08:54:23Started by upstream project "Trigger" build number 14908:54:23originally caused by:
08:54:23 Started by user devspace08:54:23 Restarted from build #148, stage OMERO Python
08:54:23Running as SYSTEM
08:54:23Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
08:54:23The recommended git tool is: NONE
08:54:23No credentials specified
08:54:23 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10
08:54:23Fetching changes from the remote Git repository
08:54:23 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
08:54:23Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git08:54:23 > git --version # timeout=10
08:54:23 > git --version # 'git version 2.39.3'
08:54:23 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
08:54:29 > git rev-parse origin/merge_ci^{commit} # timeout=10
08:54:29Checking out Revision 6e4e8b4411a049c9feea9c3819bfb66ac3c0b928 (origin/merge_ci)
08:54:29 > git config core.sparsecheckout # timeout=10
08:54:29 > git checkout -f 6e4e8b4411a049c9feea9c3819bfb66ac3c0b928 # timeout=10
08:54:29Commit message: "Add version.properties to etc/omero.properties"
08:54:29 > git rev-list --no-walk 2a6e4b543fe776fc04a98272eafac8eb87b7e61c # timeout=10
08:54:29Cleaning workspace
08:54:29 > git rev-parse --verify HEAD # timeout=10
08:54:29Resetting working tree
08:54:29 > git reset --hard # timeout=10
08:54:29 > git clean -fdx # timeout=10
08:54:29Copied 6 artifacts from "OMERO-python-superbuild-build" build number 12608:54:29[OMERO-build] $ /bin/bash -xe /tmp/jenkins270815349558282512.sh
08:54:29+ mv omero-scripts/dist/omero_scripts-5.8.3.dev0.tar.gz .
08:54:29+ cd src
08:54:29+ export OMERO_BRANCH=merge_ci
08:54:29+ OMERO_BRANCH=merge_ci
08:54:29+ OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
08:54:29+ source /home/omero/settings.env
08:54:29++ OMERO_DB_HOST=pg
08:54:29++ OMERO_DB_USER=postgres
08:54:29++ OMERO_DB_PASS=
08:54:29++ OMERO_ROOT_PASS=omero
08:54:29++ OMERO_DATA_DIR=/OMERO
08:54:29++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
08:54:29+ python3 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
08:54:32+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl08:54:34Collecting zeroc-ice==3.6.5
08:54:35 Downloading https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl (31.3 MB)
08:54:37WARNING: You are using pip version 21.2.3; however, version 24.1.2 is available.
08:54:37You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command.
08:54:37+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U setuptools omero-py
08:54:37Requirement already satisfied: setuptools in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (71.1.0)
08:54:38Requirement already satisfied: omero-py in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (5.19.4)
08:54:38Requirement already satisfied: numpy<2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.4)
08:54:38Requirement already satisfied: portalocker in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.8.2)
08:54:38Requirement already satisfied: appdirs in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.4.4)
08:54:38Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (3.6.5)
08:54:38Requirement already satisfied: Pillow>=10.0.0 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (10.2.0)
08:54:38Requirement already satisfied: urllib3<2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.18)
08:54:38Requirement already satisfied: PyYAML in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (6.0.1)
08:54:38Requirement already satisfied: future in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.0.0)
08:54:38Requirement already satisfied: requests in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.31.0)
08:54:38Requirement already satisfied: idna<4,>=2.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.6)
08:54:38Requirement already satisfied: certifi>=2017.4.17 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (2024.2.2)
08:54:38Requirement already satisfied: charset-normalizer<4,>=2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.3.2)
08:54:38WARNING: You are using pip version 21.2.3; however, version 24.1.2 is available.
08:54:38You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command.
08:54:38+ source docs/hudson/OMERO.sh
08:54:38++ set -e
08:54:38++ set -u
08:54:38++ set -x
08:54:38++ source docs/hudson/functions.sh
08:54:38++ echo Building merge_ci
08:54:38Building merge_ci
08:54:38++ python3 ./build.py build-dev release-all
08:54:38OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0
08:54:39Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
08:54:4008:54:40check-ivy:
08:54:40Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
08:54:40Created dir: /home/omero/workspace/OMERO-build/src/target
08:54:41:: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ ::
08:54:41:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
08:54:4208:54:42build-scons:
08:54:42Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
08:54:43No sub-builds to iterate on
08:54:43Entering /home/omero/workspace/OMERO-build/src/components/tools...
08:54:4308:54:43buildlist:
08:54:43:: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ ::
08:54:43:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
08:54:4308:54:43clean:
08:54:43Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
08:54:43Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
08:54:4308:54:43python-clean:
08:54:43WARNING: '' not a valid package name; please use only .-separated package names in setup.py
08:54:43/usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-486-6e4e8b4411-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
08:54:43 warnings.warn(
08:54:44running clean
08:54:44Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
08:54:44Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
08:54:4408:54:44python-clean:
08:54:44WARNING: '' not a valid package name; please use only .-separated package names in setup.py
08:54:44/usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-486-6e4e8b4411-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
08:54:44 warnings.warn(
08:54:44running clean
08:54:44Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
08:54:44Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
08:54:44Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
08:54:44Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
08:54:4408:54:44python-clean:
08:54:44WARNING: '' not a valid package name; please use only .-separated package names in setup.py
08:54:44/usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-486-6e4e8b4411-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
08:54:44 warnings.warn(
08:54:44running clean
08:54:44Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
08:54:44Deleting directory /home/omero/workspace/OMERO-build/src/target
08:54:4508:54:45build-scons:
08:54:45Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
08:54:4508:54:45build:
08:54:45No sub-builds to iterate on
08:54:45Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
08:54:45Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
08:54:45Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
08:54:45Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
08:54:4508:54:45tools-init:
08:54:45no-op
08:54:4508:54:45retrieve:
08:54:45:: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ ::
08:54:45:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
08:55:2408:55:24prepare:
08:55:24Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
08:55:24Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
08:55:24Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
08:55:24Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
08:55:24Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
08:55:24Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
08:55:24Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
08:55:24Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
08:55:24Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
08:55:24Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
08:55:24Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
08:55:24Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
08:55:24Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
08:55:24Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
08:55:24Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
08:55:2408:55:24pre-compile:
08:55:24Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
08:55:24Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
08:55:24Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
08:55:24Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
08:55:24Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
08:55:2408:55:24compile:
08:55:24no-op
08:55:2408:55:24package:
08:55:24Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
08:55:2508:55:25install:
08:55:25:: delivering :: omero#omero_client;working@121c5c9aa309 :: 5.6.3-486-6e4e8b4411-ice36 :: integration :: Wed Jul 24 08:54:45 UTC 2024
08:55:25 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
08:55:25:: publishing :: omero#omero_client
08:55:25 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-486-6e4e8b4411-ice36/omero_client-5.6.3-486-6e4e8b4411-ice36.jar
08:55:25 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-486-6e4e8b4411-ice36/omero_client-5.6.3-486-6e4e8b4411-ice36.xml
08:55:25Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
08:55:25Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
08:55:2508:55:25retrieve:
08:55:25:: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ ::
08:55:25:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
08:55:26Entering /home/omero/workspace/OMERO-build/src/components/tools...
08:55:2608:55:26dist:
08:55:26Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
08:55:26Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
08:55:26Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
08:55:26Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.8.3.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
08:55:26Copying 28 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
08:55:26Copying 28 files to /home/omero/workspace/OMERO-build/src/dist
08:55:26Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
08:55:26Entering /home/omero/workspace/OMERO-build/src/components/tests...
08:55:26Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
08:55:2608:55:26copy-licenses:
08:55:26Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
08:55:26Created dir: /home/omero/workspace/OMERO-build/src/dist/share
08:55:26Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
08:55:2608:55:26copy-history:
08:55:26Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
08:55:2608:55:26copy-etc:
08:55:26Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
08:55:27Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
08:55:2708:55:27copy-sql:
08:55:27Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
08:55:3908:55:39copy-server:
08:55:39 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.0.11 won
08:55:3908:55:39copy-client:
08:55:39Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
08:55:41 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.0.11 won
08:55:4108:55:41update-version:
08:55:41Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
08:55:4108:55:41create-workdirs:
08:55:41Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
08:55:41Created dir: /home/omero/workspace/OMERO-build/src/dist/var
08:55:4108:55:41copy-luts:
08:55:41Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
08:55:41Copying 39 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
08:55:4108:55:41test-compile:
08:55:41:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
08:55:41Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
08:55:41Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
08:55:41Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
08:55:41Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
08:55:42Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
08:55:42Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
08:55:42Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
08:55:4208:55:42testng-init:
08:55:42:: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ ::
08:55:42:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
08:55:4508:55:45,298 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
08:55:4508:55:45,301 |-INFO in ch.qos.logback.classic.util.ContextInitializer@34be49c0 - No custom configurators were discovered as a service.
08:55:4508:55:45,301 |-INFO in ch.qos.logback.classic.util.ContextInitializer@34be49c0 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
08:55:4508:55:45,304 |-INFO in ch.qos.logback.classic.util.ContextInitializer@34be49c0 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
08:55:4508:55:45,305 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
08:55:4508:55:45,305 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
08:55:4508:55:45,306 |-INFO in ch.qos.logback.classic.util.ContextInitializer@34be49c0 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
08:55:4508:55:45,306 |-INFO in ch.qos.logback.classic.util.ContextInitializer@34be49c0 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
08:55:4508:55:45,307 |-INFO in ch.qos.logback.classic.util.ContextInitializer@34be49c0 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
08:55:4508:55:45,308 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
08:55:4508:55:45,308 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
08:55:4508:55:45,309 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@5735f981 - Resource [logback.xml] occurs multiple times on the classpath.
08:55:4508:55:45,309 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@5735f981 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
08:55:4508:55:45,309 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@5735f981 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
08:55:4508:55:45,510 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
08:55:4508:55:45,510 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
08:55:4508:55:45,529 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
08:55:4508:55:45,531 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@7f4c8611 - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
08:55:4508:55:45,531 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@7f4c8611 - Please move "immediateFlush" property into the enclosing appender.
08:55:4508:55:45,591 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@7f4c8611 - Setting the "immediateFlush" property of the enclosing appender to true
08:55:4508:55:45,591 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
08:55:4508:55:45,591 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
08:55:4508:55:45,592 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
08:55:4508:55:45,592 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
08:55:4508:55:45,592 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
08:55:4508:55:45,592 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
08:55:4508:55:45,593 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@767bd4ca - End of configuration.
08:55:4508:55:45,595 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@30cd738c - Registering current configuration as safe fallback point
08:55:4508:55:45,595 |-INFO in ch.qos.logback.classic.util.ContextInitializer@34be49c0 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 288 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
08:55:4508:55:45lifecycle.test-compile:
08:55:45Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
08:55:45Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
08:55:46warning: [options] bootstrap class path not set in conjunction with -source 8
08:55:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
08:55:50import omero.grid.RawAccessRequest;
08:55:50 ^
08:55:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
08:55:50import omero.grid.RawAccessRequest;
08:55:50 ^
08:55:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
08:55:50import omero.grid.RawAccessRequest;
08:55:50 ^
08:55:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
08:55:50import omero.model.ImportJob;
08:55:50 ^
08:55:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
08:55:50import omero.model.ImportJobI;
08:55:50 ^
08:55:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated
08:55:51 IObject link = (IObject) linkClass.newInstance();
08:55:51 ^
08:55:51 where T is a type-variable:
08:55:51 T extends Object declared in class Class
08:55:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
08:55:51 T copy = (T) obj.getClass().newInstance();
08:55:51 ^
08:55:51 where T is a type-variable:
08:55:51 T extends Object declared in class Class
08:55:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
08:55:51 RawAccessRequest raw = new RawAccessRequest();
08:55:51 ^
08:55:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
08:55:51 RawAccessRequest raw = new RawAccessRequest();
08:55:51 ^
08:55:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
08:55:51 raw.repoUuid = legacy.root().getHash().getValue();
08:55:51 ^
08:55:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
08:55:51 raw.command = "rm";
08:55:51 ^
08:55:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
08:55:51 raw.args = Arrays.asList(path);
08:55:51 ^
08:55:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
08:55:52 final IObject link = linkClass.newInstance();
08:55:52 ^
08:55:52 where T is a type-variable:
08:55:52 T extends Object declared in class Class
08:55:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
08:55:52 originalLink.setChild(annotationClass.newInstance());
08:55:52 ^
08:55:52 where T is a type-variable:
08:55:52 T extends Object declared in class Class
08:55:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
08:55:52 RoiResult r = svc.findByImage(id, new RoiOptions());
08:55:52 ^
08:55:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
08:55:52 final RawAccessRequest request = new RawAccessRequest();
08:55:52 ^
08:55:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
08:55:52 final RawAccessRequest request = new RawAccessRequest();
08:55:52 ^
08:55:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
08:55:52 request.repoUuid = repo.root().getHash().getValue();
08:55:52 ^
08:55:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
08:55:52 request.command = "exists";
08:55:52 ^
08:55:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
08:55:52 request.args = Collections.singletonList(dirPath);
08:55:52 ^
08:55:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
08:55:52 final RawAccessRequest request = new RawAccessRequest();
08:55:52 ^
08:55:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
08:55:52 final RawAccessRequest request = new RawAccessRequest();
08:55:52 ^
08:55:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
08:55:52 request.repoUuid = repo.root().getHash().getValue();
08:55:52 ^
08:55:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
08:55:52 request.command = "exists";
08:55:52 ^
08:55:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
08:55:52 request.args = Collections.singletonList(dirName);
08:55:52 ^
08:55:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
08:55:53 final ImportJob importJob = new ImportJobI();
08:55:53 ^
08:55:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
08:55:53 final ImportJob importJob = new ImportJobI();
08:55:53 ^
08:55:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
08:55:53 importJob.setImageName(omero.rtypes.rstring(name));
08:55:53 ^
08:55:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
08:55:53 importJob.setImageDescription(omero.rtypes.rstring(desc));
08:55:53 ^
08:55:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
08:55:53 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
08:55:53 ^
08:55:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
08:55:53 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
08:55:53 ^
08:55:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
08:55:53 final String savedName = sent.getImageName().getValue().toString();
08:55:53 ^
08:55:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
08:55:53 final String savedDesc = sent.getImageDescription().getValue().toString();
08:55:53 ^
08:55:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
08:55:53 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
08:55:53 ^
08:55:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
08:55:53 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
08:55:53 ^
08:55:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
08:55:53 final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
08:55:53 ^
08:55:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
08:55:53 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
08:55:53 ^
08:55:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
08:55:53 RoiResult r = svc.findByImage(image.getId().getValue(),
08:55:53 ^
08:55:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
08:55:53 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
08:55:53 ^
08:55:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
08:55:53 l = svc.getRoiMeasurements(image.getId().getValue(), options);
08:55:53 ^
08:55:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
08:55:53 l = svc.getRoiMeasurements(image.getId().getValue(), options);
08:55:53 ^
08:55:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
08:55:53 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
08:55:53 ^
08:55:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
08:55:53 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
08:55:53 ^
08:55:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
08:55:53 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
08:55:53 ^
08:55:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
08:55:53 table = svc.getTable(f.getId().getValue());
08:55:53 ^
08:55:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
08:55:53 RoiResult r = svc.findByImage(image.getId().getValue(),
08:55:53 ^
08:55:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
08:55:53 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
08:55:53 ^
08:55:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
08:55:53 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
08:55:53 ^
08:55:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
08:55:53 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
08:55:53 ^
08:55:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
08:55:53 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
08:55:53 ^
08:55:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
08:55:53 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
08:55:53 ^
08:55:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
08:55:53 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
08:55:53 ^
08:55:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
08:55:53 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
08:55:53 ^
08:55:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
08:55:53 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
08:55:53 ^
08:55:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Long(long) in Long has been deprecated
08:55:53 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
08:55:53 ^
08:55:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
08:55:53 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
08:55:53 ^
08:55:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
08:55:53 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
08:55:53 ^
08:55:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
08:55:53 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
08:55:53 ^
08:55:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
08:55:53 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
08:55:53 ^
08:55:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
08:55:53 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
08:55:53 ^
08:55:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
08:55:53 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
08:55:53 ^
08:55:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
08:55:53 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
08:55:53 ^
08:55:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
08:55:53 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
08:55:53 ^
08:55:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
08:55:53 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
08:55:53 ^
08:55:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
08:55:53 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
08:55:53 ^
08:55:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
08:55:53 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
08:55:53 ^
08:55:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
08:55:53 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
08:55:53 ^
08:55:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
08:55:53 svc.getShapeStatsRestricted(
08:55:53 ^
08:55:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
08:55:53 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
08:55:53 ^
08:55:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
08:55:53 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
08:55:53 ^
08:55:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
08:55:53 request.typesToIgnore = Collections.singletonList("TagAnnotation");
08:55:53 ^
08:55:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
08:55:53 request.typesToIgnore = Collections.singletonList("IAnnotationLink");
08:55:53 ^
08:55:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
08:55:53 request.typesToIgnore = Collections.singletonList("Annotation");
08:55:53 ^
08:55:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
08:55:53 request.typesToIgnore = Collections.singletonList("Annotation");
08:55:53 ^
08:55:54/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
08:55:54 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
08:55:54 ^
08:55:54/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
08:55:54 p2.setRelatedTo(p1);
08:55:54 ^
08:55:54/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
08:55:54 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
08:55:54 ^
08:55:54/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
08:55:54 pixels1.setRelatedTo(pixels2);
08:55:54 ^
08:55:54/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
08:55:54 Pixels pixels = pixels1.getRelatedTo();
08:55:54 ^
08:55:54/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
08:55:54 Assert.assertNull(pixels1.getRelatedTo());
08:55:54 ^
08:55:54/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
08:55:54 pixels1.setRelatedTo(pixels2);
08:55:54 ^
08:55:54/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
08:55:54 Pixels pixels = pixels1.getRelatedTo();
08:55:54 ^
08:55:54/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
08:55:54 Assert.assertNull(pixels1.getRelatedTo());
08:55:54 ^
08:55:54/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
08:55:54 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
08:55:54 ^
08:55:54/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
08:55:54 l = svc.getRoiMeasurements(image.getId().getValue(), options);
08:55:54 ^
08:55:54/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
08:55:54 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
08:55:54 ^
08:55:54/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
08:55:54 l = svc.getRoiMeasurements(image.getId().getValue(), options);
08:55:54 ^
08:55:54Note: Some input files use unchecked or unsafe operations.
08:55:54Note: Recompile with -Xlint:unchecked for details.
08:55:5488 warnings
08:55:54Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_1676562662.tmp
08:55:54Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar
08:55:54:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
08:55:54:: delivering :: omero#OmeroJava-test;working@121c5c9aa309 :: 5.6.3-486-6e4e8b4411-ice36 :: integration :: Wed Jul 24 08:55:42 UTC 2024
08:55:54 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml
08:55:54:: publishing :: omero#OmeroJava-test
08:55:54 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-486-6e4e8b4411-ice36.jar
08:55:54 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-486-6e4e8b4411-ice36.xml
08:55:5408:55:54build-eclipse:
08:55:54No sub-builds to iterate on
08:55:54Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
08:55:5408:55:54retrieve:
08:55:54:: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ ::
08:55:54:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
08:55:5708:55:57prepare:
08:55:57Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
08:55:5808:55:58release-clients:
08:55:58Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-486-6e4e8b4411-ice36.zip
08:56:0408:56:04release-zip:
08:56:04Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-486-6e4e8b4411-ice36.zip
08:56:1608:56:16BUILD SUCCESSFUL
08:56:16Total time: 1 minute 36 seconds
08:56:16++ '[' -d .git ']'
08:56:16++ python3 ./build.py release-src
08:56:16OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0
08:56:16Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
08:56:1608:56:16release-src-git:
08:56:16Releasing openmicroscopy-5.6.3-486-6e4e8b4411-ice36
08:56:19 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-486-6e4e8b4411-ice36.zip
08:56:19 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-486-6e4e8b4411-ice36-base.zip
08:56:2008:56:20BUILD SUCCESSFUL
08:56:20Total time: 4 seconds
08:56:20++ echo BUILD_NUMBER=127
08:56:20++ echo OMERO_BRANCH=merge_ci
08:56:20++ git_info
08:56:20+++ git rev-parse HEAD
08:56:20++ HEAD=6e4e8b4411a049c9feea9c3819bfb66ac3c0b928
08:56:20++ git log --max-count=1 6e4e8b4411a049c9feea9c3819bfb66ac3c0b928
08:56:20++ env
08:56:20++ sort
08:56:21Archiving artifacts
08:56:48Finished: SUCCESS
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