09:31:34Started by upstream project "Trigger" build number 18809:31:34originally caused by:
09:31:34 Started by user devspace09:31:34Running as SYSTEM
09:31:34Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
09:31:34The recommended git tool is: NONE
09:31:34No credentials specified
09:31:34 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10
09:31:34Fetching changes from the remote Git repository
09:31:34 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
09:31:34Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git09:31:34 > git --version # timeout=10
09:31:34 > git --version # 'git version 2.47.3'
09:31:34 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
09:31:36 > git rev-parse origin/merge_ci^{commit} # timeout=10
09:31:36Checking out Revision 4ae7ac9a4ad63ba62e2efa90678aeebbeb35a3e0 (origin/merge_ci)
09:31:36 > git config core.sparsecheckout # timeout=10
09:31:36 > git checkout -f 4ae7ac9a4ad63ba62e2efa90678aeebbeb35a3e0 # timeout=10
09:31:36Commit message: "Add version.properties to etc/omero.properties"
09:31:36 > git rev-list --no-walk 42c34a680997233964f9c101b4e5319d49b259c7 # timeout=10
09:31:36Cleaning workspace
09:31:36 > git rev-parse --verify HEAD # timeout=10
09:31:36Resetting working tree
09:31:36 > git reset --hard # timeout=10
09:31:37 > git clean -fdx # timeout=10
09:31:37Copied 6 artifacts from "OMERO-python-superbuild-build" build number 13209:31:37[OMERO-build] $ /bin/bash -xe /tmp/jenkins13766724487600085349.sh
09:31:37+ mv omero-scripts/dist/omero_scripts-5.10.1.dev0.tar.gz .
09:31:37+ cd src
09:31:37+ export OMERO_BRANCH=merge_ci
09:31:37+ OMERO_BRANCH=merge_ci
09:31:37+ OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
09:31:37+ rm -rf /home/omero/workspace/OMERO-build/omero-virtualenv
09:31:37+ source /home/omero/settings.env
09:31:37++ OMERO_DB_HOST=pg
09:31:37++ OMERO_DB_USER=postgres
09:31:37++ OMERO_DB_PASS=
09:31:37++ OMERO_ROOT_PASS=omero
09:31:37++ OMERO_DATA_DIR=/OMERO
09:31:37++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
09:31:37+ python3.11 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
09:31:41+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl09:31:41Collecting zeroc-ice==3.6.5
09:31:41 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
09:31:45 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 8.5 MB/s eta 0:00:00
09:31:45Installing collected packages: zeroc-ice
09:31:45Successfully installed zeroc-ice-3.6.5
09:31:4609:31:46[notice] A new release of pip available: 22.3.1 -> 26.1
09:31:46[notice] To update, run: python3.11 -m pip install --upgrade pip
09:31:46+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U 'setuptools<66' omero-py
09:31:46Requirement already satisfied: setuptools<66 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (65.5.1)
09:31:46Collecting setuptools<66
09:31:46 Using cached setuptools-65.7.0-py3-none-any.whl (1.2 MB)
09:31:46Collecting omero-py
09:31:47 Using cached omero_py-5.22.1-py3-none-any.whl (2.8 MB)
09:31:47Collecting appdirs
09:31:47 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
09:31:47Collecting future
09:31:47 Using cached future-1.0.0-py3-none-any.whl (491 kB)
09:31:47Collecting numpy<3,>=2
09:31:48 Using cached numpy-2.4.4-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB)
09:31:48Collecting Pillow>=10.0.0
09:31:48 Using cached pillow-12.2.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (7.1 MB)
09:31:49Collecting PyYAML
09:31:49 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB)
09:31:49Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (from omero-py) (3.6.5)
09:31:49Collecting requests
09:31:49 Using cached requests-2.33.1-py3-none-any.whl (64 kB)
09:31:49Collecting portalocker
09:31:49 Using cached portalocker-3.2.0-py3-none-any.whl (22 kB)
09:31:49Collecting charset_normalizer<4,>=2
09:31:49 Using cached charset_normalizer-3.4.7-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (214 kB)
09:31:49Collecting idna<4,>=2.5
09:31:49 Using cached idna-3.13-py3-none-any.whl (68 kB)
09:31:49Collecting urllib3<3,>=1.26
09:31:49 Using cached urllib3-2.6.3-py3-none-any.whl (131 kB)
09:31:50Collecting certifi>=2023.5.7
09:31:50 Using cached certifi-2026.4.22-py3-none-any.whl (135 kB)
09:31:50Installing collected packages: appdirs, urllib3, setuptools, PyYAML, portalocker, Pillow, numpy, idna, future, charset_normalizer, certifi, requests, omero-py
09:31:50 Attempting uninstall: setuptools
09:31:50 Found existing installation: setuptools 65.5.1
09:31:50 Uninstalling setuptools-65.5.1:
09:31:50 Successfully uninstalled setuptools-65.5.1
09:31:55Successfully installed Pillow-12.2.0 PyYAML-6.0.3 appdirs-1.4.4 certifi-2026.4.22 charset_normalizer-3.4.7 future-1.0.0 idna-3.13 numpy-2.4.4 omero-py-5.22.1 portalocker-3.2.0 requests-2.33.1 setuptools-65.7.0 urllib3-2.6.3
09:31:5509:31:55[notice] A new release of pip available: 22.3.1 -> 26.1
09:31:55[notice] To update, run: python3.11 -m pip install --upgrade pip
09:31:55+ source /home/omero/workspace/OMERO-build/omero-virtualenv/bin/activate
09:31:55++ deactivate nondestructive
09:31:55++ '[' -n '' ']'
09:31:55++ '[' -n '' ']'
09:31:55++ hash -r
09:31:55++ '[' -n '' ']'
09:31:55++ unset VIRTUAL_ENV
09:31:55++ unset VIRTUAL_ENV_PROMPT
09:31:55++ '[' '!' nondestructive = nondestructive ']'
09:31:55++ VIRTUAL_ENV=/home/omero/workspace/OMERO-build/omero-virtualenv
09:31:55++ export VIRTUAL_ENV
09:31:55++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
09:31:55++ PATH=/home/omero/workspace/OMERO-build/omero-virtualenv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
09:31:55++ export PATH
09:31:55++ '[' -n '' ']'
09:31:55++ '[' -z '' ']'
09:31:55++ _OLD_VIRTUAL_PS1=
09:31:55++ PS1='(omero-virtualenv) '
09:31:55++ export PS1
09:31:55++ VIRTUAL_ENV_PROMPT='(omero-virtualenv) '
09:31:55++ export VIRTUAL_ENV_PROMPT
09:31:55++ hash -r
09:31:55+ source docs/hudson/OMERO.sh
09:31:55++ set -e
09:31:55++ set -u
09:31:55++ set -x
09:31:55++ source docs/hudson/functions.sh
09:31:55++ echo Building merge_ci
09:31:55Building merge_ci
09:31:55++ python3 ./build.py build-dev release-all
09:31:55Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
09:31:5609:31:56check-ivy:
09:31:56Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
09:31:56Created dir: /home/omero/workspace/OMERO-build/src/target
09:31:56:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
09:31:56:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
09:31:5709:31:57build-scons:
09:31:57Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
09:31:57No sub-builds to iterate on
09:31:57Entering /home/omero/workspace/OMERO-build/src/components/tools...
09:31:5709:31:57buildlist:
09:31:57:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
09:31:57:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
09:31:5709:31:57clean:
09:31:57Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
09:31:57Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
09:31:5809:31:58python-clean:
09:31:58WARNING: '' not a valid package name; please use only .-separated package names in setup.py
09:31:58/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-594-4ae7ac9a4a-ice36-b141') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
09:31:58 warnings.warn(
09:31:58running clean
09:31:58Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
09:31:58Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
09:31:5809:31:58python-clean:
09:31:58WARNING: '' not a valid package name; please use only .-separated package names in setup.py
09:31:58/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-594-4ae7ac9a4a-ice36-b141') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
09:31:58 warnings.warn(
09:31:58running clean
09:31:58Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
09:31:58Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
09:31:58Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
09:31:58Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
09:31:5809:31:58python-clean:
09:31:58WARNING: '' not a valid package name; please use only .-separated package names in setup.py
09:31:58/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-594-4ae7ac9a4a-ice36-b141') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
09:31:58 warnings.warn(
09:31:58running clean
09:31:58Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
09:31:58Deleting directory /home/omero/workspace/OMERO-build/src/target
09:31:5809:31:58build-scons:
09:31:58Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
09:31:5809:31:58build:
09:31:58No sub-builds to iterate on
09:31:58Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
09:31:58Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
09:31:59Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
09:31:59Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
09:31:5909:31:59tools-init:
09:31:59no-op
09:31:5909:31:59retrieve:
09:31:59:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
09:31:59:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
09:31:59WARNING: An illegal reflective access operation has occurred
09:31:59WARNING: Illegal reflective access by org.apache.ivy.util.url.IvyAuthenticator (file:/home/omero/workspace/OMERO-build/src/lib/repository/ivy-2.4.0.jar) to field java.net.Authenticator.theAuthenticator
09:31:59WARNING: Please consider reporting this to the maintainers of org.apache.ivy.util.url.IvyAuthenticator
09:31:59WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
09:31:59WARNING: All illegal access operations will be denied in a future release
09:32:4309:32:43prepare:
09:32:43Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
09:32:43Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
09:32:43Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
09:32:43Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
09:32:43Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
09:32:43Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
09:32:43Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
09:32:43Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
09:32:43Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
09:32:43Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
09:32:43Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
09:32:43Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
09:32:43Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
09:32:43Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
09:32:43Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
09:32:4409:32:44pre-compile:
09:32:44Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
09:32:44Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
09:32:44Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
09:32:44Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
09:32:44Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
09:32:4409:32:44compile:
09:32:44no-op
09:32:4409:32:44package:
09:32:44Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
09:32:4409:32:44install:
09:32:44:: delivering :: omero#omero_client;working@26c1bc7ef6b1 :: 5.6.3-594-4ae7ac9a4a-ice36-b141 :: integration :: Fri May 01 09:31:59 UTC 2026
09:32:44 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
09:32:44:: publishing :: omero#omero_client
09:32:44 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-594-4ae7ac9a4a-ice36-b141/omero_client-5.6.3-594-4ae7ac9a4a-ice36-b141.jar
09:32:44 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-594-4ae7ac9a4a-ice36-b141/omero_client-5.6.3-594-4ae7ac9a4a-ice36-b141.xml
09:32:44Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
09:32:44Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
09:32:4509:32:45retrieve:
09:32:45:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
09:32:45:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
09:32:45Entering /home/omero/workspace/OMERO-build/src/components/tools...
09:32:4509:32:45dist:
09:32:45Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
09:32:45Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
09:32:45Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
09:32:45Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.10.1.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
09:32:45Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
09:32:45Copying 29 files to /home/omero/workspace/OMERO-build/src/dist
09:32:45Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
09:32:45Entering /home/omero/workspace/OMERO-build/src/components/tests...
09:32:45Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
09:32:4509:32:45copy-licenses:
09:32:45Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
09:32:45Created dir: /home/omero/workspace/OMERO-build/src/dist/share
09:32:45Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
09:32:4509:32:45copy-history:
09:32:45Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
09:32:4509:32:45copy-etc:
09:32:45Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
09:32:45Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
09:32:4509:32:45copy-sql:
09:32:45Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
09:32:5209:32:52copy-server:
09:32:52 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.1.9 won
09:32:5209:32:52copy-client:
09:32:52Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
09:32:53 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.1.9 won
09:32:5309:32:53update-version:
09:32:53Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
09:32:5309:32:53create-workdirs:
09:32:53Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
09:32:53Created dir: /home/omero/workspace/OMERO-build/src/dist/var
09:32:53Created dir: /home/omero/workspace/OMERO-build/src/dist/var/tmp
09:32:5309:32:53copy-luts:
09:32:53Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
09:32:53Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
09:32:5309:32:53test-compile:
09:32:53:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
09:32:53Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
09:32:53Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
09:32:53Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
09:32:53Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
09:32:54Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
09:32:54Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
09:32:54Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
09:32:5409:32:54testng-init:
09:32:54:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
09:32:54:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
09:32:5809:32:57,749 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.16
09:32:5809:32:57,752 |-INFO in ch.qos.logback.classic.util.ContextInitializer@243fe859 - No custom configurators were discovered as a service.
09:32:5809:32:57,752 |-INFO in ch.qos.logback.classic.util.ContextInitializer@243fe859 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
09:32:5809:32:57,755 |-INFO in ch.qos.logback.classic.util.ContextInitializer@243fe859 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
09:32:5809:32:57,756 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
09:32:5809:32:57,756 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
09:32:5809:32:57,757 |-INFO in ch.qos.logback.classic.util.ContextInitializer@243fe859 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
09:32:5809:32:57,757 |-INFO in ch.qos.logback.classic.util.ContextInitializer@243fe859 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
09:32:5809:32:57,759 |-INFO in ch.qos.logback.classic.util.ContextInitializer@243fe859 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
09:32:5809:32:57,759 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
09:32:5809:32:57,759 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
09:32:5809:32:57,760 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@384edc3b - Resource [logback.xml] occurs multiple times on the classpath.
09:32:5809:32:57,760 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@384edc3b - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
09:32:5809:32:57,760 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@384edc3b - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
09:32:5809:32:57,951 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
09:32:5809:32:57,951 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
09:32:5809:32:57,970 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
09:32:5809:32:57,971 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@13421eb0 - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
09:32:5809:32:57,971 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@13421eb0 - Please move "immediateFlush" property into the enclosing appender.
09:32:5809:32:58,029 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@13421eb0 - Setting the "immediateFlush" property of the enclosing appender to true
09:32:5809:32:58,030 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
09:32:5809:32:58,030 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
09:32:5809:32:58,030 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
09:32:5809:32:58,030 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
09:32:5809:32:58,030 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
09:32:5809:32:58,030 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
09:32:5809:32:58,032 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@bf68379 - End of configuration.
09:32:5809:32:58,034 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5050cf7e - Registering current configuration as safe fallback point
09:32:5809:32:58,034 |-INFO in ch.qos.logback.classic.util.ContextInitializer@243fe859 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 275 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
09:32:5809:32:58lifecycle.test-compile:
09:32:58Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
09:32:58Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
09:32:58warning: [options] bootstrap class path not set in conjunction with -source 8
09:32:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
09:32:59import omero.grid.RawAccessRequest;
09:32:59 ^
09:32:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
09:32:59import omero.grid.RawAccessRequest;
09:32:59 ^
09:32:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
09:32:59import omero.grid.RawAccessRequest;
09:32:59 ^
09:32:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
09:32:59import omero.model.ImportJob;
09:32:59 ^
09:32:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
09:32:59import omero.model.ImportJobI;
09:32:59 ^
09:33:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated
09:33:00 IObject link = (IObject) linkClass.newInstance();
09:33:00 ^
09:33:00 where T is a type-variable:
09:33:00 T extends Object declared in class Class
09:33:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
09:33:00 T copy = (T) obj.getClass().newInstance();
09:33:00 ^
09:33:00 where T is a type-variable:
09:33:00 T extends Object declared in class Class
09:33:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
09:33:00 RawAccessRequest raw = new RawAccessRequest();
09:33:00 ^
09:33:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
09:33:00 RawAccessRequest raw = new RawAccessRequest();
09:33:00 ^
09:33:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
09:33:00 raw.repoUuid = legacy.root().getHash().getValue();
09:33:00 ^
09:33:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
09:33:00 raw.command = "rm";
09:33:00 ^
09:33:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
09:33:00 raw.args = Arrays.asList(path);
09:33:00 ^
09:33:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
09:33:00 final IObject link = linkClass.newInstance();
09:33:00 ^
09:33:00 where T is a type-variable:
09:33:00 T extends Object declared in class Class
09:33:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
09:33:01 originalLink.setChild(annotationClass.newInstance());
09:33:01 ^
09:33:01 where T is a type-variable:
09:33:01 T extends Object declared in class Class
09:33:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
09:33:01 RoiResult r = svc.findByImage(id, new RoiOptions());
09:33:01 ^
09:33:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
09:33:01 final RawAccessRequest request = new RawAccessRequest();
09:33:01 ^
09:33:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
09:33:01 final RawAccessRequest request = new RawAccessRequest();
09:33:01 ^
09:33:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
09:33:01 request.repoUuid = repo.root().getHash().getValue();
09:33:01 ^
09:33:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
09:33:01 request.command = "exists";
09:33:01 ^
09:33:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
09:33:01 request.args = Collections.singletonList(dirPath);
09:33:01 ^
09:33:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
09:33:01 final RawAccessRequest request = new RawAccessRequest();
09:33:01 ^
09:33:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
09:33:01 final RawAccessRequest request = new RawAccessRequest();
09:33:01 ^
09:33:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
09:33:01 request.repoUuid = repo.root().getHash().getValue();
09:33:01 ^
09:33:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
09:33:01 request.command = "exists";
09:33:01 ^
09:33:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
09:33:01 request.args = Collections.singletonList(dirName);
09:33:01 ^
09:33:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
09:33:01 final ImportJob importJob = new ImportJobI();
09:33:01 ^
09:33:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
09:33:01 final ImportJob importJob = new ImportJobI();
09:33:01 ^
09:33:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
09:33:01 importJob.setImageName(omero.rtypes.rstring(name));
09:33:01 ^
09:33:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
09:33:01 importJob.setImageDescription(omero.rtypes.rstring(desc));
09:33:01 ^
09:33:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
09:33:01 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
09:33:01 ^
09:33:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
09:33:01 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
09:33:01 ^
09:33:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
09:33:01 final String savedName = sent.getImageName().getValue().toString();
09:33:01 ^
09:33:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
09:33:01 final String savedDesc = sent.getImageDescription().getValue().toString();
09:33:01 ^
09:33:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
09:33:01 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
09:33:01 ^
09:33:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
09:33:01 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
09:33:01 ^
09:33:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
09:33:01 final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
09:33:01 ^
09:33:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
09:33:01 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
09:33:01 ^
09:33:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
09:33:02 RoiResult r = svc.findByImage(image.getId().getValue(),
09:33:02 ^
09:33:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
09:33:02 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
09:33:02 ^
09:33:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
09:33:02 l = svc.getRoiMeasurements(image.getId().getValue(), options);
09:33:02 ^
09:33:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
09:33:02 l = svc.getRoiMeasurements(image.getId().getValue(), options);
09:33:02 ^
09:33:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
09:33:02 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
09:33:02 ^
09:33:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
09:33:02 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
09:33:02 ^
09:33:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
09:33:02 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
09:33:02 ^
09:33:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
09:33:02 table = svc.getTable(f.getId().getValue());
09:33:02 ^
09:33:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
09:33:02 RoiResult r = svc.findByImage(image.getId().getValue(),
09:33:02 ^
09:33:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
09:33:02 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
09:33:02 ^
09:33:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
09:33:02 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
09:33:02 ^
09:33:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
09:33:02 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
09:33:02 ^
09:33:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
09:33:02 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
09:33:02 ^
09:33:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
09:33:02 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
09:33:02 ^
09:33:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
09:33:02 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
09:33:02 ^
09:33:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
09:33:02 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
09:33:02 ^
09:33:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
09:33:02 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
09:33:02 ^
09:33:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Long(long) in Long has been deprecated
09:33:02 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
09:33:02 ^
09:33:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
09:33:02 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
09:33:02 ^
09:33:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
09:33:02 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
09:33:02 ^
09:33:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
09:33:02 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
09:33:02 ^
09:33:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
09:33:02 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
09:33:02 ^
09:33:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
09:33:02 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
09:33:02 ^
09:33:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
09:33:02 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
09:33:02 ^
09:33:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
09:33:02 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
09:33:02 ^
09:33:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
09:33:02 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
09:33:02 ^
09:33:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
09:33:02 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
09:33:02 ^
09:33:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
09:33:02 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
09:33:02 ^
09:33:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
09:33:02 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
09:33:02 ^
09:33:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
09:33:02 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
09:33:02 ^
09:33:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
09:33:02 svc.getShapeStatsRestricted(
09:33:02 ^
09:33:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
09:33:02 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
09:33:02 ^
09:33:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
09:33:02 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
09:33:02 ^
09:33:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
09:33:02 request.typesToIgnore = Collections.singletonList("TagAnnotation");
09:33:02 ^
09:33:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
09:33:02 request.typesToIgnore = Collections.singletonList("IAnnotationLink");
09:33:02 ^
09:33:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
09:33:02 request.typesToIgnore = Collections.singletonList("Annotation");
09:33:02 ^
09:33:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
09:33:02 request.typesToIgnore = Collections.singletonList("Annotation");
09:33:02 ^
09:33:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
09:33:02 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
09:33:02 ^
09:33:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
09:33:02 p2.setRelatedTo(p1);
09:33:02 ^
09:33:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
09:33:02 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
09:33:02 ^
09:33:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
09:33:02 pixels1.setRelatedTo(pixels2);
09:33:02 ^
09:33:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
09:33:02 Pixels pixels = pixels1.getRelatedTo();
09:33:02 ^
09:33:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
09:33:02 Assert.assertNull(pixels1.getRelatedTo());
09:33:02 ^
09:33:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
09:33:02 pixels1.setRelatedTo(pixels2);
09:33:02 ^
09:33:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
09:33:02 Pixels pixels = pixels1.getRelatedTo();
09:33:02 ^
09:33:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
09:33:02 Assert.assertNull(pixels1.getRelatedTo());
09:33:02 ^
09:33:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
09:33:02 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
09:33:02 ^
09:33:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
09:33:02 l = svc.getRoiMeasurements(image.getId().getValue(), options);
09:33:02 ^
09:33:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
09:33:02 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
09:33:02 ^
09:33:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
09:33:02 l = svc.getRoiMeasurements(image.getId().getValue(), options);
09:33:02 ^
09:33:02Note: Some input files use unchecked or unsafe operations.
09:33:02Note: Recompile with -Xlint:unchecked for details.
09:33:0288 warnings
09:33:02Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_1283628706.tmp
09:33:02Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar
09:33:02:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
09:33:02:: delivering :: omero#OmeroJava-test;working@26c1bc7ef6b1 :: 5.6.3-594-4ae7ac9a4a-ice36-b141 :: integration :: Fri May 01 09:32:54 UTC 2026
09:33:02 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml
09:33:02:: publishing :: omero#OmeroJava-test
09:33:02 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-594-4ae7ac9a4a-ice36-b141.jar
09:33:02 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-594-4ae7ac9a4a-ice36-b141.xml
09:33:0209:33:02build-eclipse:
09:33:02No sub-builds to iterate on
09:33:03Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
09:33:0309:33:03retrieve:
09:33:03:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
09:33:03:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
09:33:0509:33:05prepare:
09:33:05Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
09:33:0609:33:06release-clients:
09:33:06Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-594-4ae7ac9a4a-ice36-b141.zip
09:33:1109:33:11release-zip:
09:33:11Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-594-4ae7ac9a4a-ice36-b141.zip
09:33:2109:33:21BUILD SUCCESSFUL
09:33:21Total time: 1 minute 25 seconds
09:33:21++ '[' -d .git ']'
09:33:21++ python3 ./build.py release-src
09:33:21Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
09:33:2109:33:21release-src-git:
09:33:21Releasing openmicroscopy-5.6.3-594-4ae7ac9a4a-ice36-b141
09:33:23 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-594-4ae7ac9a4a-ice36-b141.zip
09:33:23 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-594-4ae7ac9a4a-ice36-b141-base.zip
09:33:2409:33:24BUILD SUCCESSFUL
09:33:24Total time: 3 seconds
09:33:24++ echo BUILD_NUMBER=141
09:33:24++ echo OMERO_BRANCH=merge_ci
09:33:24++ git_info
09:33:24+++ git rev-parse HEAD
09:33:24++ HEAD=4ae7ac9a4ad63ba62e2efa90678aeebbeb35a3e0
09:33:24++ git log --max-count=1 4ae7ac9a4ad63ba62e2efa90678aeebbeb35a3e0
09:33:24++ env
09:33:24++ sort
09:33:24Archiving artifacts
09:33:41Finished: SUCCESS
