09:13:46Started by upstream project "Trigger" build number 16609:13:46originally caused by:
09:13:46 Started by user devspace09:13:46Running as SYSTEM
09:13:46Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
09:13:46The recommended git tool is: NONE
09:13:46No credentials specified
09:13:46Cloning the remote Git repository
09:13:46Cloning repository https://github.com/snoopycrimecop/openmicroscopy.git09:13:46 > git init /home/omero/workspace/OMERO-build/src # timeout=10
09:13:46Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git09:13:46 > git --version # timeout=10
09:13:46 > git --version # 'git version 2.47.3'
09:13:46 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
09:16:16 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
09:16:16 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10
09:16:16Avoid second fetch
09:16:16 > git rev-parse origin/merge_ci^{commit} # timeout=10
09:16:16Checking out Revision db222df6ad8a04380eacc7a46671993da4aba5a2 (origin/merge_ci)
09:16:16 > git config core.sparsecheckout # timeout=10
09:16:16 > git checkout -f db222df6ad8a04380eacc7a46671993da4aba5a2 # timeout=10
09:16:16Commit message: "Add version.properties to etc/omero.properties"
09:16:16 > git rev-list --no-walk b51737ada9abc26cb19d26875eb7782d0323df53 # timeout=10
09:16:16First time build. Skipping changelog.
09:16:16Cleaning workspace
09:16:16 > git rev-parse --verify HEAD # timeout=10
09:16:16Resetting working tree
09:16:16 > git reset --hard # timeout=10
09:16:16 > git clean -fdx # timeout=10
09:16:17Copied 6 artifacts from "OMERO-python-superbuild-build" build number 12109:16:17[OMERO-build] $ /bin/bash -xe /tmp/jenkins4314846601358602367.sh
09:16:17+ mv omero-scripts/dist/omero_scripts-5.10.1.dev0.tar.gz .
09:16:17+ cd src
09:16:17+ export OMERO_BRANCH=merge_ci
09:16:17+ OMERO_BRANCH=merge_ci
09:16:17+ OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
09:16:17+ rm -rf /home/omero/workspace/OMERO-build/omero-virtualenv
09:16:17+ source /home/omero/settings.env
09:16:17++ OMERO_DB_HOST=pg
09:16:17++ OMERO_DB_USER=postgres
09:16:17++ OMERO_DB_PASS=
09:16:17++ OMERO_ROOT_PASS=omero
09:16:17++ OMERO_DATA_DIR=/OMERO
09:16:17++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
09:16:17+ python3.11 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
09:16:20+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl09:16:20Collecting zeroc-ice==3.6.5
09:16:21 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
09:16:23 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 12.9 MB/s eta 0:00:00
09:16:23Installing collected packages: zeroc-ice
09:16:24Successfully installed zeroc-ice-3.6.5
09:16:2409:16:24[notice] A new release of pip available: 22.3.1 -> 26.0.1
09:16:24[notice] To update, run: python3.11 -m pip install --upgrade pip
09:16:24+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U 'setuptools<66' omero-py
09:16:25Requirement already satisfied: setuptools<66 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (65.5.1)
09:16:25Collecting setuptools<66
09:16:25 Using cached setuptools-65.7.0-py3-none-any.whl (1.2 MB)
09:16:25Collecting omero-py
09:16:25 Using cached omero_py-5.22.1-py3-none-any.whl (2.8 MB)
09:16:25Collecting appdirs
09:16:25 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
09:16:25Collecting future
09:16:25 Using cached future-1.0.0-py3-none-any.whl (491 kB)
09:16:26Collecting numpy<3,>=2
09:16:26 Using cached numpy-2.4.4-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB)
09:16:26Collecting Pillow>=10.0.0
09:16:27 Using cached pillow-12.2.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (7.1 MB)
09:16:27Collecting PyYAML
09:16:27 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB)
09:16:27Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (from omero-py) (3.6.5)
09:16:27Collecting requests
09:16:27 Using cached requests-2.33.1-py3-none-any.whl (64 kB)
09:16:27Collecting portalocker
09:16:27 Using cached portalocker-3.2.0-py3-none-any.whl (22 kB)
09:16:27Collecting charset_normalizer<4,>=2
09:16:27 Using cached charset_normalizer-3.4.7-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (214 kB)
09:16:27Collecting idna<4,>=2.5
09:16:27 Using cached idna-3.11-py3-none-any.whl (71 kB)
09:16:27Collecting urllib3<3,>=1.26
09:16:27 Using cached urllib3-2.6.3-py3-none-any.whl (131 kB)
09:16:27Collecting certifi>=2023.5.7
09:16:27 Using cached certifi-2026.2.25-py3-none-any.whl (153 kB)
09:16:27Installing collected packages: appdirs, urllib3, setuptools, PyYAML, portalocker, Pillow, numpy, idna, future, charset_normalizer, certifi, requests, omero-py
09:16:27 Attempting uninstall: setuptools
09:16:27 Found existing installation: setuptools 65.5.1
09:16:28 Uninstalling setuptools-65.5.1:
09:16:28 Successfully uninstalled setuptools-65.5.1
09:16:33Successfully installed Pillow-12.2.0 PyYAML-6.0.3 appdirs-1.4.4 certifi-2026.2.25 charset_normalizer-3.4.7 future-1.0.0 idna-3.11 numpy-2.4.4 omero-py-5.22.1 portalocker-3.2.0 requests-2.33.1 setuptools-65.7.0 urllib3-2.6.3
09:16:3309:16:33[notice] A new release of pip available: 22.3.1 -> 26.0.1
09:16:33[notice] To update, run: python3.11 -m pip install --upgrade pip
09:16:33+ source /home/omero/workspace/OMERO-build/omero-virtualenv/bin/activate
09:16:33++ deactivate nondestructive
09:16:33++ '[' -n '' ']'
09:16:33++ '[' -n '' ']'
09:16:33++ hash -r
09:16:33++ '[' -n '' ']'
09:16:33++ unset VIRTUAL_ENV
09:16:33++ unset VIRTUAL_ENV_PROMPT
09:16:33++ '[' '!' nondestructive = nondestructive ']'
09:16:33++ VIRTUAL_ENV=/home/omero/workspace/OMERO-build/omero-virtualenv
09:16:33++ export VIRTUAL_ENV
09:16:33++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
09:16:33++ PATH=/home/omero/workspace/OMERO-build/omero-virtualenv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
09:16:33++ export PATH
09:16:33++ '[' -n '' ']'
09:16:33++ '[' -z '' ']'
09:16:33++ _OLD_VIRTUAL_PS1=
09:16:33++ PS1='(omero-virtualenv) '
09:16:33++ export PS1
09:16:33++ VIRTUAL_ENV_PROMPT='(omero-virtualenv) '
09:16:33++ export VIRTUAL_ENV_PROMPT
09:16:33++ hash -r
09:16:33+ source docs/hudson/OMERO.sh
09:16:33++ set -e
09:16:33++ set -u
09:16:33++ set -x
09:16:33++ source docs/hudson/functions.sh
09:16:33++ echo Building merge_ci
09:16:33Building merge_ci
09:16:33++ python3 ./build.py build-dev release-all
09:16:33Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
09:16:3409:16:34check-ivy:
09:16:34Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
09:16:34Created dir: /home/omero/workspace/OMERO-build/src/target
09:16:34:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
09:16:34:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
09:16:3409:16:34build-scons:
09:16:34Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
09:16:35No sub-builds to iterate on
09:16:35Entering /home/omero/workspace/OMERO-build/src/components/tools...
09:16:3509:16:35buildlist:
09:16:35:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
09:16:35:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
09:16:3509:16:35clean:
09:16:35Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
09:16:35Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
09:16:3509:16:35python-clean:
09:16:35WARNING: '' not a valid package name; please use only .-separated package names in setup.py
09:16:35/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-594-db222df6ad-ice36-b130') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
09:16:35 warnings.warn(
09:16:35running clean
09:16:35Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
09:16:35Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
09:16:3609:16:36python-clean:
09:16:36WARNING: '' not a valid package name; please use only .-separated package names in setup.py
09:16:36/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-594-db222df6ad-ice36-b130') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
09:16:36 warnings.warn(
09:16:36running clean
09:16:36Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
09:16:36Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
09:16:36Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
09:16:36Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
09:16:3609:16:36python-clean:
09:16:36WARNING: '' not a valid package name; please use only .-separated package names in setup.py
09:16:36/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-594-db222df6ad-ice36-b130') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
09:16:36 warnings.warn(
09:16:36running clean
09:16:36Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
09:16:36Deleting directory /home/omero/workspace/OMERO-build/src/target
09:16:3609:16:36build-scons:
09:16:36Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
09:16:3609:16:36build:
09:16:36No sub-builds to iterate on
09:16:36Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
09:16:36Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
09:16:36Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
09:16:36Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
09:16:3609:16:36tools-init:
09:16:36no-op
09:16:3709:16:37retrieve:
09:16:37:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
09:16:37:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
09:16:37WARNING: An illegal reflective access operation has occurred
09:16:37WARNING: Illegal reflective access by org.apache.ivy.util.url.IvyAuthenticator (file:/home/omero/workspace/OMERO-build/src/lib/repository/ivy-2.4.0.jar) to field java.net.Authenticator.theAuthenticator
09:16:37WARNING: Please consider reporting this to the maintainers of org.apache.ivy.util.url.IvyAuthenticator
09:16:37WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
09:16:37WARNING: All illegal access operations will be denied in a future release
09:17:4409:17:44prepare:
09:17:44Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
09:17:44Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
09:17:44Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
09:17:44Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
09:17:44Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
09:17:44Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
09:17:44Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
09:17:44Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
09:17:44Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
09:17:44Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
09:17:44Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
09:17:44Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
09:17:44Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
09:17:44Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
09:17:44Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
09:17:4409:17:44pre-compile:
09:17:44Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
09:17:44Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
09:17:44Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
09:17:44Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
09:17:44Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
09:17:4409:17:44compile:
09:17:44no-op
09:17:4409:17:44package:
09:17:44Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
09:17:4509:17:45install:
09:17:45:: delivering :: omero#omero_client;working@012a2a74efc3 :: 5.6.3-594-db222df6ad-ice36-b130 :: integration :: Mon Apr 20 09:16:36 UTC 2026
09:17:45 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
09:17:45:: publishing :: omero#omero_client
09:17:45 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-594-db222df6ad-ice36-b130/omero_client-5.6.3-594-db222df6ad-ice36-b130.jar
09:17:45 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-594-db222df6ad-ice36-b130/omero_client-5.6.3-594-db222df6ad-ice36-b130.xml
09:17:45Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
09:17:45Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
09:17:4509:17:45retrieve:
09:17:45:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
09:17:45:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
09:17:45Entering /home/omero/workspace/OMERO-build/src/components/tools...
09:17:4509:17:45dist:
09:17:45Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
09:17:45Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
09:17:45Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
09:17:45Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.10.1.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
09:17:45Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
09:17:45Copying 29 files to /home/omero/workspace/OMERO-build/src/dist
09:17:45Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
09:17:45Entering /home/omero/workspace/OMERO-build/src/components/tests...
09:17:46Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
09:17:4609:17:46copy-licenses:
09:17:46Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
09:17:46Created dir: /home/omero/workspace/OMERO-build/src/dist/share
09:17:46Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
09:17:4609:17:46copy-history:
09:17:46Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
09:17:4609:17:46copy-etc:
09:17:46Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
09:17:46Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
09:17:4609:17:46copy-sql:
09:17:46Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
09:17:5109:17:51copy-server:
09:17:51 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.1.9 won
09:17:5209:17:52copy-client:
09:17:52Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
09:17:53 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.1.9 won
09:17:5309:17:53update-version:
09:17:53Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
09:17:5309:17:53create-workdirs:
09:17:53Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
09:17:53Created dir: /home/omero/workspace/OMERO-build/src/dist/var
09:17:53Created dir: /home/omero/workspace/OMERO-build/src/dist/var/tmp
09:17:5309:17:53copy-luts:
09:17:53Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
09:17:53Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
09:17:5309:17:53test-compile:
09:17:53:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
09:17:53Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
09:17:53Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
09:17:53Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
09:17:53Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
09:17:53Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
09:17:53Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
09:17:53Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
09:17:5309:17:53testng-init:
09:17:53:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
09:17:53:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
09:17:5609:17:56,504 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.16
09:17:5609:17:56,507 |-INFO in ch.qos.logback.classic.util.ContextInitializer@60362b7 - No custom configurators were discovered as a service.
09:17:5609:17:56,507 |-INFO in ch.qos.logback.classic.util.ContextInitializer@60362b7 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
09:17:5609:17:56,510 |-INFO in ch.qos.logback.classic.util.ContextInitializer@60362b7 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
09:17:5609:17:56,510 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
09:17:5609:17:56,511 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
09:17:5609:17:56,511 |-INFO in ch.qos.logback.classic.util.ContextInitializer@60362b7 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
09:17:5609:17:56,511 |-INFO in ch.qos.logback.classic.util.ContextInitializer@60362b7 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
09:17:5609:17:56,513 |-INFO in ch.qos.logback.classic.util.ContextInitializer@60362b7 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
09:17:5609:17:56,514 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
09:17:5609:17:56,514 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
09:17:5609:17:56,515 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@18809db8 - Resource [logback.xml] occurs multiple times on the classpath.
09:17:5609:17:56,515 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@18809db8 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
09:17:5609:17:56,515 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@18809db8 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
09:17:5609:17:56,712 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
09:17:5609:17:56,712 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
09:17:5609:17:56,731 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
09:17:5609:17:56,732 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@c34e260 - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
09:17:5609:17:56,732 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@c34e260 - Please move "immediateFlush" property into the enclosing appender.
09:17:5609:17:56,792 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@c34e260 - Setting the "immediateFlush" property of the enclosing appender to true
09:17:5609:17:56,793 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
09:17:5609:17:56,793 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
09:17:5609:17:56,793 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
09:17:5609:17:56,793 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
09:17:5609:17:56,793 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
09:17:5609:17:56,793 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
09:17:5609:17:56,794 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@39342312 - End of configuration.
09:17:5609:17:56,796 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@243fe859 - Registering current configuration as safe fallback point
09:17:5609:17:56,796 |-INFO in ch.qos.logback.classic.util.ContextInitializer@60362b7 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 283 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
09:17:5609:17:56lifecycle.test-compile:
09:17:56Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
09:17:56Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
09:17:57warning: [options] bootstrap class path not set in conjunction with -source 8
09:17:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
09:17:58import omero.grid.RawAccessRequest;
09:17:58 ^
09:17:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
09:17:58import omero.grid.RawAccessRequest;
09:17:58 ^
09:17:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
09:17:58import omero.grid.RawAccessRequest;
09:17:58 ^
09:17:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
09:17:58import omero.model.ImportJob;
09:17:58 ^
09:17:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
09:17:58import omero.model.ImportJobI;
09:17:58 ^
09:17:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated
09:17:59 IObject link = (IObject) linkClass.newInstance();
09:17:59 ^
09:17:59 where T is a type-variable:
09:17:59 T extends Object declared in class Class
09:17:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
09:17:59 T copy = (T) obj.getClass().newInstance();
09:17:59 ^
09:17:59 where T is a type-variable:
09:17:59 T extends Object declared in class Class
09:17:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
09:17:59 RawAccessRequest raw = new RawAccessRequest();
09:17:59 ^
09:17:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
09:17:59 RawAccessRequest raw = new RawAccessRequest();
09:17:59 ^
09:17:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
09:17:59 raw.repoUuid = legacy.root().getHash().getValue();
09:17:59 ^
09:17:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
09:17:59 raw.command = "rm";
09:17:59 ^
09:17:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
09:17:59 raw.args = Arrays.asList(path);
09:17:59 ^
09:17:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
09:17:59 final IObject link = linkClass.newInstance();
09:17:59 ^
09:17:59 where T is a type-variable:
09:17:59 T extends Object declared in class Class
09:17:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
09:17:59 originalLink.setChild(annotationClass.newInstance());
09:17:59 ^
09:17:59 where T is a type-variable:
09:17:59 T extends Object declared in class Class
09:18:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
09:18:00 RoiResult r = svc.findByImage(id, new RoiOptions());
09:18:00 ^
09:18:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
09:18:00 final RawAccessRequest request = new RawAccessRequest();
09:18:00 ^
09:18:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
09:18:00 final RawAccessRequest request = new RawAccessRequest();
09:18:00 ^
09:18:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
09:18:00 request.repoUuid = repo.root().getHash().getValue();
09:18:00 ^
09:18:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
09:18:00 request.command = "exists";
09:18:00 ^
09:18:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
09:18:00 request.args = Collections.singletonList(dirPath);
09:18:00 ^
09:18:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
09:18:00 final RawAccessRequest request = new RawAccessRequest();
09:18:00 ^
09:18:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
09:18:00 final RawAccessRequest request = new RawAccessRequest();
09:18:00 ^
09:18:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
09:18:00 request.repoUuid = repo.root().getHash().getValue();
09:18:00 ^
09:18:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
09:18:00 request.command = "exists";
09:18:00 ^
09:18:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
09:18:00 request.args = Collections.singletonList(dirName);
09:18:00 ^
09:18:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
09:18:00 final ImportJob importJob = new ImportJobI();
09:18:00 ^
09:18:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
09:18:00 final ImportJob importJob = new ImportJobI();
09:18:00 ^
09:18:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
09:18:00 importJob.setImageName(omero.rtypes.rstring(name));
09:18:00 ^
09:18:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
09:18:00 importJob.setImageDescription(omero.rtypes.rstring(desc));
09:18:00 ^
09:18:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
09:18:00 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
09:18:00 ^
09:18:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
09:18:00 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
09:18:00 ^
09:18:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
09:18:00 final String savedName = sent.getImageName().getValue().toString();
09:18:00 ^
09:18:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
09:18:00 final String savedDesc = sent.getImageDescription().getValue().toString();
09:18:00 ^
09:18:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
09:18:00 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
09:18:00 ^
09:18:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
09:18:00 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
09:18:00 ^
09:18:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
09:18:00 final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
09:18:00 ^
09:18:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
09:18:00 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
09:18:00 ^
09:18:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
09:18:01 RoiResult r = svc.findByImage(image.getId().getValue(),
09:18:01 ^
09:18:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
09:18:01 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
09:18:01 ^
09:18:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
09:18:01 l = svc.getRoiMeasurements(image.getId().getValue(), options);
09:18:01 ^
09:18:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
09:18:01 l = svc.getRoiMeasurements(image.getId().getValue(), options);
09:18:01 ^
09:18:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
09:18:01 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
09:18:01 ^
09:18:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
09:18:01 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
09:18:01 ^
09:18:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
09:18:01 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
09:18:01 ^
09:18:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
09:18:01 table = svc.getTable(f.getId().getValue());
09:18:01 ^
09:18:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
09:18:01 RoiResult r = svc.findByImage(image.getId().getValue(),
09:18:01 ^
09:18:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
09:18:01 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
09:18:01 ^
09:18:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
09:18:01 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
09:18:01 ^
09:18:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
09:18:01 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
09:18:01 ^
09:18:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
09:18:01 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
09:18:01 ^
09:18:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
09:18:01 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
09:18:01 ^
09:18:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
09:18:01 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
09:18:01 ^
09:18:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
09:18:01 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
09:18:01 ^
09:18:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
09:18:01 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
09:18:01 ^
09:18:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Long(long) in Long has been deprecated
09:18:01 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
09:18:01 ^
09:18:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
09:18:01 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
09:18:01 ^
09:18:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
09:18:01 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
09:18:01 ^
09:18:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
09:18:01 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
09:18:01 ^
09:18:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
09:18:01 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
09:18:01 ^
09:18:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
09:18:01 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
09:18:01 ^
09:18:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
09:18:01 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
09:18:01 ^
09:18:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
09:18:01 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
09:18:01 ^
09:18:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
09:18:01 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
09:18:01 ^
09:18:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
09:18:01 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
09:18:01 ^
09:18:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
09:18:01 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
09:18:01 ^
09:18:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
09:18:01 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
09:18:01 ^
09:18:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
09:18:01 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
09:18:01 ^
09:18:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
09:18:01 svc.getShapeStatsRestricted(
09:18:01 ^
09:18:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
09:18:01 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
09:18:01 ^
09:18:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
09:18:01 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
09:18:01 ^
09:18:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
09:18:01 request.typesToIgnore = Collections.singletonList("TagAnnotation");
09:18:01 ^
09:18:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
09:18:01 request.typesToIgnore = Collections.singletonList("IAnnotationLink");
09:18:01 ^
09:18:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
09:18:01 request.typesToIgnore = Collections.singletonList("Annotation");
09:18:01 ^
09:18:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
09:18:01 request.typesToIgnore = Collections.singletonList("Annotation");
09:18:01 ^
09:18:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
09:18:01 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
09:18:01 ^
09:18:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
09:18:01 p2.setRelatedTo(p1);
09:18:01 ^
09:18:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
09:18:01 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
09:18:01 ^
09:18:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
09:18:01 pixels1.setRelatedTo(pixels2);
09:18:01 ^
09:18:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
09:18:01 Pixels pixels = pixels1.getRelatedTo();
09:18:01 ^
09:18:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
09:18:01 Assert.assertNull(pixels1.getRelatedTo());
09:18:01 ^
09:18:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
09:18:01 pixels1.setRelatedTo(pixels2);
09:18:01 ^
09:18:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
09:18:01 Pixels pixels = pixels1.getRelatedTo();
09:18:01 ^
09:18:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
09:18:01 Assert.assertNull(pixels1.getRelatedTo());
09:18:01 ^
09:18:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
09:18:01 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
09:18:01 ^
09:18:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
09:18:01 l = svc.getRoiMeasurements(image.getId().getValue(), options);
09:18:01 ^
09:18:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
09:18:01 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
09:18:01 ^
09:18:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
09:18:01 l = svc.getRoiMeasurements(image.getId().getValue(), options);
09:18:01 ^
09:18:01Note: Some input files use unchecked or unsafe operations.
09:18:01Note: Recompile with -Xlint:unchecked for details.
09:18:0188 warnings
09:18:01Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_844670813.tmp
09:18:01Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar
09:18:01:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
09:18:01:: delivering :: omero#OmeroJava-test;working@012a2a74efc3 :: 5.6.3-594-db222df6ad-ice36-b130 :: integration :: Mon Apr 20 09:17:53 UTC 2026
09:18:01 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml
09:18:01:: publishing :: omero#OmeroJava-test
09:18:01 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-594-db222df6ad-ice36-b130.jar
09:18:01 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-594-db222df6ad-ice36-b130.xml
09:18:0109:18:01build-eclipse:
09:18:01No sub-builds to iterate on
09:18:01Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
09:18:0209:18:02retrieve:
09:18:02:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
09:18:02:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
09:18:0409:18:04prepare:
09:18:04Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
09:18:0509:18:05release-clients:
09:18:05Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-594-db222df6ad-ice36-b130.zip
09:18:1009:18:10release-zip:
09:18:10Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-594-db222df6ad-ice36-b130.zip
09:18:2009:18:20BUILD SUCCESSFUL
09:18:20Total time: 1 minute 46 seconds
09:18:20++ '[' -d .git ']'
09:18:20++ python3 ./build.py release-src
09:18:20Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
09:18:2009:18:20release-src-git:
09:18:20Releasing openmicroscopy-5.6.3-594-db222df6ad-ice36-b130
09:18:22 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-594-db222df6ad-ice36-b130.zip
09:18:22 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-594-db222df6ad-ice36-b130-base.zip
09:18:2309:18:23BUILD SUCCESSFUL
09:18:23Total time: 3 seconds
09:18:23++ echo BUILD_NUMBER=130
09:18:23++ echo OMERO_BRANCH=merge_ci
09:18:23++ git_info
09:18:23+++ git rev-parse HEAD
09:18:23++ HEAD=db222df6ad8a04380eacc7a46671993da4aba5a2
09:18:23++ git log --max-count=1 db222df6ad8a04380eacc7a46671993da4aba5a2
09:18:23++ env
09:18:23++ sort
09:18:23Archiving artifacts
09:18:39Finished: SUCCESS
