15:08:51 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
15:08:51 ^
15:08:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
15:08:51 table = svc.getTable(f.getId().getValue());
15:08:51 ^
15:08:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
15:08:51 RoiResult r = svc.findByImage(image.getId().getValue(),
15:08:51 ^
15:08:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
15:08:51 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
15:08:51 ^
15:08:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
15:08:51 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
15:08:51 ^
15:08:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
15:08:51 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
15:08:51 ^
15:08:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
15:08:51 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
15:08:51 ^
15:08:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
15:08:51 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
15:08:51 ^
15:08:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
15:08:51 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
15:08:51 ^
15:08:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
15:08:51 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
15:08:51 ^
15:08:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
15:08:51 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
15:08:51 ^
15:08:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Long(long) in Long has been deprecated and marked for removal
15:08:51 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
15:08:51 ^
15:08:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
15:08:51 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
15:08:51 ^
15:08:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
15:08:51 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
15:08:51 ^
15:08:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
15:08:51 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
15:08:51 ^
15:08:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
15:08:51 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
15:08:51 ^
15:08:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
15:08:51 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
15:08:51 ^
15:08:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
15:08:51 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
15:08:51 ^
15:08:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
15:08:51 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
15:08:51 ^
15:08:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
15:08:51 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
15:08:51 ^
15:08:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
15:08:51 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
15:08:51 ^
15:08:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
15:08:51 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
15:08:51 ^
15:08:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
15:08:51 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
15:08:51 ^
15:08:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
15:08:51 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
15:08:51 ^
15:08:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
15:08:51 svc.getShapeStatsRestricted(
15:08:51 ^
15:08:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
15:08:51 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
15:08:51 ^
15:08:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
15:08:52 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
15:08:52 ^
15:08:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
15:08:52 request.typesToIgnore = Collections.singletonList("TagAnnotation");
15:08:52 ^
15:08:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
15:08:52 request.typesToIgnore = Collections.singletonList("IAnnotationLink");
15:08:52 ^
15:08:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
15:08:52 request.typesToIgnore = Collections.singletonList("Annotation");
15:08:52 ^
15:08:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
15:08:52 request.typesToIgnore = Collections.singletonList("Annotation");
15:08:52 ^
15:08:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
15:08:52 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
15:08:52 ^
15:08:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
15:08:52 p2.setRelatedTo(p1);
15:08:52 ^
15:08:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
15:08:52 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
15:08:52 ^
15:08:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
15:08:52 pixels1.setRelatedTo(pixels2);
15:08:52 ^
15:08:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
15:08:52 Pixels pixels = pixels1.getRelatedTo();
15:08:52 ^
15:08:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
15:08:52 Assert.assertNull(pixels1.getRelatedTo());
15:08:52 ^
15:08:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
15:08:52 pixels1.setRelatedTo(pixels2);
15:08:52 ^
15:08:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
15:08:52 Pixels pixels = pixels1.getRelatedTo();
15:08:52 ^
15:08:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
15:08:52 Assert.assertNull(pixels1.getRelatedTo());
15:08:52 ^
15:08:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
15:08:52 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
15:08:52 ^
15:08:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
15:08:52 l = svc.getRoiMeasurements(image.getId().getValue(), options);
15:08:52 ^
15:08:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
15:08:52 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
15:08:52 ^
15:08:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
15:08:52 l = svc.getRoiMeasurements(image.getId().getValue(), options);
15:08:52 ^
15:08:52Note: Some input files use unchecked or unsafe operations.
15:08:52Note: Recompile with -Xlint:unchecked for details.
15:08:5288 warnings
15:08:52Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_1478071356.tmp
15:08:52Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar
15:08:52:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
15:08:52:: delivering :: omero#OmeroJava-test;working@3cd06cac5102 :: 5.6.3-578-b8f107afdf-ice36-b11 :: integration :: Wed Jan 07 15:08:44 UTC 2026
15:08:52 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml
15:08:52:: publishing :: omero#OmeroJava-test
15:08:52 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-578-b8f107afdf-ice36-b11.jar
15:08:52 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-578-b8f107afdf-ice36-b11.xml
15:08:5215:08:52build-eclipse:
15:08:52No sub-builds to iterate on
15:08:52Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
15:08:5215:08:52retrieve:
15:08:52:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
15:08:52:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
15:08:5415:08:54prepare:
15:08:54Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
15:08:5515:08:55release-clients:
15:08:55Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-578-b8f107afdf-ice36-b11.zip
15:09:0015:09:00release-zip:
15:09:00Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-578-b8f107afdf-ice36-b11.zip
15:09:1015:09:10BUILD SUCCESSFUL
15:09:10Total time: 1 minute 18 seconds
15:09:10++ '[' -d .git ']'
15:09:10++ python3 ./build.py release-src
15:09:11Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
15:09:1115:09:11release-src-git:
15:09:11Releasing openmicroscopy-5.6.3-578-b8f107afdf-ice36-b11
15:09:12 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-578-b8f107afdf-ice36-b11.zip
15:09:12 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-578-b8f107afdf-ice36-b11-base.zip
15:09:1415:09:14BUILD SUCCESSFUL
15:09:14Total time: 3 seconds
15:09:14++ echo BUILD_NUMBER=11
15:09:14++ echo OMERO_BRANCH=merge_ci
15:09:14++ git_info
15:09:14+++ git rev-parse HEAD
15:09:14++ HEAD=b8f107afdf4da0ee6f9f01b199024c3d20f6af28
15:09:14++ git log --max-count=1 b8f107afdf4da0ee6f9f01b199024c3d20f6af28
15:09:14++ env
15:09:14++ sort
15:09:14Archiving artifacts
15:09:30Finished: SUCCESS
