10:16:01Started by upstream project "Trigger" build number 15210:16:01originally caused by:
10:16:01 Started by user devspace10:16:01Running as SYSTEM
10:16:01Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
10:16:01The recommended git tool is: NONE
10:16:01No credentials specified
10:16:01 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10
10:16:01Fetching changes from the remote Git repository
10:16:01 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
10:16:01Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git10:16:01 > git --version # timeout=10
10:16:01 > git --version # 'git version 2.39.3'
10:16:01 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
10:16:01 > git rev-parse origin/merge_ci^{commit} # timeout=10
10:16:01Checking out Revision 8d06c82248c8a50a87e4bdbe7927736168cb1157 (origin/merge_ci)
10:16:01 > git config core.sparsecheckout # timeout=10
10:16:01 > git checkout -f 8d06c82248c8a50a87e4bdbe7927736168cb1157 # timeout=10
10:16:02Commit message: "Add version.properties to etc/omero.properties"
10:16:02 > git rev-list --no-walk ec16e0d4cdfcca0e50a68db272afe08f144d30c7 # timeout=10
10:16:02Cleaning workspace
10:16:02 > git rev-parse --verify HEAD # timeout=10
10:16:02Resetting working tree
10:16:02 > git reset --hard # timeout=10
10:16:02 > git clean -fdx # timeout=10
10:16:02Copied 6 artifacts from "OMERO-python-superbuild-build" build number 12710:16:02[OMERO-build] $ /bin/bash -xe /tmp/jenkins5840915112814043633.sh
10:16:02+ mv omero-scripts/dist/omero_scripts-5.8.3.dev0.tar.gz .
10:16:02+ cd src
10:16:02+ export OMERO_BRANCH=merge_ci
10:16:02+ OMERO_BRANCH=merge_ci
10:16:02+ OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
10:16:02+ source /home/omero/settings.env
10:16:02++ OMERO_DB_HOST=pg
10:16:02++ OMERO_DB_USER=postgres
10:16:02++ OMERO_DB_PASS=
10:16:02++ OMERO_ROOT_PASS=omero
10:16:02++ OMERO_DATA_DIR=/OMERO
10:16:02++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
10:16:02+ python3 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
10:16:04+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl10:16:04Collecting zeroc-ice==3.6.5
10:16:05 Downloading https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl (31.3 MB)
10:16:08WARNING: You are using pip version 21.2.3; however, version 24.1.2 is available.
10:16:08You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command.
10:16:08+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U setuptools omero-py
10:16:08Requirement already satisfied: setuptools in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (71.1.0)
10:16:09Requirement already satisfied: omero-py in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (5.19.4)
10:16:09Requirement already satisfied: numpy<2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.4)
10:16:09Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (3.6.5)
10:16:09Requirement already satisfied: PyYAML in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (6.0.1)
10:16:09Requirement already satisfied: portalocker in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.8.2)
10:16:09Requirement already satisfied: requests in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.31.0)
10:16:09Requirement already satisfied: urllib3<2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.18)
10:16:09Requirement already satisfied: appdirs in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.4.4)
10:16:09Requirement already satisfied: future in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.0.0)
10:16:09Requirement already satisfied: Pillow>=10.0.0 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (10.2.0)
10:16:09Requirement already satisfied: certifi>=2017.4.17 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (2024.2.2)
10:16:09Requirement already satisfied: idna<4,>=2.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.6)
10:16:09Requirement already satisfied: charset-normalizer<4,>=2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.3.2)
10:16:09WARNING: You are using pip version 21.2.3; however, version 24.1.2 is available.
10:16:09You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command.
10:16:09+ source docs/hudson/OMERO.sh
10:16:09++ set -e
10:16:09++ set -u
10:16:09++ set -x
10:16:09++ source docs/hudson/functions.sh
10:16:09++ echo Building merge_ci
10:16:09Building merge_ci
10:16:09++ python3 ./build.py build-dev release-all
10:16:09OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0
10:16:09Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
10:16:1010:16:10check-ivy:
10:16:10Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
10:16:10Created dir: /home/omero/workspace/OMERO-build/src/target
10:16:10:: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ ::
10:16:10:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
10:16:1110:16:11build-scons:
10:16:11Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
10:16:11No sub-builds to iterate on
10:16:11Entering /home/omero/workspace/OMERO-build/src/components/tools...
10:16:1110:16:11buildlist:
10:16:11:: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ ::
10:16:11:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
10:16:1110:16:11clean:
10:16:11Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
10:16:11Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
10:16:1110:16:11python-clean:
10:16:11WARNING: '' not a valid package name; please use only .-separated package names in setup.py
10:16:11/usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-487-8d06c82248-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
10:16:11 warnings.warn(
10:16:11running clean
10:16:11Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
10:16:12Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
10:16:1210:16:12python-clean:
10:16:12WARNING: '' not a valid package name; please use only .-separated package names in setup.py
10:16:12/usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-487-8d06c82248-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
10:16:12 warnings.warn(
10:16:12running clean
10:16:12Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
10:16:12Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
10:16:12Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
10:16:12Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
10:16:1210:16:12python-clean:
10:16:12WARNING: '' not a valid package name; please use only .-separated package names in setup.py
10:16:12/usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-487-8d06c82248-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
10:16:12 warnings.warn(
10:16:12running clean
10:16:12Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
10:16:12Deleting directory /home/omero/workspace/OMERO-build/src/target
10:16:1210:16:12build-scons:
10:16:12Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
10:16:1210:16:12build:
10:16:12No sub-builds to iterate on
10:16:12Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
10:16:12Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
10:16:12Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
10:16:12Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
10:16:1210:16:12tools-init:
10:16:12no-op
10:16:1310:16:13retrieve:
10:16:13:: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ ::
10:16:13:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
10:16:4010:16:40prepare:
10:16:40Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
10:16:40Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
10:16:40Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
10:16:40Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
10:16:40Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
10:16:40Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
10:16:40Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
10:16:40Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
10:16:40Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
10:16:40Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
10:16:40Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
10:16:40Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
10:16:40Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
10:16:40Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
10:16:40Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
10:16:4010:16:40pre-compile:
10:16:40Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
10:16:40Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
10:16:40Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
10:16:40Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
10:16:40Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
10:16:4010:16:40compile:
10:16:40no-op
10:16:4010:16:40package:
10:16:40Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
10:16:4110:16:41install:
10:16:41:: delivering :: omero#omero_client;working@121c5c9aa309 :: 5.6.3-487-8d06c82248-ice36 :: integration :: Thu Jul 25 10:16:12 UTC 2024
10:16:41 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
10:16:41:: publishing :: omero#omero_client
10:16:41 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-487-8d06c82248-ice36/omero_client-5.6.3-487-8d06c82248-ice36.jar
10:16:41 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-487-8d06c82248-ice36/omero_client-5.6.3-487-8d06c82248-ice36.xml
10:16:41Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
10:16:41Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
10:16:4110:16:41retrieve:
10:16:41:: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ ::
10:16:41:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
10:16:42Entering /home/omero/workspace/OMERO-build/src/components/tools...
10:16:4210:16:42dist:
10:16:42Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
10:16:42Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
10:16:42Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
10:16:42Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.8.3.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
10:16:42Copying 28 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
10:16:42Copying 28 files to /home/omero/workspace/OMERO-build/src/dist
10:16:42Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
10:16:42Entering /home/omero/workspace/OMERO-build/src/components/tests...
10:16:42Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
10:16:4210:16:42copy-licenses:
10:16:42Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
10:16:42Created dir: /home/omero/workspace/OMERO-build/src/dist/share
10:16:42Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
10:16:4210:16:42copy-history:
10:16:42Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
10:16:4210:16:42copy-etc:
10:16:42Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
10:16:42Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
10:16:4210:16:42copy-sql:
10:16:42Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
10:16:5010:16:50copy-server:
10:16:50 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.0.11 won
10:16:5010:16:50copy-client:
10:16:50Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
10:16:52 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.0.11 won
10:16:5210:16:52update-version:
10:16:52Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
10:16:5210:16:52create-workdirs:
10:16:52Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
10:16:52Created dir: /home/omero/workspace/OMERO-build/src/dist/var
10:16:5210:16:52copy-luts:
10:16:52Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
10:16:52Copying 39 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
10:16:5210:16:52test-compile:
10:16:52:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
10:16:52Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
10:16:52Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
10:16:52Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
10:16:52Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
10:16:52Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
10:16:52Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
10:16:52Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
10:16:5310:16:53testng-init:
10:16:53:: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ ::
10:16:53:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
10:17:0010:17:00,149 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
10:17:0010:17:00,152 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4b4989f6 - No custom configurators were discovered as a service.
10:17:0010:17:00,152 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4b4989f6 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
10:17:0010:17:00,155 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4b4989f6 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
10:17:0010:17:00,156 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
10:17:0010:17:00,156 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
10:17:0010:17:00,157 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4b4989f6 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
10:17:0010:17:00,157 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4b4989f6 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
10:17:0010:17:00,159 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4b4989f6 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
10:17:0010:17:00,159 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
10:17:0010:17:00,160 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
10:17:0010:17:00,161 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@5f6e202 - Resource [logback.xml] occurs multiple times on the classpath.
10:17:0010:17:00,161 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@5f6e202 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
10:17:0010:17:00,161 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@5f6e202 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
10:17:0010:17:00,402 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
10:17:0010:17:00,402 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
10:17:0010:17:00,422 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
10:17:0010:17:00,424 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@7046ce6a - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
10:17:0010:17:00,424 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@7046ce6a - Please move "immediateFlush" property into the enclosing appender.
10:17:0010:17:00,494 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@7046ce6a - Setting the "immediateFlush" property of the enclosing appender to true
10:17:0010:17:00,495 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
10:17:0010:17:00,495 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
10:17:0010:17:00,495 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
10:17:0010:17:00,495 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
10:17:0010:17:00,495 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
10:17:0010:17:00,495 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
10:17:0010:17:00,496 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@4c0d4bf2 - End of configuration.
10:17:0010:17:00,498 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@4b8c6dbc - Registering current configuration as safe fallback point
10:17:0010:17:00,498 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4b4989f6 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 339 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
10:17:0010:17:00lifecycle.test-compile:
10:17:00Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
10:17:00Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
10:17:00warning: [options] bootstrap class path not set in conjunction with -source 8
10:17:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
10:17:02import omero.grid.RawAccessRequest;
10:17:02 ^
10:17:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
10:17:02import omero.grid.RawAccessRequest;
10:17:02 ^
10:17:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
10:17:02import omero.grid.RawAccessRequest;
10:17:02 ^
10:17:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
10:17:02import omero.model.ImportJob;
10:17:02 ^
10:17:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
10:17:02import omero.model.ImportJobI;
10:17:02 ^
10:17:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated
10:17:03 IObject link = (IObject) linkClass.newInstance();
10:17:03 ^
10:17:03 where T is a type-variable:
10:17:03 T extends Object declared in class Class
10:17:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
10:17:03 T copy = (T) obj.getClass().newInstance();
10:17:03 ^
10:17:03 where T is a type-variable:
10:17:03 T extends Object declared in class Class
10:17:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
10:17:03 RawAccessRequest raw = new RawAccessRequest();
10:17:03 ^
10:17:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
10:17:03 RawAccessRequest raw = new RawAccessRequest();
10:17:03 ^
10:17:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
10:17:03 raw.repoUuid = legacy.root().getHash().getValue();
10:17:03 ^
10:17:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
10:17:03 raw.command = "rm";
10:17:03 ^
10:17:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
10:17:03 raw.args = Arrays.asList(path);
10:17:03 ^
10:17:04/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
10:17:04 final IObject link = linkClass.newInstance();
10:17:04 ^
10:17:04 where T is a type-variable:
10:17:04 T extends Object declared in class Class
10:17:04/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
10:17:04 originalLink.setChild(annotationClass.newInstance());
10:17:04 ^
10:17:04 where T is a type-variable:
10:17:04 T extends Object declared in class Class
10:17:04/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
10:17:04 RoiResult r = svc.findByImage(id, new RoiOptions());
10:17:04 ^
10:17:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
10:17:05 final RawAccessRequest request = new RawAccessRequest();
10:17:05 ^
10:17:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
10:17:05 final RawAccessRequest request = new RawAccessRequest();
10:17:05 ^
10:17:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
10:17:05 request.repoUuid = repo.root().getHash().getValue();
10:17:05 ^
10:17:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
10:17:05 request.command = "exists";
10:17:05 ^
10:17:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
10:17:05 request.args = Collections.singletonList(dirPath);
10:17:05 ^
10:17:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
10:17:05 final RawAccessRequest request = new RawAccessRequest();
10:17:05 ^
10:17:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
10:17:05 final RawAccessRequest request = new RawAccessRequest();
10:17:05 ^
10:17:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
10:17:05 request.repoUuid = repo.root().getHash().getValue();
10:17:05 ^
10:17:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
10:17:05 request.command = "exists";
10:17:05 ^
10:17:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
10:17:05 request.args = Collections.singletonList(dirName);
10:17:05 ^
10:17:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
10:17:05 final ImportJob importJob = new ImportJobI();
10:17:05 ^
10:17:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
10:17:05 final ImportJob importJob = new ImportJobI();
10:17:05 ^
10:17:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
10:17:05 importJob.setImageName(omero.rtypes.rstring(name));
10:17:05 ^
10:17:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
10:17:05 importJob.setImageDescription(omero.rtypes.rstring(desc));
10:17:05 ^
10:17:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
10:17:05 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
10:17:05 ^
10:17:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
10:17:05 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
10:17:05 ^
10:17:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
10:17:05 final String savedName = sent.getImageName().getValue().toString();
10:17:05 ^
10:17:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
10:17:05 final String savedDesc = sent.getImageDescription().getValue().toString();
10:17:05 ^
10:17:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
10:17:05 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
10:17:05 ^
10:17:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
10:17:05 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
10:17:05 ^
10:17:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
10:17:05 final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
10:17:05 ^
10:17:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
10:17:05 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
10:17:05 ^
10:17:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
10:17:06 RoiResult r = svc.findByImage(image.getId().getValue(),
10:17:06 ^
10:17:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
10:17:06 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
10:17:06 ^
10:17:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
10:17:06 l = svc.getRoiMeasurements(image.getId().getValue(), options);
10:17:06 ^
10:17:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
10:17:06 l = svc.getRoiMeasurements(image.getId().getValue(), options);
10:17:06 ^
10:17:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
10:17:06 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
10:17:06 ^
10:17:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
10:17:06 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
10:17:06 ^
10:17:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
10:17:06 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
10:17:06 ^
10:17:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
10:17:06 table = svc.getTable(f.getId().getValue());
10:17:06 ^
10:17:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
10:17:06 RoiResult r = svc.findByImage(image.getId().getValue(),
10:17:06 ^
10:17:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
10:17:06 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
10:17:06 ^
10:17:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
10:17:06 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
10:17:06 ^
10:17:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
10:17:06 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
10:17:06 ^
10:17:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
10:17:06 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
10:17:06 ^
10:17:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
10:17:06 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
10:17:06 ^
10:17:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
10:17:06 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
10:17:06 ^
10:17:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
10:17:06 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
10:17:06 ^
10:17:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
10:17:06 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
10:17:06 ^
10:17:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Long(long) in Long has been deprecated
10:17:06 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
10:17:06 ^
10:17:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
10:17:06 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
10:17:06 ^
10:17:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
10:17:06 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
10:17:06 ^
10:17:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
10:17:06 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
10:17:06 ^
10:17:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
10:17:06 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
10:17:06 ^
10:17:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
10:17:06 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
10:17:06 ^
10:17:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
10:17:06 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
10:17:06 ^
10:17:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
10:17:06 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
10:17:06 ^
10:17:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
10:17:06 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
10:17:06 ^
10:17:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
10:17:06 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
10:17:06 ^
10:17:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
10:17:06 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
10:17:06 ^
10:17:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
10:17:06 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
10:17:06 ^
10:17:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
10:17:06 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
10:17:06 ^
10:17:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
10:17:06 svc.getShapeStatsRestricted(
10:17:06 ^
10:17:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
10:17:06 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
10:17:06 ^
10:17:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
10:17:06 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
10:17:06 ^
10:17:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
10:17:06 request.typesToIgnore = Collections.singletonList("TagAnnotation");
10:17:06 ^
10:17:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
10:17:06 request.typesToIgnore = Collections.singletonList("IAnnotationLink");
10:17:06 ^
10:17:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
10:17:06 request.typesToIgnore = Collections.singletonList("Annotation");
10:17:06 ^
10:17:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
10:17:06 request.typesToIgnore = Collections.singletonList("Annotation");
10:17:06 ^
10:17:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
10:17:06 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
10:17:06 ^
10:17:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
10:17:06 p2.setRelatedTo(p1);
10:17:06 ^
10:17:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
10:17:06 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
10:17:06 ^
10:17:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
10:17:06 pixels1.setRelatedTo(pixels2);
10:17:06 ^
10:17:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
10:17:06 Pixels pixels = pixels1.getRelatedTo();
10:17:06 ^
10:17:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
10:17:06 Assert.assertNull(pixels1.getRelatedTo());
10:17:06 ^
10:17:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
10:17:06 pixels1.setRelatedTo(pixels2);
10:17:06 ^
10:17:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
10:17:06 Pixels pixels = pixels1.getRelatedTo();
10:17:06 ^
10:17:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
10:17:06 Assert.assertNull(pixels1.getRelatedTo());
10:17:06 ^
10:17:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
10:17:06 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
10:17:06 ^
10:17:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
10:17:06 l = svc.getRoiMeasurements(image.getId().getValue(), options);
10:17:06 ^
10:17:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
10:17:06 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
10:17:06 ^
10:17:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
10:17:06 l = svc.getRoiMeasurements(image.getId().getValue(), options);
10:17:06 ^
10:17:06Note: Some input files use unchecked or unsafe operations.
10:17:06Note: Recompile with -Xlint:unchecked for details.
10:17:0688 warnings
10:17:07Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_1339783108.tmp
10:17:07Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar
10:17:07:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
10:17:07:: delivering :: omero#OmeroJava-test;working@121c5c9aa309 :: 5.6.3-487-8d06c82248-ice36 :: integration :: Thu Jul 25 10:16:52 UTC 2024
10:17:07 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml
10:17:07:: publishing :: omero#OmeroJava-test
10:17:07 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-487-8d06c82248-ice36.jar
10:17:07 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-487-8d06c82248-ice36.xml
10:17:0710:17:07build-eclipse:
10:17:07No sub-builds to iterate on
10:17:07Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
10:17:0710:17:07retrieve:
10:17:07:: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ ::
10:17:07:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
10:17:1010:17:10prepare:
10:17:10Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
10:17:1210:17:12release-clients:
10:17:12Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-487-8d06c82248-ice36.zip
10:17:1810:17:18release-zip:
10:17:18Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-487-8d06c82248-ice36.zip
10:17:3110:17:31BUILD SUCCESSFUL
10:17:31Total time: 1 minute 21 seconds
10:17:31++ '[' -d .git ']'
10:17:31++ python3 ./build.py release-src
10:17:31OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0
10:17:31Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
10:17:3110:17:31release-src-git:
10:17:31Releasing openmicroscopy-5.6.3-487-8d06c82248-ice36
10:17:33 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-487-8d06c82248-ice36.zip
10:17:33 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-487-8d06c82248-ice36-base.zip
10:17:3410:17:34BUILD SUCCESSFUL
10:17:34Total time: 3 seconds
10:17:34++ echo BUILD_NUMBER=129
10:17:34++ echo OMERO_BRANCH=merge_ci
10:17:34++ git_info
10:17:34+++ git rev-parse HEAD
10:17:34++ HEAD=8d06c82248c8a50a87e4bdbe7927736168cb1157
10:17:34++ git log --max-count=1 8d06c82248c8a50a87e4bdbe7927736168cb1157
10:17:34++ env
10:17:34++ sort
10:17:34Archiving artifacts
10:18:05Finished: SUCCESS
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