01:20:09Started by upstream project "Trigger" build number 2001:20:09originally caused by:
01:20:09 Started by timer
01:20:09Running as SYSTEM
01:20:09Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
01:20:09The recommended git tool is: NONE
01:20:09No credentials specified
01:20:09 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10
01:20:09Fetching changes from the remote Git repository
01:20:09 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
01:20:09Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git01:20:09 > git --version # timeout=10
01:20:09 > git --version # 'git version 2.52.0'
01:20:09 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
01:20:13 > git rev-parse origin/merge_ci^{commit} # timeout=10
01:20:13Checking out Revision c9427e48f4b852d477043cdff1cdc9055f388141 (origin/merge_ci)
01:20:13 > git config core.sparsecheckout # timeout=10
01:20:13 > git checkout -f c9427e48f4b852d477043cdff1cdc9055f388141 # timeout=10
01:20:17Commit message: "Add version.properties to etc/omero.properties"
01:20:17 > git rev-list --no-walk 8a224c870a775c3f5ae19126f391365102cf6cd2 # timeout=10
01:20:17Cleaning workspace
01:20:17 > git rev-parse --verify HEAD # timeout=10
01:20:17Resetting working tree
01:20:17 > git reset --hard # timeout=10
01:20:17 > git clean -fdx # timeout=10
01:20:54Copied 6 artifacts from "OMERO-python-superbuild-build" build number 1101:20:54[OMERO-build] $ /bin/bash -xe /tmp/jenkins9260627139232913963.sh
01:20:54+ mv omero-scripts/dist/omero_scripts-5.10.1.dev0.tar.gz .
01:20:54+ cd src
01:20:54+ export OMERO_BRANCH=merge_ci
01:20:54+ OMERO_BRANCH=merge_ci
01:20:54+ OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
01:20:54+ rm -rf /home/omero/workspace/OMERO-build/omero-virtualenv
01:21:29+ source /home/omero/settings.env
01:21:29++ OMERO_DB_HOST=pg
01:21:29++ OMERO_DB_USER=postgres
01:21:29++ OMERO_DB_PASS=
01:21:29++ OMERO_ROOT_PASS=omero
01:21:29++ OMERO_DATA_DIR=/OMERO
01:21:29++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
01:21:29+ python3.11 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
01:21:49+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl01:21:50Collecting zeroc-ice==3.6.5
01:21:50 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
01:21:53 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 11.4 MB/s eta 0:00:00
01:21:53Installing collected packages: zeroc-ice
01:21:57Successfully installed zeroc-ice-3.6.5
01:21:5701:21:57[notice] A new release of pip available: 22.3.1 -> 26.1.2
01:21:57[notice] To update, run: python3.11 -m pip install --upgrade pip
01:21:57+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U 'setuptools<66' omero-py
01:21:58Requirement already satisfied: setuptools<66 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (65.5.1)
01:21:58Collecting setuptools<66
01:21:58 Using cached setuptools-65.7.0-py3-none-any.whl (1.2 MB)
01:21:58Collecting omero-py
01:21:58 Using cached omero_py-5.22.1-py3-none-any.whl (2.8 MB)
01:21:59Collecting appdirs
01:21:59 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
01:21:59Collecting future
01:21:59 Using cached future-1.0.0-py3-none-any.whl (491 kB)
01:21:59Collecting numpy<3,>=2
01:21:59 Using cached numpy-2.4.6-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB)
01:22:00Collecting Pillow>=10.0.0
01:22:00 Using cached pillow-12.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (6.9 MB)
01:22:00Collecting PyYAML
01:22:00 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB)
01:22:00Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (from omero-py) (3.6.5)
01:22:01Collecting requests
01:22:01 Using cached requests-2.34.2-py3-none-any.whl (73 kB)
01:22:01Collecting portalocker
01:22:01 Using cached portalocker-3.2.0-py3-none-any.whl (22 kB)
01:22:01Collecting charset_normalizer<4,>=2
01:22:01 Using cached charset_normalizer-3.4.9-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (221 kB)
01:22:02Collecting idna<4,>=2.5
01:22:02 Using cached idna-3.18-py3-none-any.whl (65 kB)
01:22:02Collecting urllib3<3,>=1.26
01:22:02 Using cached urllib3-2.7.0-py3-none-any.whl (131 kB)
01:22:02Collecting certifi>=2023.5.7
01:22:02 Using cached certifi-2026.6.17-py3-none-any.whl (133 kB)
01:22:02Installing collected packages: appdirs, urllib3, setuptools, PyYAML, portalocker, Pillow, numpy, idna, future, charset_normalizer, certifi, requests, omero-py
01:22:03 Attempting uninstall: setuptools
01:22:03 Found existing installation: setuptools 65.5.1
01:22:04 Uninstalling setuptools-65.5.1:
01:22:04 Successfully uninstalled setuptools-65.5.1
01:22:51Successfully installed Pillow-12.3.0 PyYAML-6.0.3 appdirs-1.4.4 certifi-2026.6.17 charset_normalizer-3.4.9 future-1.0.0 idna-3.18 numpy-2.4.6 omero-py-5.22.1 portalocker-3.2.0 requests-2.34.2 setuptools-65.7.0 urllib3-2.7.0
01:22:5101:22:51[notice] A new release of pip available: 22.3.1 -> 26.1.2
01:22:51[notice] To update, run: python3.11 -m pip install --upgrade pip
01:22:51+ source /home/omero/workspace/OMERO-build/omero-virtualenv/bin/activate
01:22:51++ deactivate nondestructive
01:22:51++ '[' -n '' ']'
01:22:51++ '[' -n '' ']'
01:22:51++ hash -r
01:22:51++ '[' -n '' ']'
01:22:51++ unset VIRTUAL_ENV
01:22:51++ unset VIRTUAL_ENV_PROMPT
01:22:51++ '[' '!' nondestructive = nondestructive ']'
01:22:51++ VIRTUAL_ENV=/home/omero/workspace/OMERO-build/omero-virtualenv
01:22:51++ export VIRTUAL_ENV
01:22:51++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:22:51++ PATH=/home/omero/workspace/OMERO-build/omero-virtualenv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:22:51++ export PATH
01:22:51++ '[' -n '' ']'
01:22:51++ '[' -z '' ']'
01:22:51++ _OLD_VIRTUAL_PS1=
01:22:51++ PS1='(omero-virtualenv) '
01:22:51++ export PS1
01:22:51++ VIRTUAL_ENV_PROMPT='(omero-virtualenv) '
01:22:51++ export VIRTUAL_ENV_PROMPT
01:22:51++ hash -r
01:22:51+ source docs/hudson/OMERO.sh
01:22:51++ set -e
01:22:51++ set -u
01:22:51++ set -x
01:22:51++ source docs/hudson/functions.sh
01:22:51++ echo Building merge_ci
01:22:51Building merge_ci
01:22:51++ python3 ./build.py build-dev release-all
01:22:51Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
01:22:5201:22:52check-ivy:
01:22:52Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
01:22:52Created dir: /home/omero/workspace/OMERO-build/src/target
01:22:53:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
01:22:53:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:22:5401:22:54build-scons:
01:22:54Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
01:22:56No sub-builds to iterate on
01:22:56Entering /home/omero/workspace/OMERO-build/src/components/tools...
01:22:5601:22:56buildlist:
01:22:56:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
01:22:56:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:22:5701:22:57clean:
01:22:57Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
01:22:57Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
01:22:5801:22:58python-clean:
01:22:58WARNING: '' not a valid package name; please use only .-separated package names in setup.py
01:22:58/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-627-c9427e48f4-ice36-b12') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
01:22:58 warnings.warn(
01:22:58running clean
01:22:58Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
01:22:58Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
01:22:5801:22:58python-clean:
01:22:58WARNING: '' not a valid package name; please use only .-separated package names in setup.py
01:22:58/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-627-c9427e48f4-ice36-b12') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
01:22:58 warnings.warn(
01:22:59running clean
01:22:59Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
01:22:59Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
01:22:59Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
01:22:59Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
01:23:0001:23:00python-clean:
01:23:00WARNING: '' not a valid package name; please use only .-separated package names in setup.py
01:23:00/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-627-c9427e48f4-ice36-b12') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
01:23:00 warnings.warn(
01:23:00running clean
01:23:00Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
01:23:00Deleting directory /home/omero/workspace/OMERO-build/src/target
01:23:0101:23:01build-scons:
01:23:01Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
01:23:0301:23:03build:
01:23:03No sub-builds to iterate on
01:23:03Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
01:23:03Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
01:23:03Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
01:23:04Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
01:23:0401:23:04tools-init:
01:23:04no-op
01:23:0401:23:04retrieve:
01:23:04:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
01:23:04:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:24:2701:24:27prepare:
01:24:27Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
01:24:27Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
01:24:27Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
01:24:27Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
01:24:27Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
01:24:27Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
01:24:27Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
01:24:27Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
01:24:27Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
01:24:27Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
01:24:27Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
01:24:27Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
01:24:27Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
01:24:27Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
01:24:27Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
01:24:2701:24:27pre-compile:
01:24:27Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
01:24:29Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
01:24:37Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
01:24:41Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
01:24:41Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
01:24:4301:24:43compile:
01:24:43no-op
01:24:4401:24:44package:
01:24:44Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
01:24:4701:24:47install:
01:24:47:: delivering :: omero#omero_client;working@477d91c674a5 :: 5.6.3-627-c9427e48f4-ice36-b12 :: integration :: Sat Jul 18 01:23:03 UTC 2026
01:24:47 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
01:24:47:: publishing :: omero#omero_client
01:24:47 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-627-c9427e48f4-ice36-b12/omero_client-5.6.3-627-c9427e48f4-ice36-b12.jar
01:24:47 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-627-c9427e48f4-ice36-b12/omero_client-5.6.3-627-c9427e48f4-ice36-b12.xml
01:24:48Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
01:24:48Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
01:24:4901:24:49retrieve:
01:24:49:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
01:24:49:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:24:49Entering /home/omero/workspace/OMERO-build/src/components/tools...
01:24:4901:24:49dist:
01:24:49Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
01:24:49Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
01:24:49Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
01:24:49Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.10.1.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
01:24:50Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
01:24:50Copying 29 files to /home/omero/workspace/OMERO-build/src/dist
01:24:51Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
01:24:51Entering /home/omero/workspace/OMERO-build/src/components/tests...
01:24:51Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
01:24:5201:24:52copy-licenses:
01:24:52Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
01:24:52Created dir: /home/omero/workspace/OMERO-build/src/dist/share
01:24:52Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
01:24:5301:24:53copy-history:
01:24:53Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
01:24:5301:24:53copy-etc:
01:24:53Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
01:24:53Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
01:24:5301:24:53copy-sql:
01:24:53Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
01:25:0601:25:06copy-server:
01:25:06 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.1.9 won
01:25:1001:25:10copy-client:
01:25:10Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
01:25:14 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.1.9 won
01:25:1801:25:18update-version:
01:25:18Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
01:25:1801:25:18create-workdirs:
01:25:18Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
01:25:18Created dir: /home/omero/workspace/OMERO-build/src/dist/var
01:25:18Created dir: /home/omero/workspace/OMERO-build/src/dist/var/tmp
01:25:1801:25:18copy-luts:
01:25:18Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
01:25:18Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
01:25:1801:25:18test-compile:
01:25:18:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:25:19Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
01:25:19Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
01:25:19Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
01:25:19Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
01:25:20Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
01:25:20Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
01:25:20Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
01:25:2101:25:21testng-init:
01:25:21:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
01:25:21:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:25:2901:25:29,018 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.16
01:25:2901:25:29,021 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7e1b750e - No custom configurators were discovered as a service.
01:25:2901:25:29,021 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7e1b750e - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
01:25:2901:25:29,025 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7e1b750e - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
01:25:2901:25:29,028 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
01:25:2901:25:29,030 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
01:25:2901:25:29,030 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7e1b750e - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 5 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
01:25:2901:25:29,030 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7e1b750e - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
01:25:2901:25:29,033 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7e1b750e - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
01:25:2901:25:29,035 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
01:25:2901:25:29,036 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
01:25:2901:25:29,038 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@5f385ee9 - Resource [logback.xml] occurs multiple times on the classpath.
01:25:2901:25:29,038 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@5f385ee9 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
01:25:2901:25:29,038 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@5f385ee9 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
01:25:2901:25:29,268 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
01:25:2901:25:29,268 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
01:25:2901:25:29,290 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
01:25:2901:25:29,292 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@39ad5a7d - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
01:25:2901:25:29,292 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@39ad5a7d - Please move "immediateFlush" property into the enclosing appender.
01:25:2901:25:29,365 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@39ad5a7d - Setting the "immediateFlush" property of the enclosing appender to true
01:25:2901:25:29,366 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
01:25:2901:25:29,367 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
01:25:2901:25:29,367 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
01:25:2901:25:29,367 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
01:25:2901:25:29,367 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
01:25:2901:25:29,367 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
01:25:2901:25:29,368 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1492c9d - End of configuration.
01:25:2901:25:29,370 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@24df8abf - Registering current configuration as safe fallback point
01:25:2901:25:29,371 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7e1b750e - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 338 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
01:25:2901:25:29lifecycle.test-compile:
01:25:29Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
01:25:29Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
01:25:29warning: [options] bootstrap class path not set in conjunction with -source 8
01:25:29warning: [options] source value 8 is obsolete and will be removed in a future release
01:25:29warning: [options] target value 8 is obsolete and will be removed in a future release
01:25:29warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
01:25:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:25:31import omero.grid.RawAccessRequest;
01:25:31 ^
01:25:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:25:32import omero.grid.RawAccessRequest;
01:25:32 ^
01:25:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:25:32import omero.grid.RawAccessRequest;
01:25:32 ^
01:25:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
01:25:32import omero.model.ImportJob;
01:25:32 ^
01:25:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
01:25:32import omero.model.ImportJobI;
01:25:32 ^
01:25:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated
01:25:33 IObject link = (IObject) linkClass.newInstance();
01:25:33 ^
01:25:33 where T is a type-variable:
01:25:33 T extends Object declared in class Class
01:25:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
01:25:33 T copy = (T) obj.getClass().newInstance();
01:25:33 ^
01:25:33 where T is a type-variable:
01:25:33 T extends Object declared in class Class
01:25:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:25:33 RawAccessRequest raw = new RawAccessRequest();
01:25:33 ^
01:25:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:25:33 RawAccessRequest raw = new RawAccessRequest();
01:25:33 ^
01:25:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
01:25:33 raw.repoUuid = legacy.root().getHash().getValue();
01:25:33 ^
01:25:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
01:25:33 raw.command = "rm";
01:25:33 ^
01:25:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
01:25:33 raw.args = Arrays.asList(path);
01:25:33 ^
01:25:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
01:25:33 final IObject link = linkClass.newInstance();
01:25:33 ^
01:25:33 where T is a type-variable:
01:25:33 T extends Object declared in class Class
01:25:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
01:25:33 originalLink.setChild(annotationClass.newInstance());
01:25:33 ^
01:25:33 where T is a type-variable:
01:25:33 T extends Object declared in class Class
01:25:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
01:25:34 RoiResult r = svc.findByImage(id, new RoiOptions());
01:25:34 ^
01:25:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:25:34 final RawAccessRequest request = new RawAccessRequest();
01:25:34 ^
01:25:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:25:34 final RawAccessRequest request = new RawAccessRequest();
01:25:34 ^
01:25:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
01:25:34 request.repoUuid = repo.root().getHash().getValue();
01:25:34 ^
01:25:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
01:25:34 request.command = "exists";
01:25:34 ^
01:25:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
01:25:34 request.args = Collections.singletonList(dirPath);
01:25:34 ^
01:25:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:25:34 final RawAccessRequest request = new RawAccessRequest();
01:25:34 ^
01:25:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:25:34 final RawAccessRequest request = new RawAccessRequest();
01:25:34 ^
01:25:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
01:25:34 request.repoUuid = repo.root().getHash().getValue();
01:25:34 ^
01:25:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
01:25:34 request.command = "exists";
01:25:34 ^
01:25:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
01:25:34 request.args = Collections.singletonList(dirName);
01:25:34 ^
01:25:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
01:25:34 final ImportJob importJob = new ImportJobI();
01:25:34 ^
01:25:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
01:25:34 final ImportJob importJob = new ImportJobI();
01:25:34 ^
01:25:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
01:25:34 importJob.setImageName(omero.rtypes.rstring(name));
01:25:34 ^
01:25:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
01:25:34 importJob.setImageDescription(omero.rtypes.rstring(desc));
01:25:34 ^
01:25:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
01:25:34 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
01:25:34 ^
01:25:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
01:25:34 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
01:25:34 ^
01:25:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
01:25:34 final String savedName = sent.getImageName().getValue().toString();
01:25:34 ^
01:25:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
01:25:34 final String savedDesc = sent.getImageDescription().getValue().toString();
01:25:34 ^
01:25:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
01:25:34 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
01:25:34 ^
01:25:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
01:25:34 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
01:25:34 ^
01:25:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
01:25:34 final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
01:25:34 ^
01:25:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
01:25:34 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
01:25:34 ^
01:25:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
01:25:35 RoiResult r = svc.findByImage(image.getId().getValue(),
01:25:35 ^
01:25:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:25:35 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
01:25:35 ^
01:25:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:25:35 l = svc.getRoiMeasurements(image.getId().getValue(), options);
01:25:35 ^
01:25:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:25:35 l = svc.getRoiMeasurements(image.getId().getValue(), options);
01:25:35 ^
01:25:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:25:35 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
01:25:35 ^
01:25:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
01:25:35 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
01:25:35 ^
01:25:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:25:35 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
01:25:35 ^
01:25:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
01:25:35 table = svc.getTable(f.getId().getValue());
01:25:35 ^
01:25:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
01:25:35 RoiResult r = svc.findByImage(image.getId().getValue(),
01:25:35 ^
01:25:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
01:25:35 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
01:25:35 ^
01:25:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
01:25:35 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
01:25:35 ^
01:25:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
01:25:35 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
01:25:35 ^
01:25:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
01:25:35 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
01:25:35 ^
01:25:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:25:35 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
01:25:35 ^
01:25:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:25:35 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
01:25:35 ^
01:25:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:25:35 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
01:25:35 ^
01:25:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:25:35 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
01:25:35 ^
01:25:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Long(long) in Long has been deprecated and marked for removal
01:25:35 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
01:25:35 ^
01:25:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:25:35 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
01:25:35 ^
01:25:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:25:35 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
01:25:35 ^
01:25:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:25:35 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
01:25:35 ^
01:25:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:25:35 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
01:25:35 ^
01:25:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:25:35 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
01:25:35 ^
01:25:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:25:35 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
01:25:35 ^
01:25:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:25:35 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
01:25:35 ^
01:25:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:25:35 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
01:25:35 ^
01:25:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:25:35 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
01:25:35 ^
01:25:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:25:35 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
01:25:35 ^
01:25:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:25:35 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
01:25:35 ^
01:25:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:25:35 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
01:25:35 ^
01:25:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
01:25:35 svc.getShapeStatsRestricted(
01:25:35 ^
01:25:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
01:25:35 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
01:25:35 ^
01:25:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
01:25:35 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
01:25:35 ^
01:25:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
01:25:35 request.typesToIgnore = Collections.singletonList("TagAnnotation");
01:25:35 ^
01:25:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
01:25:35 request.typesToIgnore = Collections.singletonList("IAnnotationLink");
01:25:35 ^
01:25:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
01:25:35 request.typesToIgnore = Collections.singletonList("Annotation");
01:25:35 ^
01:25:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
01:25:35 request.typesToIgnore = Collections.singletonList("Annotation");
01:25:35 ^
01:25:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
01:25:35 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
01:25:35 ^
01:25:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
01:25:35 p2.setRelatedTo(p1);
01:25:35 ^
01:25:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
01:25:35 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
01:25:35 ^
01:25:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
01:25:35 pixels1.setRelatedTo(pixels2);
01:25:35 ^
01:25:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
01:25:35 Pixels pixels = pixels1.getRelatedTo();
01:25:35 ^
01:25:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
01:25:35 Assert.assertNull(pixels1.getRelatedTo());
01:25:35 ^
01:25:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
01:25:35 pixels1.setRelatedTo(pixels2);
01:25:35 ^
01:25:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
01:25:35 Pixels pixels = pixels1.getRelatedTo();
01:25:35 ^
01:25:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
01:25:35 Assert.assertNull(pixels1.getRelatedTo());
01:25:35 ^
01:25:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:25:35 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
01:25:35 ^
01:25:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:25:35 l = svc.getRoiMeasurements(image.getId().getValue(), options);
01:25:35 ^
01:25:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:25:35 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
01:25:35 ^
01:25:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:25:35 l = svc.getRoiMeasurements(image.getId().getValue(), options);
01:25:35 ^
01:25:36Note: Some input files use unchecked or unsafe operations.
01:25:36Note: Recompile with -Xlint:unchecked for details.
01:25:3691 warnings
01:25:36Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_1733359392.tmp
01:25:36Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar
01:25:36:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:25:36:: delivering :: omero#OmeroJava-test;working@477d91c674a5 :: 5.6.3-627-c9427e48f4-ice36-b12 :: integration :: Sat Jul 18 01:25:20 UTC 2026
01:25:36 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml
01:25:36:: publishing :: omero#OmeroJava-test
01:25:36 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-627-c9427e48f4-ice36-b12.jar
01:25:36 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-627-c9427e48f4-ice36-b12.xml
01:25:3601:25:36build-eclipse:
01:25:36No sub-builds to iterate on
01:25:37Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
01:25:3701:25:37retrieve:
01:25:37:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
01:25:37:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:25:4201:25:42prepare:
01:25:42Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
01:25:4501:25:45release-clients:
01:25:45Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-627-c9427e48f4-ice36-b12.zip
01:25:5101:25:51release-zip:
01:25:51Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-627-c9427e48f4-ice36-b12.zip
01:26:0301:26:03BUILD SUCCESSFUL
01:26:03Total time: 3 minutes 11 seconds
01:26:03++ '[' -d .git ']'
01:26:03++ python3 ./build.py release-src
01:26:03Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
01:26:0401:26:04release-src-git:
01:26:04Releasing openmicroscopy-5.6.3-627-c9427e48f4-ice36-b12
01:26:06 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-627-c9427e48f4-ice36-b12.zip
01:26:06 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-627-c9427e48f4-ice36-b12-base.zip
01:26:0701:26:07BUILD SUCCESSFUL
01:26:07Total time: 4 seconds
01:26:07++ echo BUILD_NUMBER=12
01:26:07++ echo OMERO_BRANCH=merge_ci
01:26:07++ git_info
01:26:07+++ git rev-parse HEAD
01:26:07++ HEAD=c9427e48f4b852d477043cdff1cdc9055f388141
01:26:07++ git log --max-count=1 c9427e48f4b852d477043cdff1cdc9055f388141
01:26:07++ env
01:26:07++ sort
01:26:07Archiving artifacts
01:26:24Finished: SUCCESS
