16:06:28Started by user devspace16:06:28Running as SYSTEM
16:06:28Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
16:06:28The recommended git tool is: NONE
16:06:28No credentials specified
16:06:28 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10
16:06:28Fetching changes from the remote Git repository
16:06:28 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
16:06:28Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git16:06:28 > git --version # timeout=10
16:06:28 > git --version # 'git version 2.52.0'
16:06:28 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
16:06:31 > git rev-parse origin/merge_ci^{commit} # timeout=10
16:06:31Checking out Revision 8fd4dc4071d73934bd60906f08ff753e47526873 (origin/merge_ci)
16:06:31 > git config core.sparsecheckout # timeout=10
16:06:31 > git checkout -f 8fd4dc4071d73934bd60906f08ff753e47526873 # timeout=10
16:06:35Commit message: "Add version.properties to etc/omero.properties"
16:06:35 > git rev-list --no-walk 6792b8987e451ee9582e86655ac7fb42ba994753 # timeout=10
16:06:35Cleaning workspace
16:06:35 > git rev-parse --verify HEAD # timeout=10
16:06:35Resetting working tree
16:06:35 > git reset --hard # timeout=10
16:06:36 > git clean -fdx # timeout=10
16:07:06Copied 6 artifacts from "OMERO-python-superbuild-build" build number 1416:07:06[OMERO-build] $ /bin/bash -xe /tmp/jenkins8170304989271001791.sh
16:07:06+ mv omero-scripts/dist/omero_scripts-5.10.1.dev0.tar.gz .
16:07:06+ cd src
16:07:06+ export OMERO_BRANCH=merge_ci
16:07:06+ OMERO_BRANCH=merge_ci
16:07:06+ OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
16:07:06+ rm -rf /home/omero/workspace/OMERO-build/omero-virtualenv
16:07:36+ source /home/omero/settings.env
16:07:36++ OMERO_DB_HOST=pg
16:07:36++ OMERO_DB_USER=postgres
16:07:36++ OMERO_DB_PASS=
16:07:36++ OMERO_ROOT_PASS=omero
16:07:36++ OMERO_DATA_DIR=/OMERO
16:07:36++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
16:07:36+ python3.11 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
16:07:56+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl16:07:57Collecting zeroc-ice==3.6.5
16:07:58 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
16:08:00 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 11.6 MB/s eta 0:00:00
16:08:01Installing collected packages: zeroc-ice
16:08:04Successfully installed zeroc-ice-3.6.5
16:08:0416:08:04[notice] A new release of pip available: 22.3.1 -> 26.1.2
16:08:04[notice] To update, run: python3.11 -m pip install --upgrade pip
16:08:04+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U 'setuptools<66' omero-py
16:08:05Requirement already satisfied: setuptools<66 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (65.5.1)
16:08:05Collecting setuptools<66
16:08:05 Using cached setuptools-65.7.0-py3-none-any.whl (1.2 MB)
16:08:06Collecting omero-py
16:08:06 Using cached omero_py-5.22.1-py3-none-any.whl (2.8 MB)
16:08:06Collecting appdirs
16:08:06 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
16:08:06Collecting future
16:08:06 Using cached future-1.0.0-py3-none-any.whl (491 kB)
16:08:07Collecting numpy<3,>=2
16:08:07 Using cached numpy-2.4.6-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB)
16:08:07Collecting Pillow>=10.0.0
16:08:07 Using cached pillow-12.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (6.9 MB)
16:08:08Collecting PyYAML
16:08:08 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB)
16:08:08Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (from omero-py) (3.6.5)
16:08:08Collecting requests
16:08:08 Using cached requests-2.34.2-py3-none-any.whl (73 kB)
16:08:08Collecting portalocker
16:08:08 Using cached portalocker-3.2.0-py3-none-any.whl (22 kB)
16:08:09Collecting charset_normalizer<4,>=2
16:08:09 Using cached charset_normalizer-3.4.9-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (221 kB)
16:08:09Collecting idna<4,>=2.5
16:08:09 Using cached idna-3.18-py3-none-any.whl (65 kB)
16:08:09Collecting urllib3<3,>=1.26
16:08:09 Using cached urllib3-2.7.0-py3-none-any.whl (131 kB)
16:08:09Collecting certifi>=2023.5.7
16:08:09 Using cached certifi-2026.6.17-py3-none-any.whl (133 kB)
16:08:09Installing collected packages: appdirs, urllib3, setuptools, PyYAML, portalocker, Pillow, numpy, idna, future, charset_normalizer, certifi, requests, omero-py
16:08:10 Attempting uninstall: setuptools
16:08:10 Found existing installation: setuptools 65.5.1
16:08:11 Uninstalling setuptools-65.5.1:
16:08:11 Successfully uninstalled setuptools-65.5.1
16:08:58Successfully installed Pillow-12.3.0 PyYAML-6.0.3 appdirs-1.4.4 certifi-2026.6.17 charset_normalizer-3.4.9 future-1.0.0 idna-3.18 numpy-2.4.6 omero-py-5.22.1 portalocker-3.2.0 requests-2.34.2 setuptools-65.7.0 urllib3-2.7.0
16:08:5816:08:58[notice] A new release of pip available: 22.3.1 -> 26.1.2
16:08:58[notice] To update, run: python3.11 -m pip install --upgrade pip
16:08:58+ source /home/omero/workspace/OMERO-build/omero-virtualenv/bin/activate
16:08:58++ deactivate nondestructive
16:08:58++ '[' -n '' ']'
16:08:58++ '[' -n '' ']'
16:08:58++ hash -r
16:08:58++ '[' -n '' ']'
16:08:58++ unset VIRTUAL_ENV
16:08:58++ unset VIRTUAL_ENV_PROMPT
16:08:58++ '[' '!' nondestructive = nondestructive ']'
16:08:58++ VIRTUAL_ENV=/home/omero/workspace/OMERO-build/omero-virtualenv
16:08:58++ export VIRTUAL_ENV
16:08:58++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
16:08:58++ PATH=/home/omero/workspace/OMERO-build/omero-virtualenv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
16:08:58++ export PATH
16:08:58++ '[' -n '' ']'
16:08:58++ '[' -z '' ']'
16:08:58++ _OLD_VIRTUAL_PS1=
16:08:58++ PS1='(omero-virtualenv) '
16:08:58++ export PS1
16:08:58++ VIRTUAL_ENV_PROMPT='(omero-virtualenv) '
16:08:58++ export VIRTUAL_ENV_PROMPT
16:08:58++ hash -r
16:08:58+ source docs/hudson/OMERO.sh
16:08:58++ set -e
16:08:58++ set -u
16:08:58++ set -x
16:08:58++ source docs/hudson/functions.sh
16:08:58++ echo Building merge_ci
16:08:58Building merge_ci
16:08:58++ python3 ./build.py build-dev release-all
16:08:58Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
16:08:5916:08:59check-ivy:
16:08:59Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
16:08:59Created dir: /home/omero/workspace/OMERO-build/src/target
16:09:00:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
16:09:00:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
16:09:0116:09:01build-scons:
16:09:01Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
16:09:02No sub-builds to iterate on
16:09:03Entering /home/omero/workspace/OMERO-build/src/components/tools...
16:09:0316:09:03buildlist:
16:09:03:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
16:09:03:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
16:09:0316:09:03clean:
16:09:03Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
16:09:04Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
16:09:0416:09:04python-clean:
16:09:04WARNING: '' not a valid package name; please use only .-separated package names in setup.py
16:09:04/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-630-8fd4dc4071-ice36-b16') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
16:09:04 warnings.warn(
16:09:04running clean
16:09:04Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
16:09:05Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
16:09:0516:09:05python-clean:
16:09:05WARNING: '' not a valid package name; please use only .-separated package names in setup.py
16:09:05/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-630-8fd4dc4071-ice36-b16') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
16:09:05 warnings.warn(
16:09:05running clean
16:09:05Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
16:09:06Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
16:09:06Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
16:09:06Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
16:09:0616:09:06python-clean:
16:09:06WARNING: '' not a valid package name; please use only .-separated package names in setup.py
16:09:06/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-630-8fd4dc4071-ice36-b16') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
16:09:06 warnings.warn(
16:09:06running clean
16:09:06Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
16:09:06Deleting directory /home/omero/workspace/OMERO-build/src/target
16:09:0716:09:07build-scons:
16:09:07Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
16:09:0916:09:09build:
16:09:09No sub-builds to iterate on
16:09:09Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
16:09:09Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
16:09:09Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
16:09:10Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
16:09:1016:09:10tools-init:
16:09:10no-op
16:09:1016:09:10retrieve:
16:09:10:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
16:09:10:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
16:10:2216:10:22prepare:
16:10:22Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
16:10:22Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
16:10:22Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
16:10:22Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
16:10:22Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
16:10:22Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
16:10:22Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
16:10:22Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
16:10:22Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
16:10:22Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
16:10:22Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
16:10:22Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
16:10:22Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
16:10:22Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
16:10:22Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
16:10:2216:10:22pre-compile:
16:10:22Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
16:10:24Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
16:10:30Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
16:10:35Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
16:10:35Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
16:10:3716:10:37compile:
16:10:37no-op
16:10:3816:10:38package:
16:10:38Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
16:10:4116:10:41install:
16:10:41:: delivering :: omero#omero_client;working@477d91c674a5 :: 5.6.3-630-8fd4dc4071-ice36-b16 :: integration :: Tue Jul 21 16:09:09 UTC 2026
16:10:41 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
16:10:41:: publishing :: omero#omero_client
16:10:41 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-630-8fd4dc4071-ice36-b16/omero_client-5.6.3-630-8fd4dc4071-ice36-b16.jar
16:10:41 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-630-8fd4dc4071-ice36-b16/omero_client-5.6.3-630-8fd4dc4071-ice36-b16.xml
16:10:42Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
16:10:42Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
16:10:4216:10:42retrieve:
16:10:42:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
16:10:42:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
16:10:43Entering /home/omero/workspace/OMERO-build/src/components/tools...
16:10:4316:10:43dist:
16:10:43Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
16:10:43Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
16:10:43Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
16:10:43Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.10.1.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
16:10:44Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
16:10:44Copying 29 files to /home/omero/workspace/OMERO-build/src/dist
16:10:44Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
16:10:45Entering /home/omero/workspace/OMERO-build/src/components/tests...
16:10:45Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
16:10:4616:10:46copy-licenses:
16:10:46Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
16:10:46Created dir: /home/omero/workspace/OMERO-build/src/dist/share
16:10:46Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
16:10:4616:10:46copy-history:
16:10:46Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
16:10:4616:10:46copy-etc:
16:10:46Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
16:10:47Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
16:10:4716:10:47copy-sql:
16:10:47Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
16:10:5916:10:59copy-server:
16:10:59 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.1.9 won
16:11:0416:11:04copy-client:
16:11:04Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
16:11:08 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.1.9 won
16:11:1216:11:12update-version:
16:11:12Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
16:11:1216:11:12create-workdirs:
16:11:12Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
16:11:12Created dir: /home/omero/workspace/OMERO-build/src/dist/var
16:11:12Created dir: /home/omero/workspace/OMERO-build/src/dist/var/tmp
16:11:1216:11:12copy-luts:
16:11:12Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
16:11:12Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
16:11:1216:11:12test-compile:
16:11:12:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
16:11:13Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
16:11:13Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
16:11:13Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
16:11:13Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
16:11:14Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
16:11:14Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
16:11:14Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
16:11:1516:11:15testng-init:
16:11:15:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
16:11:15:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
16:11:2316:11:23,146 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.16
16:11:2316:11:23,149 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1492c9d - No custom configurators were discovered as a service.
16:11:2316:11:23,149 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1492c9d - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
16:11:2316:11:23,153 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1492c9d - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
16:11:2316:11:23,156 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
16:11:2316:11:23,158 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
16:11:2316:11:23,159 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1492c9d - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 6 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
16:11:2316:11:23,159 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1492c9d - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
16:11:2316:11:23,161 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1492c9d - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
16:11:2316:11:23,163 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
16:11:2316:11:23,165 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
16:11:2316:11:23,166 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@24df8abf - Resource [logback.xml] occurs multiple times on the classpath.
16:11:2316:11:23,166 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@24df8abf - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
16:11:2316:11:23,166 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@24df8abf - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
16:11:2316:11:23,399 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
16:11:2316:11:23,399 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
16:11:2316:11:23,422 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
16:11:2316:11:23,424 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@390d47db - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
16:11:2316:11:23,424 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@390d47db - Please move "immediateFlush" property into the enclosing appender.
16:11:2316:11:23,498 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@390d47db - Setting the "immediateFlush" property of the enclosing appender to true
16:11:2316:11:23,499 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
16:11:2316:11:23,500 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
16:11:2316:11:23,500 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
16:11:2316:11:23,500 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
16:11:2316:11:23,500 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
16:11:2316:11:23,500 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
16:11:2316:11:23,501 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@6aa09c35 - End of configuration.
16:11:2316:11:23,504 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@22457838 - Registering current configuration as safe fallback point
16:11:2316:11:23,504 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1492c9d - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 343 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
16:11:2316:11:23lifecycle.test-compile:
16:11:23Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
16:11:23Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
16:11:23warning: [options] bootstrap class path not set in conjunction with -source 8
16:11:23warning: [options] source value 8 is obsolete and will be removed in a future release
16:11:23warning: [options] target value 8 is obsolete and will be removed in a future release
16:11:23warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
16:11:25/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
16:11:25import omero.grid.RawAccessRequest;
16:11:25 ^
16:11:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
16:11:26import omero.grid.RawAccessRequest;
16:11:26 ^
16:11:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
16:11:26import omero.grid.RawAccessRequest;
16:11:26 ^
16:11:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
16:11:26import omero.model.ImportJob;
16:11:26 ^
16:11:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
16:11:26import omero.model.ImportJobI;
16:11:26 ^
16:11:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated
16:11:27 IObject link = (IObject) linkClass.newInstance();
16:11:27 ^
16:11:27 where T is a type-variable:
16:11:27 T extends Object declared in class Class
16:11:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
16:11:27 T copy = (T) obj.getClass().newInstance();
16:11:27 ^
16:11:27 where T is a type-variable:
16:11:27 T extends Object declared in class Class
16:11:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
16:11:27 RawAccessRequest raw = new RawAccessRequest();
16:11:27 ^
16:11:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
16:11:27 RawAccessRequest raw = new RawAccessRequest();
16:11:27 ^
16:11:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
16:11:27 raw.repoUuid = legacy.root().getHash().getValue();
16:11:27 ^
16:11:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
16:11:27 raw.command = "rm";
16:11:27 ^
16:11:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
16:11:27 raw.args = Arrays.asList(path);
16:11:27 ^
16:11:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
16:11:27 final IObject link = linkClass.newInstance();
16:11:27 ^
16:11:27 where T is a type-variable:
16:11:27 T extends Object declared in class Class
16:11:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
16:11:27 originalLink.setChild(annotationClass.newInstance());
16:11:27 ^
16:11:27 where T is a type-variable:
16:11:27 T extends Object declared in class Class
16:11:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
16:11:28 RoiResult r = svc.findByImage(id, new RoiOptions());
16:11:28 ^
16:11:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
16:11:28 final RawAccessRequest request = new RawAccessRequest();
16:11:28 ^
16:11:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
16:11:28 final RawAccessRequest request = new RawAccessRequest();
16:11:28 ^
16:11:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
16:11:28 request.repoUuid = repo.root().getHash().getValue();
16:11:28 ^
16:11:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
16:11:28 request.command = "exists";
16:11:28 ^
16:11:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
16:11:28 request.args = Collections.singletonList(dirPath);
16:11:28 ^
16:11:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
16:11:28 final RawAccessRequest request = new RawAccessRequest();
16:11:28 ^
16:11:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
16:11:28 final RawAccessRequest request = new RawAccessRequest();
16:11:28 ^
16:11:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
16:11:28 request.repoUuid = repo.root().getHash().getValue();
16:11:28 ^
16:11:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
16:11:28 request.command = "exists";
16:11:28 ^
16:11:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
16:11:28 request.args = Collections.singletonList(dirName);
16:11:28 ^
16:11:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
16:11:28 final ImportJob importJob = new ImportJobI();
16:11:28 ^
16:11:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
16:11:28 final ImportJob importJob = new ImportJobI();
16:11:28 ^
16:11:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
16:11:28 importJob.setImageName(omero.rtypes.rstring(name));
16:11:28 ^
16:11:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
16:11:28 importJob.setImageDescription(omero.rtypes.rstring(desc));
16:11:28 ^
16:11:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
16:11:28 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
16:11:28 ^
16:11:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
16:11:28 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
16:11:28 ^
16:11:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
16:11:28 final String savedName = sent.getImageName().getValue().toString();
16:11:28 ^
16:11:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
16:11:28 final String savedDesc = sent.getImageDescription().getValue().toString();
16:11:28 ^
16:11:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
16:11:28 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
16:11:28 ^
16:11:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
16:11:28 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
16:11:28 ^
16:11:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
16:11:28 final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
16:11:28 ^
16:11:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
16:11:28 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
16:11:28 ^
16:11:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
16:11:29 RoiResult r = svc.findByImage(image.getId().getValue(),
16:11:29 ^
16:11:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
16:11:29 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
16:11:29 ^
16:11:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
16:11:29 l = svc.getRoiMeasurements(image.getId().getValue(), options);
16:11:29 ^
16:11:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
16:11:29 l = svc.getRoiMeasurements(image.getId().getValue(), options);
16:11:29 ^
16:11:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
16:11:29 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
16:11:29 ^
16:11:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
16:11:29 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
16:11:29 ^
16:11:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
16:11:29 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
16:11:29 ^
16:11:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
16:11:29 table = svc.getTable(f.getId().getValue());
16:11:29 ^
16:11:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
16:11:29 RoiResult r = svc.findByImage(image.getId().getValue(),
16:11:29 ^
16:11:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
16:11:29 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
16:11:29 ^
16:11:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
16:11:29 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
16:11:29 ^
16:11:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
16:11:29 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
16:11:29 ^
16:11:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
16:11:29 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
16:11:29 ^
16:11:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
16:11:29 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
16:11:29 ^
16:11:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
16:11:29 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
16:11:29 ^
16:11:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
16:11:29 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
16:11:29 ^
16:11:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
16:11:29 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
16:11:29 ^
16:11:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Long(long) in Long has been deprecated and marked for removal
16:11:29 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
16:11:29 ^
16:11:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
16:11:29 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
16:11:29 ^
16:11:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
16:11:29 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
16:11:29 ^
16:11:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
16:11:29 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
16:11:29 ^
16:11:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
16:11:29 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
16:11:29 ^
16:11:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
16:11:29 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
16:11:29 ^
16:11:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
16:11:29 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
16:11:29 ^
16:11:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
16:11:29 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
16:11:29 ^
16:11:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
16:11:29 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
16:11:29 ^
16:11:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
16:11:29 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
16:11:29 ^
16:11:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
16:11:29 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
16:11:29 ^
16:11:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
16:11:29 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
16:11:29 ^
16:11:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
16:11:29 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
16:11:29 ^
16:11:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
16:11:29 svc.getShapeStatsRestricted(
16:11:29 ^
16:11:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
16:11:29 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
16:11:29 ^
16:11:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
16:11:29 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
16:11:29 ^
16:11:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
16:11:29 request.typesToIgnore = Collections.singletonList("TagAnnotation");
16:11:29 ^
16:11:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
16:11:29 request.typesToIgnore = Collections.singletonList("IAnnotationLink");
16:11:29 ^
16:11:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
16:11:29 request.typesToIgnore = Collections.singletonList("Annotation");
16:11:29 ^
16:11:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
16:11:29 request.typesToIgnore = Collections.singletonList("Annotation");
16:11:29 ^
16:11:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
16:11:29 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
16:11:29 ^
16:11:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
16:11:29 p2.setRelatedTo(p1);
16:11:29 ^
16:11:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
16:11:29 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
16:11:29 ^
16:11:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
16:11:29 pixels1.setRelatedTo(pixels2);
16:11:29 ^
16:11:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
16:11:29 Pixels pixels = pixels1.getRelatedTo();
16:11:29 ^
16:11:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
16:11:29 Assert.assertNull(pixels1.getRelatedTo());
16:11:29 ^
16:11:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
16:11:29 pixels1.setRelatedTo(pixels2);
16:11:29 ^
16:11:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
16:11:29 Pixels pixels = pixels1.getRelatedTo();
16:11:29 ^
16:11:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
16:11:29 Assert.assertNull(pixels1.getRelatedTo());
16:11:29 ^
16:11:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
16:11:29 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
16:11:29 ^
16:11:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
16:11:29 l = svc.getRoiMeasurements(image.getId().getValue(), options);
16:11:29 ^
16:11:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
16:11:29 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
16:11:29 ^
16:11:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
16:11:29 l = svc.getRoiMeasurements(image.getId().getValue(), options);
16:11:29 ^
16:11:30Note: Some input files use unchecked or unsafe operations.
16:11:30Note: Recompile with -Xlint:unchecked for details.
16:11:3091 warnings
16:11:30Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_1939689624.tmp
16:11:30Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar
16:11:30:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
16:11:30:: delivering :: omero#OmeroJava-test;working@477d91c674a5 :: 5.6.3-630-8fd4dc4071-ice36-b16 :: integration :: Tue Jul 21 16:11:14 UTC 2026
16:11:30 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml
16:11:30:: publishing :: omero#OmeroJava-test
16:11:30 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-630-8fd4dc4071-ice36-b16.jar
16:11:30 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-630-8fd4dc4071-ice36-b16.xml
16:11:3016:11:30build-eclipse:
16:11:30No sub-builds to iterate on
16:11:31Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
16:11:3116:11:31retrieve:
16:11:31:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
16:11:31:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
16:11:3516:11:35prepare:
16:11:35Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
16:11:3816:11:38release-clients:
16:11:38Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-630-8fd4dc4071-ice36-b16.zip
16:11:4416:11:44release-zip:
16:11:44Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-630-8fd4dc4071-ice36-b16.zip
16:11:5516:11:55BUILD SUCCESSFUL
16:11:55Total time: 2 minutes 56 seconds
16:11:55++ '[' -d .git ']'
16:11:55++ python3 ./build.py release-src
16:11:56Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
16:11:5716:11:57release-src-git:
16:11:57Releasing openmicroscopy-5.6.3-630-8fd4dc4071-ice36-b16
16:11:58 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-630-8fd4dc4071-ice36-b16.zip
16:11:58 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-630-8fd4dc4071-ice36-b16-base.zip
16:12:0016:12:00BUILD SUCCESSFUL
16:12:00Total time: 4 seconds
16:12:00++ echo BUILD_NUMBER=16
16:12:00++ echo OMERO_BRANCH=merge_ci
16:12:00++ git_info
16:12:00+++ git rev-parse HEAD
16:12:00++ HEAD=8fd4dc4071d73934bd60906f08ff753e47526873
16:12:00++ git log --max-count=1 8fd4dc4071d73934bd60906f08ff753e47526873
16:12:00++ env
16:12:00++ sort
16:12:00Archiving artifacts
16:12:17Finished: SUCCESS
