13:04:59Started by upstream project "Trigger" build number 15013:04:59originally caused by:
13:04:59 Started by user devspace13:04:59 Restarted from build #149, stage OMERO Distribution
13:04:59Running as SYSTEM
13:04:59Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
13:04:59The recommended git tool is: NONE
13:04:59No credentials specified
13:04:59 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10
13:04:59Fetching changes from the remote Git repository
13:04:59 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
13:04:59Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git13:04:59 > git --version # timeout=10
13:04:59 > git --version # 'git version 2.39.3'
13:04:59 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
13:04:59 > git rev-parse origin/merge_ci^{commit} # timeout=10
13:04:59Checking out Revision ec16e0d4cdfcca0e50a68db272afe08f144d30c7 (origin/merge_ci)
13:04:59 > git config core.sparsecheckout # timeout=10
13:04:59 > git checkout -f ec16e0d4cdfcca0e50a68db272afe08f144d30c7 # timeout=10
13:04:59Commit message: "Add version.properties to etc/omero.properties"
13:04:59 > git rev-list --no-walk 6e4e8b4411a049c9feea9c3819bfb66ac3c0b928 # timeout=10
13:04:59Cleaning workspace
13:04:59 > git rev-parse --verify HEAD # timeout=10
13:04:59Resetting working tree
13:04:59 > git reset --hard # timeout=10
13:04:59 > git clean -fdx # timeout=10
13:05:00Copied 6 artifacts from "OMERO-python-superbuild-build" build number 12613:05:00[OMERO-build] $ /bin/bash -xe /tmp/jenkins14939095359916653496.sh
13:05:00+ mv omero-scripts/dist/omero_scripts-5.8.3.dev0.tar.gz .
13:05:00+ cd src
13:05:00+ export OMERO_BRANCH=merge_ci
13:05:00+ OMERO_BRANCH=merge_ci
13:05:00+ OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
13:05:00+ source /home/omero/settings.env
13:05:00++ OMERO_DB_HOST=pg
13:05:00++ OMERO_DB_USER=postgres
13:05:00++ OMERO_DB_PASS=
13:05:00++ OMERO_ROOT_PASS=omero
13:05:00++ OMERO_DATA_DIR=/OMERO
13:05:00++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
13:05:00+ python3 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
13:05:01+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl13:05:02Collecting zeroc-ice==3.6.5
13:05:02 Downloading https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl (31.3 MB)
13:05:06WARNING: You are using pip version 21.2.3; however, version 24.1.2 is available.
13:05:06You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command.
13:05:06+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U setuptools omero-py
13:05:07Requirement already satisfied: setuptools in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (71.1.0)
13:05:07Requirement already satisfied: omero-py in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (5.19.4)
13:05:08Requirement already satisfied: Pillow>=10.0.0 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (10.2.0)
13:05:08Requirement already satisfied: requests in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.31.0)
13:05:08Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (3.6.5)
13:05:08Requirement already satisfied: PyYAML in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (6.0.1)
13:05:08Requirement already satisfied: future in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.0.0)
13:05:08Requirement already satisfied: appdirs in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.4.4)
13:05:08Requirement already satisfied: urllib3<2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.18)
13:05:08Requirement already satisfied: numpy<2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.4)
13:05:08Requirement already satisfied: portalocker in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.8.2)
13:05:08Requirement already satisfied: certifi>=2017.4.17 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (2024.2.2)
13:05:08Requirement already satisfied: charset-normalizer<4,>=2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.3.2)
13:05:08Requirement already satisfied: idna<4,>=2.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.6)
13:05:08WARNING: You are using pip version 21.2.3; however, version 24.1.2 is available.
13:05:08You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command.
13:05:08+ source docs/hudson/OMERO.sh
13:05:08++ set -e
13:05:08++ set -u
13:05:08++ set -x
13:05:08++ source docs/hudson/functions.sh
13:05:08++ echo Building merge_ci
13:05:08Building merge_ci
13:05:08++ python3 ./build.py build-dev release-all
13:05:08OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0
13:05:08Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
13:05:0813:05:08check-ivy:
13:05:08Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
13:05:08Created dir: /home/omero/workspace/OMERO-build/src/target
13:05:09:: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ ::
13:05:09:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
13:05:0913:05:09build-scons:
13:05:09Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
13:05:09No sub-builds to iterate on
13:05:09Entering /home/omero/workspace/OMERO-build/src/components/tools...
13:05:0913:05:09buildlist:
13:05:09:: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ ::
13:05:09:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
13:05:0913:05:09clean:
13:05:09Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
13:05:09Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
13:05:1013:05:10python-clean:
13:05:10WARNING: '' not a valid package name; please use only .-separated package names in setup.py
13:05:10/usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-485-ec16e0d4cd-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
13:05:10 warnings.warn(
13:05:10running clean
13:05:10Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
13:05:10Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
13:05:1013:05:10python-clean:
13:05:10WARNING: '' not a valid package name; please use only .-separated package names in setup.py
13:05:10/usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-485-ec16e0d4cd-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
13:05:10 warnings.warn(
13:05:10running clean
13:05:10Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
13:05:10Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
13:05:10Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
13:05:10Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
13:05:1013:05:10python-clean:
13:05:10WARNING: '' not a valid package name; please use only .-separated package names in setup.py
13:05:10/usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-485-ec16e0d4cd-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
13:05:10 warnings.warn(
13:05:10running clean
13:05:10Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
13:05:10Deleting directory /home/omero/workspace/OMERO-build/src/target
13:05:1013:05:10build-scons:
13:05:10Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
13:05:1013:05:10build:
13:05:10No sub-builds to iterate on
13:05:10Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
13:05:10Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
13:05:10Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
13:05:10Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
13:05:1013:05:10tools-init:
13:05:10no-op
13:05:1113:05:11retrieve:
13:05:11:: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ ::
13:05:11:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
13:05:2113:05:21prepare:
13:05:21Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
13:05:21Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
13:05:21Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
13:05:21Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
13:05:21Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
13:05:21Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
13:05:21Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
13:05:21Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
13:05:21Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
13:05:21Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
13:05:21Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
13:05:21Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
13:05:21Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
13:05:21Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
13:05:21Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
13:05:2113:05:21pre-compile:
13:05:21Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
13:05:21Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
13:05:21Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
13:05:22Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
13:05:22Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
13:05:2213:05:22compile:
13:05:22no-op
13:05:2213:05:22package:
13:05:22Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
13:05:2213:05:22install:
13:05:22:: delivering :: omero#omero_client;working@121c5c9aa309 :: 5.6.3-485-ec16e0d4cd-ice36 :: integration :: Wed Jul 24 13:05:10 UTC 2024
13:05:22 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
13:05:22:: publishing :: omero#omero_client
13:05:22 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-485-ec16e0d4cd-ice36/omero_client-5.6.3-485-ec16e0d4cd-ice36.jar
13:05:22 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-485-ec16e0d4cd-ice36/omero_client-5.6.3-485-ec16e0d4cd-ice36.xml
13:05:22Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
13:05:22Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
13:05:2213:05:22retrieve:
13:05:22:: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ ::
13:05:22:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
13:05:23Entering /home/omero/workspace/OMERO-build/src/components/tools...
13:05:2313:05:23dist:
13:05:23Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
13:05:23Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
13:05:23Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
13:05:23Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.8.3.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
13:05:23Copying 28 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
13:05:23Copying 28 files to /home/omero/workspace/OMERO-build/src/dist
13:05:23Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
13:05:23Entering /home/omero/workspace/OMERO-build/src/components/tests...
13:05:23Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
13:05:2313:05:23copy-licenses:
13:05:23Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
13:05:23Created dir: /home/omero/workspace/OMERO-build/src/dist/share
13:05:23Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
13:05:2313:05:23copy-history:
13:05:23Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
13:05:2313:05:23copy-etc:
13:05:23Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
13:05:23Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
13:05:2313:05:23copy-sql:
13:05:23Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
13:05:2913:05:29copy-server:
13:05:29 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.0.11 won
13:05:2913:05:29copy-client:
13:05:29Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
13:05:30 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.0.11 won
13:05:3113:05:31update-version:
13:05:31Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
13:05:3113:05:31create-workdirs:
13:05:31Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
13:05:31Created dir: /home/omero/workspace/OMERO-build/src/dist/var
13:05:3113:05:31copy-luts:
13:05:31Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
13:05:31Copying 39 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
13:05:3113:05:31test-compile:
13:05:31:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
13:05:31Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
13:05:31Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
13:05:31Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
13:05:31Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
13:05:31Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
13:05:31Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
13:05:31Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
13:05:3113:05:31testng-init:
13:05:31:: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ ::
13:05:31:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
13:05:3413:05:33,947 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
13:05:3413:05:33,950 |-INFO in ch.qos.logback.classic.util.ContextInitializer@11cc812f - No custom configurators were discovered as a service.
13:05:3413:05:33,950 |-INFO in ch.qos.logback.classic.util.ContextInitializer@11cc812f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
13:05:3413:05:33,953 |-INFO in ch.qos.logback.classic.util.ContextInitializer@11cc812f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
13:05:3413:05:33,954 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
13:05:3413:05:33,954 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
13:05:3413:05:33,955 |-INFO in ch.qos.logback.classic.util.ContextInitializer@11cc812f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
13:05:3413:05:33,955 |-INFO in ch.qos.logback.classic.util.ContextInitializer@11cc812f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
13:05:3413:05:33,957 |-INFO in ch.qos.logback.classic.util.ContextInitializer@11cc812f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
13:05:3413:05:33,957 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
13:05:3413:05:33,957 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
13:05:3413:05:33,958 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@1c140c7c - Resource [logback.xml] occurs multiple times on the classpath.
13:05:3413:05:33,958 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@1c140c7c - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
13:05:3413:05:33,958 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@1c140c7c - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
13:05:3413:05:34,160 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
13:05:3413:05:34,160 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
13:05:3413:05:34,179 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
13:05:3413:05:34,181 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@4b4989f6 - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
13:05:3413:05:34,181 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@4b4989f6 - Please move "immediateFlush" property into the enclosing appender.
13:05:3413:05:34,242 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@4b4989f6 - Setting the "immediateFlush" property of the enclosing appender to true
13:05:3413:05:34,243 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
13:05:3413:05:34,243 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
13:05:3413:05:34,243 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
13:05:3413:05:34,243 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
13:05:3413:05:34,243 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
13:05:3413:05:34,244 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
13:05:3413:05:34,245 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5f6e202 - End of configuration.
13:05:3413:05:34,247 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@7046ce6a - Registering current configuration as safe fallback point
13:05:3413:05:34,247 |-INFO in ch.qos.logback.classic.util.ContextInitializer@11cc812f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 290 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
13:05:3413:05:34lifecycle.test-compile:
13:05:34Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
13:05:34Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
13:05:34warning: [options] bootstrap class path not set in conjunction with -source 8
13:05:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
13:05:35import omero.grid.RawAccessRequest;
13:05:35 ^
13:05:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
13:05:36import omero.grid.RawAccessRequest;
13:05:36 ^
13:05:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
13:05:36import omero.grid.RawAccessRequest;
13:05:36 ^
13:05:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
13:05:36import omero.model.ImportJob;
13:05:36 ^
13:05:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
13:05:36import omero.model.ImportJobI;
13:05:36 ^
13:05:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated
13:05:36 IObject link = (IObject) linkClass.newInstance();
13:05:36 ^
13:05:36 where T is a type-variable:
13:05:36 T extends Object declared in class Class
13:05:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
13:05:37 T copy = (T) obj.getClass().newInstance();
13:05:37 ^
13:05:37 where T is a type-variable:
13:05:37 T extends Object declared in class Class
13:05:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
13:05:37 RawAccessRequest raw = new RawAccessRequest();
13:05:37 ^
13:05:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
13:05:37 RawAccessRequest raw = new RawAccessRequest();
13:05:37 ^
13:05:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
13:05:37 raw.repoUuid = legacy.root().getHash().getValue();
13:05:37 ^
13:05:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
13:05:37 raw.command = "rm";
13:05:37 ^
13:05:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
13:05:37 raw.args = Arrays.asList(path);
13:05:37 ^
13:05:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
13:05:37 final IObject link = linkClass.newInstance();
13:05:37 ^
13:05:37 where T is a type-variable:
13:05:37 T extends Object declared in class Class
13:05:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
13:05:37 originalLink.setChild(annotationClass.newInstance());
13:05:37 ^
13:05:37 where T is a type-variable:
13:05:37 T extends Object declared in class Class
13:05:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
13:05:37 RoiResult r = svc.findByImage(id, new RoiOptions());
13:05:37 ^
13:05:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
13:05:38 final RawAccessRequest request = new RawAccessRequest();
13:05:38 ^
13:05:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
13:05:38 final RawAccessRequest request = new RawAccessRequest();
13:05:38 ^
13:05:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
13:05:38 request.repoUuid = repo.root().getHash().getValue();
13:05:38 ^
13:05:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
13:05:38 request.command = "exists";
13:05:38 ^
13:05:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
13:05:38 request.args = Collections.singletonList(dirPath);
13:05:38 ^
13:05:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
13:05:38 final RawAccessRequest request = new RawAccessRequest();
13:05:38 ^
13:05:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
13:05:38 final RawAccessRequest request = new RawAccessRequest();
13:05:38 ^
13:05:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
13:05:38 request.repoUuid = repo.root().getHash().getValue();
13:05:38 ^
13:05:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
13:05:38 request.command = "exists";
13:05:38 ^
13:05:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
13:05:38 request.args = Collections.singletonList(dirName);
13:05:38 ^
13:05:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
13:05:38 final ImportJob importJob = new ImportJobI();
13:05:38 ^
13:05:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
13:05:38 final ImportJob importJob = new ImportJobI();
13:05:38 ^
13:05:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
13:05:38 importJob.setImageName(omero.rtypes.rstring(name));
13:05:38 ^
13:05:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
13:05:38 importJob.setImageDescription(omero.rtypes.rstring(desc));
13:05:38 ^
13:05:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
13:05:38 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
13:05:38 ^
13:05:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
13:05:38 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
13:05:38 ^
13:05:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
13:05:38 final String savedName = sent.getImageName().getValue().toString();
13:05:38 ^
13:05:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
13:05:38 final String savedDesc = sent.getImageDescription().getValue().toString();
13:05:38 ^
13:05:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
13:05:38 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
13:05:38 ^
13:05:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
13:05:38 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
13:05:38 ^
13:05:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
13:05:38 final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
13:05:38 ^
13:05:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
13:05:38 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
13:05:38 ^
13:05:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
13:05:38 RoiResult r = svc.findByImage(image.getId().getValue(),
13:05:38 ^
13:05:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
13:05:38 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
13:05:38 ^
13:05:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
13:05:38 l = svc.getRoiMeasurements(image.getId().getValue(), options);
13:05:38 ^
13:05:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
13:05:38 l = svc.getRoiMeasurements(image.getId().getValue(), options);
13:05:38 ^
13:05:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
13:05:38 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
13:05:38 ^
13:05:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
13:05:38 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
13:05:38 ^
13:05:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
13:05:38 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
13:05:38 ^
13:05:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
13:05:38 table = svc.getTable(f.getId().getValue());
13:05:38 ^
13:05:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
13:05:38 RoiResult r = svc.findByImage(image.getId().getValue(),
13:05:38 ^
13:05:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
13:05:38 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
13:05:38 ^
13:05:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
13:05:38 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
13:05:38 ^
13:05:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
13:05:38 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
13:05:38 ^
13:05:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
13:05:38 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
13:05:38 ^
13:05:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
13:05:38 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
13:05:38 ^
13:05:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
13:05:38 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
13:05:38 ^
13:05:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
13:05:38 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
13:05:38 ^
13:05:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
13:05:38 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
13:05:38 ^
13:05:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Long(long) in Long has been deprecated
13:05:38 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
13:05:38 ^
13:05:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
13:05:38 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
13:05:38 ^
13:05:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
13:05:38 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
13:05:38 ^
13:05:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
13:05:38 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
13:05:38 ^
13:05:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
13:05:38 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
13:05:38 ^
13:05:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
13:05:38 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
13:05:38 ^
13:05:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
13:05:38 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
13:05:38 ^
13:05:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
13:05:38 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
13:05:38 ^
13:05:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
13:05:38 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
13:05:38 ^
13:05:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
13:05:38 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
13:05:38 ^
13:05:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
13:05:38 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
13:05:38 ^
13:05:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
13:05:38 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
13:05:38 ^
13:05:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
13:05:38 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
13:05:38 ^
13:05:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
13:05:38 svc.getShapeStatsRestricted(
13:05:38 ^
13:05:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
13:05:38 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
13:05:38 ^
13:05:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
13:05:38 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
13:05:38 ^
13:05:39/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
13:05:39 request.typesToIgnore = Collections.singletonList("TagAnnotation");
13:05:39 ^
13:05:39/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
13:05:39 request.typesToIgnore = Collections.singletonList("IAnnotationLink");
13:05:39 ^
13:05:39/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
13:05:39 request.typesToIgnore = Collections.singletonList("Annotation");
13:05:39 ^
13:05:39/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
13:05:39 request.typesToIgnore = Collections.singletonList("Annotation");
13:05:39 ^
13:05:39/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
13:05:39 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
13:05:39 ^
13:05:39/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
13:05:39 p2.setRelatedTo(p1);
13:05:39 ^
13:05:39/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
13:05:39 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
13:05:39 ^
13:05:39/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
13:05:39 pixels1.setRelatedTo(pixels2);
13:05:39 ^
13:05:39/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
13:05:39 Pixels pixels = pixels1.getRelatedTo();
13:05:39 ^
13:05:39/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
13:05:39 Assert.assertNull(pixels1.getRelatedTo());
13:05:39 ^
13:05:39/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
13:05:39 pixels1.setRelatedTo(pixels2);
13:05:39 ^
13:05:39/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
13:05:39 Pixels pixels = pixels1.getRelatedTo();
13:05:39 ^
13:05:39/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
13:05:39 Assert.assertNull(pixels1.getRelatedTo());
13:05:39 ^
13:05:39/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
13:05:39 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
13:05:39 ^
13:05:39/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
13:05:39 l = svc.getRoiMeasurements(image.getId().getValue(), options);
13:05:39 ^
13:05:39/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
13:05:39 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
13:05:39 ^
13:05:39/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
13:05:39 l = svc.getRoiMeasurements(image.getId().getValue(), options);
13:05:39 ^
13:05:39Note: Some input files use unchecked or unsafe operations.
13:05:39Note: Recompile with -Xlint:unchecked for details.
13:05:3988 warnings
13:05:39Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_1524450615.tmp
13:05:39Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar
13:05:39:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
13:05:39:: delivering :: omero#OmeroJava-test;working@121c5c9aa309 :: 5.6.3-485-ec16e0d4cd-ice36 :: integration :: Wed Jul 24 13:05:31 UTC 2024
13:05:39 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml
13:05:39:: publishing :: omero#OmeroJava-test
13:05:39 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-485-ec16e0d4cd-ice36.jar
13:05:39 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-485-ec16e0d4cd-ice36.xml
13:05:3913:05:39build-eclipse:
13:05:39No sub-builds to iterate on
13:05:39Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
13:05:3913:05:39retrieve:
13:05:39:: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ ::
13:05:39:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
13:05:4213:05:42prepare:
13:05:42Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
13:05:4313:05:43release-clients:
13:05:43Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-485-ec16e0d4cd-ice36.zip
13:05:4913:05:49release-zip:
13:05:49Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-485-ec16e0d4cd-ice36.zip
13:06:0113:06:01BUILD SUCCESSFUL
13:06:01Total time: 52 seconds
13:06:01++ '[' -d .git ']'
13:06:01++ python3 ./build.py release-src
13:06:01OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0
13:06:01Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
13:06:0113:06:01release-src-git:
13:06:01Releasing openmicroscopy-5.6.3-485-ec16e0d4cd-ice36
13:06:03 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-485-ec16e0d4cd-ice36.zip
13:06:03 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-485-ec16e0d4cd-ice36-base.zip
13:06:0413:06:04BUILD SUCCESSFUL
13:06:04Total time: 3 seconds
13:06:04++ echo BUILD_NUMBER=128
13:06:04++ echo OMERO_BRANCH=merge_ci
13:06:04++ git_info
13:06:04+++ git rev-parse HEAD
13:06:04++ HEAD=ec16e0d4cdfcca0e50a68db272afe08f144d30c7
13:06:04++ git log --max-count=1 ec16e0d4cdfcca0e50a68db272afe08f144d30c7
13:06:04++ env
13:06:04++ sort
13:06:04Archiving artifacts
13:06:32Finished: SUCCESS
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