11:09:05Started by upstream project "Trigger" build number 15811:09:05originally caused by:
11:09:05 Started by user devspace11:09:05Running as SYSTEM
11:09:05Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
11:09:05The recommended git tool is: NONE
11:09:05No credentials specified
11:09:05 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10
11:09:05Fetching changes from the remote Git repository
11:09:05 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
11:09:05Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git11:09:05 > git --version # timeout=10
11:09:05 > git --version # 'git version 2.47.3'
11:09:05 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
11:09:05 > git rev-parse origin/merge_ci^{commit} # timeout=10
11:09:05Checking out Revision b51737ada9abc26cb19d26875eb7782d0323df53 (origin/merge_ci)
11:09:05 > git config core.sparsecheckout # timeout=10
11:09:05 > git checkout -f b51737ada9abc26cb19d26875eb7782d0323df53 # timeout=10
11:09:05Commit message: "Add version.properties to etc/omero.properties"
11:09:05 > git rev-list --no-walk 562ebf0a4db662b591eb5b41827f011e94bdde5e # timeout=10
11:09:05Cleaning workspace
11:09:05 > git rev-parse --verify HEAD # timeout=10
11:09:05Resetting working tree
11:09:05 > git reset --hard # timeout=10
11:09:05 > git clean -fdx # timeout=10
11:09:06Copied 6 artifacts from "OMERO-python-superbuild-build" build number 12011:09:06Copied 3 artifacts from "omero-zarr-pixel-buffer-build" build number 1111:09:06[OMERO-build] $ /bin/bash -xe /tmp/jenkins4389968827798587952.sh
11:09:06+ mv omero-scripts/dist/omero_scripts-5.10.1.dev0.tar.gz .
11:09:06+ mv omero-zarr-pixel-buffer-0.6.2-SNAPSHOT.jar omero-zarr-pixel-buffer-0.6.2-SNAPSHOT-javadoc.jar omero-zarr-pixel-buffer-0.6.2-SNAPSHOT-sources.jar src/lib/repository
11:09:06+ cd src
11:09:06+ export OMERO_BRANCH=merge_ci
11:09:06+ OMERO_BRANCH=merge_ci
11:09:06+ OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
11:09:06+ rm -rf /home/omero/workspace/OMERO-build/omero-virtualenv
11:09:06+ source /home/omero/settings.env
11:09:06++ OMERO_DB_HOST=pg
11:09:06++ OMERO_DB_USER=postgres
11:09:06++ OMERO_DB_PASS=
11:09:06++ OMERO_ROOT_PASS=omero
11:09:06++ OMERO_DATA_DIR=/OMERO
11:09:06++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
11:09:06+ python3.11 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
11:09:09+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl11:09:10Collecting zeroc-ice==3.6.5
11:09:10 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
11:09:13 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 12.6 MB/s eta 0:00:00
11:09:13Installing collected packages: zeroc-ice
11:09:14Successfully installed zeroc-ice-3.6.5
11:09:1411:09:14[notice] A new release of pip available: 22.3.1 -> 26.0.1
11:09:14[notice] To update, run: python3.11 -m pip install --upgrade pip
11:09:14+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U 'setuptools<66' omero-py
11:09:14Requirement already satisfied: setuptools<66 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (65.5.1)
11:09:14Collecting setuptools<66
11:09:14 Using cached setuptools-65.7.0-py3-none-any.whl (1.2 MB)
11:09:14Collecting omero-py
11:09:14 Using cached omero_py-5.22.1-py3-none-any.whl (2.8 MB)
11:09:14Collecting appdirs
11:09:14 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
11:09:14Collecting future
11:09:14 Using cached future-1.0.0-py3-none-any.whl (491 kB)
11:09:15Collecting numpy<3,>=2
11:09:15 Using cached numpy-2.4.4-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB)
11:09:16Collecting Pillow>=10.0.0
11:09:16 Using cached pillow-12.2.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (7.1 MB)
11:09:16Collecting PyYAML
11:09:16 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB)
11:09:16Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (from omero-py) (3.6.5)
11:09:16Collecting requests
11:09:16 Using cached requests-2.33.1-py3-none-any.whl (64 kB)
11:09:16Collecting portalocker
11:09:16 Using cached portalocker-3.2.0-py3-none-any.whl (22 kB)
11:09:16Collecting charset_normalizer<4,>=2
11:09:16 Using cached charset_normalizer-3.4.7-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (214 kB)
11:09:16Collecting idna<4,>=2.5
11:09:16 Using cached idna-3.11-py3-none-any.whl (71 kB)
11:09:16Collecting urllib3<3,>=1.26
11:09:16 Using cached urllib3-2.6.3-py3-none-any.whl (131 kB)
11:09:16Collecting certifi>=2023.5.7
11:09:16 Using cached certifi-2026.2.25-py3-none-any.whl (153 kB)
11:09:17Installing collected packages: appdirs, urllib3, setuptools, PyYAML, portalocker, Pillow, numpy, idna, future, charset_normalizer, certifi, requests, omero-py
11:09:17 Attempting uninstall: setuptools
11:09:17 Found existing installation: setuptools 65.5.1
11:09:17 Uninstalling setuptools-65.5.1:
11:09:17 Successfully uninstalled setuptools-65.5.1
11:09:22Successfully installed Pillow-12.2.0 PyYAML-6.0.3 appdirs-1.4.4 certifi-2026.2.25 charset_normalizer-3.4.7 future-1.0.0 idna-3.11 numpy-2.4.4 omero-py-5.22.1 portalocker-3.2.0 requests-2.33.1 setuptools-65.7.0 urllib3-2.6.3
11:09:2211:09:22[notice] A new release of pip available: 22.3.1 -> 26.0.1
11:09:22[notice] To update, run: python3.11 -m pip install --upgrade pip
11:09:22+ source /home/omero/workspace/OMERO-build/omero-virtualenv/bin/activate
11:09:22++ deactivate nondestructive
11:09:22++ '[' -n '' ']'
11:09:22++ '[' -n '' ']'
11:09:22++ hash -r
11:09:22++ '[' -n '' ']'
11:09:22++ unset VIRTUAL_ENV
11:09:22++ unset VIRTUAL_ENV_PROMPT
11:09:22++ '[' '!' nondestructive = nondestructive ']'
11:09:22++ VIRTUAL_ENV=/home/omero/workspace/OMERO-build/omero-virtualenv
11:09:22++ export VIRTUAL_ENV
11:09:22++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
11:09:22++ PATH=/home/omero/workspace/OMERO-build/omero-virtualenv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
11:09:22++ export PATH
11:09:22++ '[' -n '' ']'
11:09:22++ '[' -z '' ']'
11:09:22++ _OLD_VIRTUAL_PS1=
11:09:22++ PS1='(omero-virtualenv) '
11:09:22++ export PS1
11:09:22++ VIRTUAL_ENV_PROMPT='(omero-virtualenv) '
11:09:22++ export VIRTUAL_ENV_PROMPT
11:09:22++ hash -r
11:09:22+ source docs/hudson/OMERO.sh
11:09:22++ set -e
11:09:22++ set -u
11:09:22++ set -x
11:09:22++ source docs/hudson/functions.sh
11:09:22++ echo Building merge_ci
11:09:22Building merge_ci
11:09:22++ python3 ./build.py build-dev release-all
11:09:22Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
11:09:2311:09:23check-ivy:
11:09:23Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
11:09:23Created dir: /home/omero/workspace/OMERO-build/src/target
11:09:23:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
11:09:23:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
11:09:2311:09:23build-scons:
11:09:23Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
11:09:23No sub-builds to iterate on
11:09:24Entering /home/omero/workspace/OMERO-build/src/components/tools...
11:09:2411:09:24buildlist:
11:09:24:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
11:09:24:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
11:09:2411:09:24clean:
11:09:24Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
11:09:24Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
11:09:2411:09:24python-clean:
11:09:24WARNING: '' not a valid package name; please use only .-separated package names in setup.py
11:09:24/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-597-b51737ada9-ice36-b129') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
11:09:24 warnings.warn(
11:09:24running clean
11:09:24Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
11:09:24Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
11:09:2511:09:25python-clean:
11:09:25WARNING: '' not a valid package name; please use only .-separated package names in setup.py
11:09:25/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-597-b51737ada9-ice36-b129') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
11:09:25 warnings.warn(
11:09:25running clean
11:09:25Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
11:09:25Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
11:09:25Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
11:09:25Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
11:09:2511:09:25python-clean:
11:09:25WARNING: '' not a valid package name; please use only .-separated package names in setup.py
11:09:25/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-597-b51737ada9-ice36-b129') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
11:09:25 warnings.warn(
11:09:25running clean
11:09:25Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
11:09:25Deleting directory /home/omero/workspace/OMERO-build/src/target
11:09:2511:09:25build-scons:
11:09:25Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
11:09:2511:09:25build:
11:09:25No sub-builds to iterate on
11:09:25Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
11:09:25Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
11:09:25Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
11:09:25Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
11:09:2511:09:25tools-init:
11:09:25no-op
11:09:2611:09:26retrieve:
11:09:26:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
11:09:26:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
11:10:3611:10:36prepare:
11:10:36Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
11:10:36Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
11:10:36Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
11:10:36Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
11:10:36Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
11:10:36Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
11:10:36Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
11:10:36Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
11:10:36Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
11:10:36Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
11:10:36Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
11:10:36Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
11:10:36Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
11:10:36Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
11:10:36Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
11:10:3611:10:36pre-compile:
11:10:36Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
11:10:36Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
11:10:36Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
11:10:36Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
11:10:36Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
11:10:3611:10:36compile:
11:10:36no-op
11:10:3611:10:36package:
11:10:36Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
11:10:3711:10:37install:
11:10:37:: delivering :: omero#omero_client;working@012a2a74efc3 :: 5.6.3-597-b51737ada9-ice36-b129 :: integration :: Fri Apr 17 11:09:25 UTC 2026
11:10:37 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
11:10:37:: publishing :: omero#omero_client
11:10:37 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-597-b51737ada9-ice36-b129/omero_client-5.6.3-597-b51737ada9-ice36-b129.jar
11:10:37 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-597-b51737ada9-ice36-b129/omero_client-5.6.3-597-b51737ada9-ice36-b129.xml
11:10:37Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
11:10:37Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
11:10:3711:10:37retrieve:
11:10:37:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
11:10:37:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
11:10:37Entering /home/omero/workspace/OMERO-build/src/components/tools...
11:10:3711:10:37dist:
11:10:37Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
11:10:37Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
11:10:37Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
11:10:37Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.10.1.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
11:10:37Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
11:10:37Copying 29 files to /home/omero/workspace/OMERO-build/src/dist
11:10:37Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
11:10:38Entering /home/omero/workspace/OMERO-build/src/components/tests...
11:10:38Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
11:10:3811:10:38copy-licenses:
11:10:38Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
11:10:38Created dir: /home/omero/workspace/OMERO-build/src/dist/share
11:10:38Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
11:10:3811:10:38copy-history:
11:10:38Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
11:10:3811:10:38copy-etc:
11:10:38Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
11:10:38Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
11:10:3811:10:38copy-sql:
11:10:38Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
11:10:4711:10:47copy-server:
11:10:47 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.1.9 won
11:10:4711:10:47copy-client:
11:10:47Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
11:10:48 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.1.9 won
11:10:4911:10:49update-version:
11:10:49Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
11:10:4911:10:49create-workdirs:
11:10:49Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
11:10:49Created dir: /home/omero/workspace/OMERO-build/src/dist/var
11:10:49Created dir: /home/omero/workspace/OMERO-build/src/dist/var/tmp
11:10:4911:10:49copy-luts:
11:10:49Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
11:10:49Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
11:10:4911:10:49test-compile:
11:10:49:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
11:10:49Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
11:10:49Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
11:10:49Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
11:10:49Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
11:10:49Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
11:10:49Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
11:10:49Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
11:10:4911:10:49testng-init:
11:10:49:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
11:10:49:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
11:10:5211:10:51,963 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.16
11:10:5211:10:51,966 |-INFO in ch.qos.logback.classic.util.ContextInitializer@19f8c830 - No custom configurators were discovered as a service.
11:10:5211:10:51,966 |-INFO in ch.qos.logback.classic.util.ContextInitializer@19f8c830 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
11:10:5211:10:51,969 |-INFO in ch.qos.logback.classic.util.ContextInitializer@19f8c830 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
11:10:5211:10:51,969 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
11:10:5211:10:51,969 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
11:10:5211:10:51,970 |-INFO in ch.qos.logback.classic.util.ContextInitializer@19f8c830 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
11:10:5211:10:51,970 |-INFO in ch.qos.logback.classic.util.ContextInitializer@19f8c830 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
11:10:5211:10:51,971 |-INFO in ch.qos.logback.classic.util.ContextInitializer@19f8c830 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
11:10:5211:10:51,972 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
11:10:5211:10:51,972 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
11:10:5211:10:51,973 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@442ca132 - Resource [logback.xml] occurs multiple times on the classpath.
11:10:5211:10:51,973 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@442ca132 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
11:10:5211:10:51,973 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@442ca132 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
11:10:5211:10:52,168 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
11:10:5211:10:52,168 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
11:10:5211:10:52,185 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
11:10:5211:10:52,186 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@2174acc0 - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
11:10:5211:10:52,186 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@2174acc0 - Please move "immediateFlush" property into the enclosing appender.
11:10:5211:10:52,241 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@2174acc0 - Setting the "immediateFlush" property of the enclosing appender to true
11:10:5211:10:52,241 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
11:10:5211:10:52,241 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
11:10:5211:10:52,241 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
11:10:5211:10:52,241 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
11:10:5211:10:52,241 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
11:10:5211:10:52,242 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
11:10:5211:10:52,243 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@11b59291 - End of configuration.
11:10:5211:10:52,244 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@4e5361df - Registering current configuration as safe fallback point
11:10:5211:10:52,244 |-INFO in ch.qos.logback.classic.util.ContextInitializer@19f8c830 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 273 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
11:10:5211:10:52lifecycle.test-compile:
11:10:52Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
11:10:52Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
11:10:52warning: [options] bootstrap class path not set in conjunction with -source 8
11:10:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
11:10:53import omero.grid.RawAccessRequest;
11:10:53 ^
11:10:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
11:10:53import omero.grid.RawAccessRequest;
11:10:53 ^
11:10:54/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
11:10:54import omero.grid.RawAccessRequest;
11:10:54 ^
11:10:54/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
11:10:54import omero.model.ImportJob;
11:10:54 ^
11:10:54/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
11:10:54import omero.model.ImportJobI;
11:10:54 ^
11:10:54/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated
11:10:54 IObject link = (IObject) linkClass.newInstance();
11:10:54 ^
11:10:54 where T is a type-variable:
11:10:54 T extends Object declared in class Class
11:10:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
11:10:55 T copy = (T) obj.getClass().newInstance();
11:10:55 ^
11:10:55 where T is a type-variable:
11:10:55 T extends Object declared in class Class
11:10:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
11:10:55 RawAccessRequest raw = new RawAccessRequest();
11:10:55 ^
11:10:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
11:10:55 RawAccessRequest raw = new RawAccessRequest();
11:10:55 ^
11:10:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
11:10:55 raw.repoUuid = legacy.root().getHash().getValue();
11:10:55 ^
11:10:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
11:10:55 raw.command = "rm";
11:10:55 ^
11:10:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
11:10:55 raw.args = Arrays.asList(path);
11:10:55 ^
11:10:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
11:10:55 final IObject link = linkClass.newInstance();
11:10:55 ^
11:10:55 where T is a type-variable:
11:10:55 T extends Object declared in class Class
11:10:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
11:10:55 originalLink.setChild(annotationClass.newInstance());
11:10:55 ^
11:10:55 where T is a type-variable:
11:10:55 T extends Object declared in class Class
11:10:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
11:10:55 RoiResult r = svc.findByImage(id, new RoiOptions());
11:10:55 ^
11:10:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
11:10:56 final RawAccessRequest request = new RawAccessRequest();
11:10:56 ^
11:10:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
11:10:56 final RawAccessRequest request = new RawAccessRequest();
11:10:56 ^
11:10:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
11:10:56 request.repoUuid = repo.root().getHash().getValue();
11:10:56 ^
11:10:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
11:10:56 request.command = "exists";
11:10:56 ^
11:10:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
11:10:56 request.args = Collections.singletonList(dirPath);
11:10:56 ^
11:10:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
11:10:56 final RawAccessRequest request = new RawAccessRequest();
11:10:56 ^
11:10:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
11:10:56 final RawAccessRequest request = new RawAccessRequest();
11:10:56 ^
11:10:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
11:10:56 request.repoUuid = repo.root().getHash().getValue();
11:10:56 ^
11:10:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
11:10:56 request.command = "exists";
11:10:56 ^
11:10:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
11:10:56 request.args = Collections.singletonList(dirName);
11:10:56 ^
11:10:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
11:10:56 final ImportJob importJob = new ImportJobI();
11:10:56 ^
11:10:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
11:10:56 final ImportJob importJob = new ImportJobI();
11:10:56 ^
11:10:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
11:10:56 importJob.setImageName(omero.rtypes.rstring(name));
11:10:56 ^
11:10:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
11:10:56 importJob.setImageDescription(omero.rtypes.rstring(desc));
11:10:56 ^
11:10:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
11:10:56 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
11:10:56 ^
11:10:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
11:10:56 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
11:10:56 ^
11:10:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
11:10:56 final String savedName = sent.getImageName().getValue().toString();
11:10:56 ^
11:10:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
11:10:56 final String savedDesc = sent.getImageDescription().getValue().toString();
11:10:56 ^
11:10:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
11:10:56 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
11:10:56 ^
11:10:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
11:10:56 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
11:10:56 ^
11:10:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
11:10:56 final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
11:10:56 ^
11:10:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
11:10:56 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
11:10:56 ^
11:10:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
11:10:56 RoiResult r = svc.findByImage(image.getId().getValue(),
11:10:56 ^
11:10:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
11:10:56 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
11:10:56 ^
11:10:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
11:10:56 l = svc.getRoiMeasurements(image.getId().getValue(), options);
11:10:56 ^
11:10:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
11:10:56 l = svc.getRoiMeasurements(image.getId().getValue(), options);
11:10:56 ^
11:10:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
11:10:56 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
11:10:56 ^
11:10:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
11:10:56 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
11:10:56 ^
11:10:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
11:10:56 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
11:10:56 ^
11:10:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
11:10:56 table = svc.getTable(f.getId().getValue());
11:10:56 ^
11:10:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
11:10:56 RoiResult r = svc.findByImage(image.getId().getValue(),
11:10:56 ^
11:10:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
11:10:56 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
11:10:56 ^
11:10:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
11:10:56 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
11:10:56 ^
11:10:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
11:10:56 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
11:10:56 ^
11:10:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
11:10:56 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
11:10:56 ^
11:10:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
11:10:56 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
11:10:56 ^
11:10:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
11:10:56 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
11:10:56 ^
11:10:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
11:10:56 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
11:10:56 ^
11:10:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
11:10:56 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
11:10:56 ^
11:10:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Long(long) in Long has been deprecated and marked for removal
11:10:56 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
11:10:56 ^
11:10:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
11:10:56 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
11:10:56 ^
11:10:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
11:10:56 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
11:10:56 ^
11:10:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
11:10:56 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
11:10:56 ^
11:10:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
11:10:56 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
11:10:56 ^
11:10:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
11:10:56 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
11:10:56 ^
11:10:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
11:10:56 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
11:10:56 ^
11:10:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
11:10:56 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
11:10:56 ^
11:10:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
11:10:56 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
11:10:56 ^
11:10:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
11:10:56 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
11:10:56 ^
11:10:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
11:10:56 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
11:10:56 ^
11:10:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
11:10:56 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
11:10:56 ^
11:10:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
11:10:56 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
11:10:56 ^
11:10:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
11:10:56 svc.getShapeStatsRestricted(
11:10:56 ^
11:10:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
11:10:56 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
11:10:56 ^
11:10:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
11:10:56 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
11:10:56 ^
11:10:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
11:10:56 request.typesToIgnore = Collections.singletonList("TagAnnotation");
11:10:56 ^
11:10:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
11:10:56 request.typesToIgnore = Collections.singletonList("IAnnotationLink");
11:10:56 ^
11:10:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
11:10:56 request.typesToIgnore = Collections.singletonList("Annotation");
11:10:56 ^
11:10:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
11:10:56 request.typesToIgnore = Collections.singletonList("Annotation");
11:10:56 ^
11:10:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
11:10:56 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
11:10:56 ^
11:10:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
11:10:56 p2.setRelatedTo(p1);
11:10:56 ^
11:10:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
11:10:56 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
11:10:56 ^
11:10:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
11:10:56 pixels1.setRelatedTo(pixels2);
11:10:56 ^
11:10:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
11:10:56 Pixels pixels = pixels1.getRelatedTo();
11:10:56 ^
11:10:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
11:10:56 Assert.assertNull(pixels1.getRelatedTo());
11:10:56 ^
11:10:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
11:10:56 pixels1.setRelatedTo(pixels2);
11:10:56 ^
11:10:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
11:10:56 Pixels pixels = pixels1.getRelatedTo();
11:10:56 ^
11:10:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
11:10:56 Assert.assertNull(pixels1.getRelatedTo());
11:10:56 ^
11:10:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
11:10:56 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
11:10:56 ^
11:10:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
11:10:56 l = svc.getRoiMeasurements(image.getId().getValue(), options);
11:10:56 ^
11:10:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
11:10:56 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
11:10:56 ^
11:10:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
11:10:56 l = svc.getRoiMeasurements(image.getId().getValue(), options);
11:10:56 ^
11:10:57Note: Some input files use unchecked or unsafe operations.
11:10:57Note: Recompile with -Xlint:unchecked for details.
11:10:5788 warnings
11:10:57Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_868476752.tmp
11:10:57Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar
11:10:57:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
11:10:57:: delivering :: omero#OmeroJava-test;working@012a2a74efc3 :: 5.6.3-597-b51737ada9-ice36-b129 :: integration :: Fri Apr 17 11:10:49 UTC 2026
11:10:57 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml
11:10:57:: publishing :: omero#OmeroJava-test
11:10:57 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-597-b51737ada9-ice36-b129.jar
11:10:57 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-597-b51737ada9-ice36-b129.xml
11:10:5711:10:57build-eclipse:
11:10:57No sub-builds to iterate on
11:10:57Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
11:10:5711:10:57retrieve:
11:10:57:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
11:10:57:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
11:10:5911:10:59prepare:
11:10:59Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
11:11:0011:11:00release-clients:
11:11:00Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-597-b51737ada9-ice36-b129.zip
11:11:0511:11:05release-zip:
11:11:05Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-597-b51737ada9-ice36-b129.zip
11:11:1511:11:15BUILD SUCCESSFUL
11:11:15Total time: 1 minute 52 seconds
11:11:15++ '[' -d .git ']'
11:11:15++ python3 ./build.py release-src
11:11:15Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
11:11:1511:11:15release-src-git:
11:11:15Releasing openmicroscopy-5.6.3-597-b51737ada9-ice36-b129
11:11:17 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-597-b51737ada9-ice36-b129.zip
11:11:17 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-597-b51737ada9-ice36-b129-base.zip
11:11:1811:11:18BUILD SUCCESSFUL
11:11:18Total time: 3 seconds
11:11:18++ echo BUILD_NUMBER=129
11:11:18++ echo OMERO_BRANCH=merge_ci
11:11:18++ git_info
11:11:18+++ git rev-parse HEAD
11:11:18++ HEAD=b51737ada9abc26cb19d26875eb7782d0323df53
11:11:18++ git log --max-count=1 b51737ada9abc26cb19d26875eb7782d0323df53
11:11:18++ env
11:11:18++ sort
11:11:18Archiving artifacts
11:11:34Finished: SUCCESS
