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00:35:32 Started by upstream project "Trigger" build number 31
00:35:32 originally caused by:
00:35:32  Started by timer
00:35:32 Running as SYSTEM
00:35:32 Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
00:35:32 The recommended git tool is: NONE
00:35:32 No credentials specified
00:35:32  > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10
00:35:32 Fetching changes from the remote Git repository
00:35:32  > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
00:35:32 Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git
00:35:32  > git --version # timeout=10
00:35:32  > git --version # 'git version 2.47.3'
00:35:32  > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
00:35:32  > git rev-parse origin/merge_ci^{commit} # timeout=10
00:35:32 Checking out Revision 99f4f59171be053cab43332e8444e2aa58380413 (origin/merge_ci)
00:35:32  > git config core.sparsecheckout # timeout=10
00:35:32  > git checkout -f 99f4f59171be053cab43332e8444e2aa58380413 # timeout=10
00:35:33 Commit message: "Add version.properties to etc/omero.properties"
00:35:33  > git rev-list --no-walk b8f107afdf4da0ee6f9f01b199024c3d20f6af28 # timeout=10
00:35:33 Cleaning workspace
00:35:33  > git rev-parse --verify HEAD # timeout=10
00:35:33 Resetting working tree
00:35:33  > git reset --hard # timeout=10
00:35:33  > git clean -fdx # timeout=10
00:35:33 Copied 6 artifacts from "OMERO-python-superbuild-build" build number 12
00:35:33 [OMERO-build] $ /bin/bash -xe /tmp/jenkins7945424151621481812.sh
00:35:33 + mv omero-scripts/dist/omero_scripts-5.9.2.dev0.tar.gz .
00:35:33 + cd src
00:35:33 + export OMERO_BRANCH=merge_ci
00:35:33 + OMERO_BRANCH=merge_ci
00:35:33 + OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
00:35:33 + rm -rf /home/omero/workspace/OMERO-build/omero-virtualenv
00:35:33 + source /home/omero/settings.env
00:35:33 ++ OMERO_DB_HOST=pg
00:35:33 ++ OMERO_DB_USER=postgres
00:35:33 ++ OMERO_DB_PASS=
00:35:33 ++ OMERO_ROOT_PASS=omero
00:35:33 ++ OMERO_DATA_DIR=/OMERO
00:35:33 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
00:35:33 + python3.11 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
00:35:37 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl
00:35:37 Collecting zeroc-ice==3.6.5
00:35:38   Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
00:35:39      ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 19.7 MB/s eta 0:00:00
00:35:39 Installing collected packages: zeroc-ice
00:35:40 Successfully installed zeroc-ice-3.6.5
00:35:40 
00:35:40 [notice] A new release of pip available: 22.3.1 -> 25.3
00:35:40 [notice] To update, run: python3.11 -m pip install --upgrade pip
00:35:40 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U 'setuptools<66' omero-py
00:35:41 Requirement already satisfied: setuptools<66 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (65.5.1)
00:35:41 Collecting setuptools<66
00:35:41   Using cached setuptools-65.7.0-py3-none-any.whl (1.2 MB)
00:35:41 Collecting omero-py
00:35:41   Using cached omero_py-5.21.3-py3-none-any.whl (2.8 MB)
00:35:41 Collecting appdirs
00:35:41   Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
00:35:41 Collecting future
00:35:41   Using cached future-1.0.0-py3-none-any.whl (491 kB)
00:35:42 Collecting numpy<3
00:35:42   Using cached numpy-2.4.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.6 MB)
00:35:42 Collecting Pillow>=10.0.0
00:35:42   Using cached pillow-12.1.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (7.0 MB)
00:35:43 Collecting PyYAML
00:35:43   Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB)
00:35:43 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (from omero-py) (3.6.5)
00:35:43 Collecting requests
00:35:43   Using cached requests-2.32.5-py3-none-any.whl (64 kB)
00:35:43 Collecting portalocker
00:35:43   Using cached portalocker-3.2.0-py3-none-any.whl (22 kB)
00:35:43 Collecting charset_normalizer<4,>=2
00:35:43   Using cached charset_normalizer-3.4.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (151 kB)
00:35:43 Collecting idna<4,>=2.5
00:35:43   Using cached idna-3.11-py3-none-any.whl (71 kB)
00:35:43 Collecting urllib3<3,>=1.21.1
00:35:44   Downloading urllib3-2.6.3-py3-none-any.whl (131 kB)
00:35:44      ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 131.6/131.6 kB 4.8 MB/s eta 0:00:00
00:35:44 Collecting certifi>=2017.4.17
00:35:44   Using cached certifi-2026.1.4-py3-none-any.whl (152 kB)
00:35:45 Installing collected packages: appdirs, urllib3, setuptools, PyYAML, portalocker, Pillow, numpy, idna, future, charset_normalizer, certifi, requests, omero-py
00:35:45   Attempting uninstall: setuptools
00:35:45     Found existing installation: setuptools 65.5.1
00:35:45     Uninstalling setuptools-65.5.1:
00:35:45       Successfully uninstalled setuptools-65.5.1
00:35:50 Successfully installed Pillow-12.1.0 PyYAML-6.0.3 appdirs-1.4.4 certifi-2026.1.4 charset_normalizer-3.4.4 future-1.0.0 idna-3.11 numpy-2.4.0 omero-py-5.21.3 portalocker-3.2.0 requests-2.32.5 setuptools-65.7.0 urllib3-2.6.3
00:35:50 
00:35:50 [notice] A new release of pip available: 22.3.1 -> 25.3
00:35:50 [notice] To update, run: python3.11 -m pip install --upgrade pip
00:35:50 + source /home/omero/workspace/OMERO-build/omero-virtualenv/bin/activate
00:35:50 ++ deactivate nondestructive
00:35:50 ++ '[' -n '' ']'
00:35:50 ++ '[' -n '' ']'
00:35:50 ++ hash -r
00:35:50 ++ '[' -n '' ']'
00:35:50 ++ unset VIRTUAL_ENV
00:35:50 ++ unset VIRTUAL_ENV_PROMPT
00:35:50 ++ '[' '!' nondestructive = nondestructive ']'
00:35:50 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-build/omero-virtualenv
00:35:50 ++ export VIRTUAL_ENV
00:35:50 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:35:50 ++ PATH=/home/omero/workspace/OMERO-build/omero-virtualenv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:35:50 ++ export PATH
00:35:50 ++ '[' -n '' ']'
00:35:50 ++ '[' -z '' ']'
00:35:50 ++ _OLD_VIRTUAL_PS1=
00:35:50 ++ PS1='(omero-virtualenv) '
00:35:50 ++ export PS1
00:35:50 ++ VIRTUAL_ENV_PROMPT='(omero-virtualenv) '
00:35:50 ++ export VIRTUAL_ENV_PROMPT
00:35:50 ++ hash -r
00:35:50 + source docs/hudson/OMERO.sh
00:35:50 ++ set -e
00:35:50 ++ set -u
00:35:50 ++ set -x
00:35:50 ++ source docs/hudson/functions.sh
00:35:50 ++ echo Building merge_ci
00:35:50 Building merge_ci
00:35:50 ++ python3 ./build.py build-dev release-all
00:35:50 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
00:35:51 
00:35:51 check-ivy:
00:35:51 Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
00:35:51 Created dir: /home/omero/workspace/OMERO-build/src/target
00:35:51 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:35:51 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:35:52 
00:35:52 build-scons:
00:35:52 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
00:35:52 No sub-builds to iterate on
00:35:52 Entering /home/omero/workspace/OMERO-build/src/components/tools...
00:35:52 
00:35:52 buildlist:
00:35:52 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:35:52 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:35:52 
00:35:52 clean:
00:35:52 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:35:52 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:35:53 
00:35:53 python-clean:
00:35:53 WARNING: '' not a valid package name; please use only .-separated package names in setup.py
00:35:53 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-578-99f4f59171-ice36-b12') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
00:35:53   warnings.warn(
00:35:53 running clean
00:35:53 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
00:35:53 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
00:35:53 
00:35:53 python-clean:
00:35:53 WARNING: '' not a valid package name; please use only .-separated package names in setup.py
00:35:53 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-578-99f4f59171-ice36-b12') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
00:35:53   warnings.warn(
00:35:53 running clean
00:35:53 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
00:35:53 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
00:35:53 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:35:53 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:35:53 
00:35:53 python-clean:
00:35:53 WARNING: '' not a valid package name; please use only .-separated package names in setup.py
00:35:53 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-578-99f4f59171-ice36-b12') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
00:35:53   warnings.warn(
00:35:53 running clean
00:35:53 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
00:35:53 Deleting directory /home/omero/workspace/OMERO-build/src/target
00:35:53 
00:35:53 build-scons:
00:35:53 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
00:35:53 
00:35:53 build:
00:35:53 No sub-builds to iterate on
00:35:53 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:35:54 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:35:54 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
00:35:54 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
00:35:54 
00:35:54 tools-init:
00:35:54 no-op
00:35:54 
00:35:54 retrieve:
00:35:54 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:35:54 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:35:54 WARNING: An illegal reflective access operation has occurred
00:35:54 WARNING: Illegal reflective access by org.apache.ivy.util.url.IvyAuthenticator (file:/home/omero/workspace/OMERO-build/src/lib/repository/ivy-2.4.0.jar) to field java.net.Authenticator.theAuthenticator
00:35:54 WARNING: Please consider reporting this to the maintainers of org.apache.ivy.util.url.IvyAuthenticator
00:35:54 WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
00:35:54 WARNING: All illegal access operations will be denied in a future release
00:36:35 
00:36:35 prepare:
00:36:35 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
00:36:35 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
00:36:35 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
00:36:35 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:36:35 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:36:35 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
00:36:35 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
00:36:35 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:36:35 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:36:35 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:36:35 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:36:35 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:36:35 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:36:35 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:36:35 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:36:35 
00:36:35 pre-compile:
00:36:35 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:36:35 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:36:35 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:36:35 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:36:35 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:36:35 
00:36:35 compile:
00:36:35 no-op
00:36:35 
00:36:35 package:
00:36:35 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
00:36:36 
00:36:36 install:
00:36:36 :: delivering :: omero#omero_client;working@5b72e444b6b5 :: 5.6.3-578-99f4f59171-ice36-b12 :: integration :: Thu Jan 08 00:35:54 UTC 2026
00:36:36 	delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
00:36:36 :: publishing :: omero#omero_client
00:36:36 	published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-578-99f4f59171-ice36-b12/omero_client-5.6.3-578-99f4f59171-ice36-b12.jar
00:36:36 	published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-578-99f4f59171-ice36-b12/omero_client-5.6.3-578-99f4f59171-ice36-b12.xml
00:36:36 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:36:36 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:36:36 
00:36:36 retrieve:
00:36:36 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:36:36 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:36:37 Entering /home/omero/workspace/OMERO-build/src/components/tools...
00:36:37 
00:36:37 dist:
00:36:37 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
00:36:37 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
00:36:37 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
00:36:37 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.9.2.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
00:36:37 Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
00:36:37 Copying 29 files to /home/omero/workspace/OMERO-build/src/dist
00:36:37 Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
00:36:37 Entering /home/omero/workspace/OMERO-build/src/components/tests...
00:36:37 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
00:36:37 
00:36:37 copy-licenses:
00:36:37 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
00:36:37 Created dir: /home/omero/workspace/OMERO-build/src/dist/share
00:36:37 Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
00:36:37 
00:36:37 copy-history:
00:36:37 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
00:36:37 
00:36:37 copy-etc:
00:36:37 Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
00:36:37 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
00:36:37 
00:36:37 copy-sql:
00:36:37 Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
00:36:42 
00:36:42 copy-server:
00:36:42 	conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.1.9 won
00:36:43 
00:36:43 copy-client:
00:36:43 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
00:36:44 	conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.1.9 won
00:36:44 
00:36:44 update-version:
00:36:44 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
00:36:44 
00:36:44 create-workdirs:
00:36:44 Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
00:36:44 Created dir: /home/omero/workspace/OMERO-build/src/dist/var
00:36:44 Created dir: /home/omero/workspace/OMERO-build/src/dist/var/tmp
00:36:44 
00:36:44 copy-luts:
00:36:44 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
00:36:44 Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
00:36:44 
00:36:44 test-compile:
00:36:44 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:36:44 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
00:36:44 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:36:44 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:36:44 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:36:44 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:36:44 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
00:36:44 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
00:36:44 
00:36:44 testng-init:
00:36:44 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:36:44 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:36:47 00:36:47,215 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.16
00:36:47 00:36:47,217 |-INFO in ch.qos.logback.classic.util.ContextInitializer@12550aaf - No custom configurators were discovered as a service.
00:36:47 00:36:47,217 |-INFO in ch.qos.logback.classic.util.ContextInitializer@12550aaf - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
00:36:47 00:36:47,221 |-INFO in ch.qos.logback.classic.util.ContextInitializer@12550aaf - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
00:36:47 00:36:47,221 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
00:36:47 00:36:47,221 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
00:36:47 00:36:47,222 |-INFO in ch.qos.logback.classic.util.ContextInitializer@12550aaf - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
00:36:47 00:36:47,222 |-INFO in ch.qos.logback.classic.util.ContextInitializer@12550aaf - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
00:36:47 00:36:47,224 |-INFO in ch.qos.logback.classic.util.ContextInitializer@12550aaf - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
00:36:47 00:36:47,224 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
00:36:47 00:36:47,224 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
00:36:47 00:36:47,225 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@784bb800 - Resource [logback.xml] occurs multiple times on the classpath.
00:36:47 00:36:47,225 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@784bb800 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
00:36:47 00:36:47,225 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@784bb800 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
00:36:47 00:36:47,422 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
00:36:47 00:36:47,422 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
00:36:47 00:36:47,441 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
00:36:47 00:36:47,443 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@2c27d6e5 - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
00:36:47 00:36:47,443 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@2c27d6e5 - Please move "immediateFlush" property into the enclosing appender.
00:36:47 00:36:47,502 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@2c27d6e5 - Setting the "immediateFlush" property of the enclosing appender to true
00:36:47 00:36:47,503 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
00:36:47 00:36:47,503 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
00:36:47 00:36:47,503 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
00:36:47 00:36:47,503 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
00:36:47 00:36:47,503 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
00:36:47 00:36:47,503 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
00:36:47 00:36:47,504 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@3eebbbf5 - End of configuration.
00:36:47 00:36:47,506 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@451cef5 - Registering current configuration as safe fallback point
00:36:47 00:36:47,506 |-INFO in ch.qos.logback.classic.util.ContextInitializer@12550aaf - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 282 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
00:36:47 
00:36:47 lifecycle.test-compile:
00:36:47 Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
00:36:47 Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
00:36:47 warning: [options] bootstrap class path not set in conjunction with -source 8
00:36:48 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:36:48 import omero.grid.RawAccessRequest;
00:36:48                  ^
00:36:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:36:49 import omero.grid.RawAccessRequest;
00:36:49                  ^
00:36:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:36:49 import omero.grid.RawAccessRequest;
00:36:49                  ^
00:36:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
00:36:49 import omero.model.ImportJob;
00:36:49                   ^
00:36:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
00:36:49 import omero.model.ImportJobI;
00:36:49                   ^
00:36:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated
00:36:49         IObject link = (IObject) linkClass.newInstance();
00:36:49                                           ^
00:36:49   where T is a type-variable:
00:36:49     T extends Object declared in class Class
00:36:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
00:36:50         T copy = (T) obj.getClass().newInstance();
00:36:50                                    ^
00:36:50   where T is a type-variable:
00:36:50     T extends Object declared in class Class
00:36:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:36:50         RawAccessRequest raw = new RawAccessRequest();
00:36:50         ^
00:36:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:36:50         RawAccessRequest raw = new RawAccessRequest();
00:36:50                                    ^
00:36:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
00:36:50         raw.repoUuid = legacy.root().getHash().getValue();
00:36:50            ^
00:36:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
00:36:50         raw.command = "rm";
00:36:50            ^
00:36:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
00:36:50         raw.args = Arrays.asList(path);
00:36:50            ^
00:36:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
00:36:50         final IObject link = linkClass.newInstance();
00:36:50                                       ^
00:36:50   where T is a type-variable:
00:36:50     T extends Object declared in class Class
00:36:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
00:36:50             originalLink.setChild(annotationClass.newInstance());
00:36:50                                                  ^
00:36:50   where T is a type-variable:
00:36:50     T extends Object declared in class Class
00:36:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
00:36:50         RoiResult r = svc.findByImage(id, new RoiOptions());
00:36:50                          ^
00:36:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:36:51         final RawAccessRequest request = new RawAccessRequest();
00:36:51               ^
00:36:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:36:51         final RawAccessRequest request = new RawAccessRequest();
00:36:51                                              ^
00:36:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
00:36:51         request.repoUuid = repo.root().getHash().getValue();
00:36:51                ^
00:36:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
00:36:51         request.command = "exists";
00:36:51                ^
00:36:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
00:36:51         request.args = Collections.singletonList(dirPath);
00:36:51                ^
00:36:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:36:51         final RawAccessRequest request = new RawAccessRequest();
00:36:51               ^
00:36:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:36:51         final RawAccessRequest request = new RawAccessRequest();
00:36:51                                              ^
00:36:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
00:36:51         request.repoUuid = repo.root().getHash().getValue();
00:36:51                ^
00:36:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
00:36:51         request.command = "exists";
00:36:51                ^
00:36:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
00:36:51         request.args = Collections.singletonList(dirName);
00:36:51                ^
00:36:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
00:36:51         final ImportJob importJob = new ImportJobI();
00:36:51               ^
00:36:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
00:36:51         final ImportJob importJob = new ImportJobI();
00:36:51                                         ^
00:36:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
00:36:51         importJob.setImageName(omero.rtypes.rstring(name));
00:36:51                  ^
00:36:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
00:36:51         importJob.setImageDescription(omero.rtypes.rstring(desc));
00:36:51                  ^
00:36:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
00:36:51         ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
00:36:51         ^
00:36:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
00:36:51         ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
00:36:51                           ^
00:36:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
00:36:51         final String savedName = sent.getImageName().getValue().toString();
00:36:51                                      ^
00:36:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
00:36:51         final String savedDesc = sent.getImageDescription().getValue().toString();
00:36:51                                      ^
00:36:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
00:36:51         final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
00:36:51               ^
00:36:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
00:36:51         final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
00:36:51                                               ^
00:36:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
00:36:51         final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
00:36:51                                                        ^
00:36:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
00:36:51         final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
00:36:51                                                        ^
00:36:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
00:36:51         RoiResult r = svc.findByImage(image.getId().getValue(),
00:36:51                          ^
00:36:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:36:51         List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:36:51                                 ^
00:36:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:36:51         l = svc.getRoiMeasurements(image.getId().getValue(), options);
00:36:51                ^
00:36:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:36:51         l = svc.getRoiMeasurements(image.getId().getValue(), options);
00:36:51                ^
00:36:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:36:51         List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:36:51                                 ^
00:36:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
00:36:51         Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
00:36:51                                          ^
00:36:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:36:51         List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:36:51                                 ^
00:36:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
00:36:51         table = svc.getTable(f.getId().getValue());
00:36:51                    ^
00:36:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
00:36:51         RoiResult r = svc.findByImage(image.getId().getValue(),
00:36:51                          ^
00:36:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
00:36:51         r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
00:36:51                ^
00:36:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
00:36:51         r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
00:36:51                ^
00:36:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
00:36:51         r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
00:36:51                ^
00:36:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
00:36:51         r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
00:36:51                ^
00:36:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
00:36:51             null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
00:36:51                   ^
00:36:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
00:36:51             null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
00:36:51                                   ^
00:36:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
00:36:51             new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
00:36:51                                    ^
00:36:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
00:36:51             new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
00:36:51                                                    ^
00:36:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Long(long) in Long has been deprecated
00:36:51             Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
00:36:51                                       ^
00:36:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
00:36:51             Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
00:36:51                                                        ^
00:36:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
00:36:51             Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
00:36:51                                                                        ^
00:36:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
00:36:51         inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
00:36:51                                        ^
00:36:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
00:36:51         inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
00:36:51                                                         ^
00:36:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
00:36:51         inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
00:36:51                                        ^
00:36:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
00:36:51         inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
00:36:51                                                        ^
00:36:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
00:36:51         inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
00:36:51                                        ^
00:36:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
00:36:51         inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
00:36:51                                                        ^
00:36:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
00:36:51         inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
00:36:51                                        ^
00:36:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
00:36:51         inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
00:36:51                                                        ^
00:36:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
00:36:51         inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
00:36:51                                        ^
00:36:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
00:36:51         inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
00:36:51                                                        ^
00:36:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
00:36:51                 svc.getShapeStatsRestricted(
00:36:51                    ^
00:36:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
00:36:51         final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
00:36:51                                        ^
00:36:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:36:52         projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
00:36:52                                      ^
00:36:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
00:36:52         request.typesToIgnore = Collections.singletonList("TagAnnotation");
00:36:52                ^
00:36:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
00:36:52         request.typesToIgnore = Collections.singletonList("IAnnotationLink");
00:36:52                ^
00:36:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
00:36:52         request.typesToIgnore = Collections.singletonList("Annotation");
00:36:52                ^
00:36:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
00:36:52                     request.typesToIgnore = Collections.singletonList("Annotation");
00:36:52                            ^
00:36:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:36:52         projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
00:36:52                                      ^
00:36:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:36:52         p2.setRelatedTo(p1);
00:36:52           ^
00:36:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:36:52         Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
00:36:52                                           ^
00:36:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:36:52         pixels1.setRelatedTo(pixels2);
00:36:52                ^
00:36:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:36:52         Pixels pixels = pixels1.getRelatedTo();
00:36:52                                ^
00:36:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:36:52         Assert.assertNull(pixels1.getRelatedTo());
00:36:52                                  ^
00:36:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:36:52         pixels1.setRelatedTo(pixels2);
00:36:52                ^
00:36:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:36:52         Pixels pixels = pixels1.getRelatedTo();
00:36:52                                ^
00:36:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:36:52         Assert.assertNull(pixels1.getRelatedTo());
00:36:52                                  ^
00:36:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:36:52         List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:36:52                                 ^
00:36:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:36:52         l = svc.getRoiMeasurements(image.getId().getValue(), options);
00:36:52                ^
00:36:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:36:52         List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:36:52                                 ^
00:36:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:36:52         l = svc.getRoiMeasurements(image.getId().getValue(), options);
00:36:52                ^
00:36:52 Note: Some input files use unchecked or unsafe operations.
00:36:52 Note: Recompile with -Xlint:unchecked for details.
00:36:52 88 warnings
00:36:52 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_1263178972.tmp
00:36:52 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar
00:36:52 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:36:52 :: delivering :: omero#OmeroJava-test;working@5b72e444b6b5 :: 5.6.3-578-99f4f59171-ice36-b12 :: integration :: Thu Jan 08 00:36:44 UTC 2026
00:36:52 	delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml
00:36:52 :: publishing :: omero#OmeroJava-test
00:36:52 	published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-578-99f4f59171-ice36-b12.jar
00:36:52 	published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-578-99f4f59171-ice36-b12.xml
00:36:52 
00:36:52 build-eclipse:
00:36:52 No sub-builds to iterate on
00:36:52 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
00:36:52 
00:36:52 retrieve:
00:36:52 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:36:52 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:36:54 
00:36:54 prepare:
00:36:54 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
00:36:56 
00:36:56 release-clients:
00:36:56 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-578-99f4f59171-ice36-b12.zip
00:37:01 
00:37:01 release-zip:
00:37:01 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-578-99f4f59171-ice36-b12.zip
00:37:11 
00:37:11 BUILD SUCCESSFUL
00:37:11 Total time: 1 minute 20 seconds
00:37:11 ++ '[' -d .git ']'
00:37:11 ++ python3 ./build.py release-src
00:37:11 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
00:37:12 
00:37:12 release-src-git:
00:37:12 Releasing openmicroscopy-5.6.3-578-99f4f59171-ice36-b12
00:37:13   - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-578-99f4f59171-ice36-b12.zip
00:37:13   - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-578-99f4f59171-ice36-b12-base.zip
00:37:15 
00:37:15 BUILD SUCCESSFUL
00:37:15 Total time: 3 seconds
00:37:15 ++ echo BUILD_NUMBER=12
00:37:15 ++ echo OMERO_BRANCH=merge_ci
00:37:15 ++ git_info
00:37:15 +++ git rev-parse HEAD
00:37:15 ++ HEAD=99f4f59171be053cab43332e8444e2aa58380413
00:37:15 ++ git log --max-count=1 99f4f59171be053cab43332e8444e2aa58380413
00:37:15 ++ env
00:37:15 ++ sort
00:37:15 Archiving artifacts
00:37:30 Finished: SUCCESS