12:13:13Started by upstream project "Trigger" build number 2612:13:13originally caused by:
12:13:13 Started by user devspace12:13:13Running as SYSTEM
12:13:13Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
12:13:13The recommended git tool is: NONE
12:13:13No credentials specified
12:13:13 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10
12:13:14Fetching changes from the remote Git repository
12:13:14 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
12:13:14Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git12:13:14 > git --version # timeout=10
12:13:14 > git --version # 'git version 2.52.0'
12:13:14 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
12:13:17 > git rev-parse origin/merge_ci^{commit} # timeout=10
12:13:17Checking out Revision 6181d3b05547da0b2662463fdbb3787217a75c9e (origin/merge_ci)
12:13:17 > git config core.sparsecheckout # timeout=10
12:13:17 > git checkout -f 6181d3b05547da0b2662463fdbb3787217a75c9e # timeout=10
12:13:34Commit message: "Add version.properties to etc/omero.properties"
12:13:34 > git rev-list --no-walk 8fd4dc4071d73934bd60906f08ff753e47526873 # timeout=10
12:13:34Cleaning workspace
12:13:34 > git rev-parse --verify HEAD # timeout=10
12:13:34Resetting working tree
12:13:34 > git reset --hard # timeout=10
12:13:35 > git clean -fdx # timeout=10
12:14:11Copied 6 artifacts from "OMERO-python-superbuild-build" build number 1512:14:11[OMERO-build] $ /bin/bash -xe /tmp/jenkins10554609900615895625.sh
12:14:11+ mv omero-scripts/dist/omero_scripts-5.10.1.dev0.tar.gz .
12:14:11+ cd src
12:14:11+ export OMERO_BRANCH=merge_ci
12:14:11+ OMERO_BRANCH=merge_ci
12:14:11+ OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
12:14:11+ rm -rf /home/omero/workspace/OMERO-build/omero-virtualenv
12:14:43+ source /home/omero/settings.env
12:14:43++ OMERO_DB_HOST=pg
12:14:43++ OMERO_DB_USER=postgres
12:14:43++ OMERO_DB_PASS=
12:14:43++ OMERO_ROOT_PASS=omero
12:14:43++ OMERO_DATA_DIR=/OMERO
12:14:43++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
12:14:43+ python3.11 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
12:15:03+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl12:15:04Collecting zeroc-ice==3.6.5
12:15:05 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
12:15:07 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 11.6 MB/s eta 0:00:00
12:15:08Installing collected packages: zeroc-ice
12:15:11Successfully installed zeroc-ice-3.6.5
12:15:1112:15:11[notice] A new release of pip available: 22.3.1 -> 26.1.2
12:15:11[notice] To update, run: python3.11 -m pip install --upgrade pip
12:15:11+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U 'setuptools<66' omero-py
12:15:12Requirement already satisfied: setuptools<66 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (65.5.1)
12:15:13Collecting setuptools<66
12:15:13 Using cached setuptools-65.7.0-py3-none-any.whl (1.2 MB)
12:15:13Collecting omero-py
12:15:13 Using cached omero_py-5.22.1-py3-none-any.whl (2.8 MB)
12:15:13Collecting appdirs
12:15:13 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
12:15:13Collecting future
12:15:13 Using cached future-1.0.0-py3-none-any.whl (491 kB)
12:15:14Collecting numpy<3,>=2
12:15:14 Using cached numpy-2.4.6-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB)
12:15:15Collecting Pillow>=10.0.0
12:15:15 Using cached pillow-12.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (6.9 MB)
12:15:15Collecting PyYAML
12:15:15 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB)
12:15:15Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (from omero-py) (3.6.5)
12:15:15Collecting requests
12:15:15 Using cached requests-2.34.2-py3-none-any.whl (73 kB)
12:15:15Collecting portalocker
12:15:15 Using cached portalocker-3.2.0-py3-none-any.whl (22 kB)
12:15:16Collecting charset_normalizer<4,>=2
12:15:16 Using cached charset_normalizer-3.4.9-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (221 kB)
12:15:16Collecting idna<4,>=2.5
12:15:16 Using cached idna-3.18-py3-none-any.whl (65 kB)
12:15:16Collecting urllib3<3,>=1.26
12:15:16 Using cached urllib3-2.7.0-py3-none-any.whl (131 kB)
12:15:16Collecting certifi>=2023.5.7
12:15:17 Downloading certifi-2026.7.22-py3-none-any.whl (136 kB)
12:15:17 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 137.0/137.0 kB 1.2 MB/s eta 0:00:00
12:15:17Installing collected packages: appdirs, urllib3, setuptools, PyYAML, portalocker, Pillow, numpy, idna, future, charset_normalizer, certifi, requests, omero-py
12:15:18 Attempting uninstall: setuptools
12:15:18 Found existing installation: setuptools 65.5.1
12:15:19 Uninstalling setuptools-65.5.1:
12:15:19 Successfully uninstalled setuptools-65.5.1
12:16:13Successfully installed Pillow-12.3.0 PyYAML-6.0.3 appdirs-1.4.4 certifi-2026.7.22 charset_normalizer-3.4.9 future-1.0.0 idna-3.18 numpy-2.4.6 omero-py-5.22.1 portalocker-3.2.0 requests-2.34.2 setuptools-65.7.0 urllib3-2.7.0
12:16:1312:16:13[notice] A new release of pip available: 22.3.1 -> 26.1.2
12:16:13[notice] To update, run: python3.11 -m pip install --upgrade pip
12:16:14+ source /home/omero/workspace/OMERO-build/omero-virtualenv/bin/activate
12:16:14++ deactivate nondestructive
12:16:14++ '[' -n '' ']'
12:16:14++ '[' -n '' ']'
12:16:14++ hash -r
12:16:14++ '[' -n '' ']'
12:16:14++ unset VIRTUAL_ENV
12:16:14++ unset VIRTUAL_ENV_PROMPT
12:16:14++ '[' '!' nondestructive = nondestructive ']'
12:16:14++ VIRTUAL_ENV=/home/omero/workspace/OMERO-build/omero-virtualenv
12:16:14++ export VIRTUAL_ENV
12:16:14++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
12:16:14++ PATH=/home/omero/workspace/OMERO-build/omero-virtualenv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
12:16:14++ export PATH
12:16:14++ '[' -n '' ']'
12:16:14++ '[' -z '' ']'
12:16:14++ _OLD_VIRTUAL_PS1=
12:16:14++ PS1='(omero-virtualenv) '
12:16:14++ export PS1
12:16:14++ VIRTUAL_ENV_PROMPT='(omero-virtualenv) '
12:16:14++ export VIRTUAL_ENV_PROMPT
12:16:14++ hash -r
12:16:14+ source docs/hudson/OMERO.sh
12:16:14++ set -e
12:16:14++ set -u
12:16:14++ set -x
12:16:14++ source docs/hudson/functions.sh
12:16:14++ echo Building merge_ci
12:16:14Building merge_ci
12:16:14++ python3 ./build.py build-dev release-all
12:16:14Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
12:16:1512:16:15check-ivy:
12:16:15Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
12:16:15Created dir: /home/omero/workspace/OMERO-build/src/target
12:16:15:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
12:16:15:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
12:16:1712:16:17build-scons:
12:16:17Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
12:16:19No sub-builds to iterate on
12:16:20Entering /home/omero/workspace/OMERO-build/src/components/tools...
12:16:2012:16:20buildlist:
12:16:20:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
12:16:20:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
12:16:2012:16:20clean:
12:16:21Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
12:16:21Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
12:16:2212:16:22python-clean:
12:16:22WARNING: '' not a valid package name; please use only .-separated package names in setup.py
12:16:22/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-637-6181d3b055-ice36-b17') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
12:16:22 warnings.warn(
12:16:22running clean
12:16:22Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
12:16:22Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
12:16:2312:16:23python-clean:
12:16:23WARNING: '' not a valid package name; please use only .-separated package names in setup.py
12:16:23/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-637-6181d3b055-ice36-b17') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
12:16:23 warnings.warn(
12:16:23running clean
12:16:23Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
12:16:23Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
12:16:24Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
12:16:24Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
12:16:2412:16:24python-clean:
12:16:24WARNING: '' not a valid package name; please use only .-separated package names in setup.py
12:16:24/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-637-6181d3b055-ice36-b17') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
12:16:24 warnings.warn(
12:16:24running clean
12:16:24Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
12:16:24Deleting directory /home/omero/workspace/OMERO-build/src/target
12:16:2512:16:25build-scons:
12:16:25Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
12:16:2712:16:27build:
12:16:27No sub-builds to iterate on
12:16:27Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
12:16:28Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
12:16:28Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
12:16:28Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
12:16:2812:16:28tools-init:
12:16:28no-op
12:16:2912:16:29retrieve:
12:16:29:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
12:16:29:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
12:17:2712:17:27prepare:
12:17:27Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
12:17:27Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
12:17:27Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
12:17:27Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
12:17:27Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
12:17:27Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
12:17:27Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
12:17:27Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
12:17:27Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
12:17:27Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
12:17:27Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
12:17:27Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
12:17:27Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
12:17:27Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
12:17:27Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
12:17:2712:17:27pre-compile:
12:17:27Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
12:17:29Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
12:17:37Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
12:17:42Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
12:17:42Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
12:17:4512:17:45compile:
12:17:45no-op
12:17:4512:17:45package:
12:17:45Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
12:17:4912:17:49install:
12:17:49:: delivering :: omero#omero_client;working@efd076742dd1 :: 5.6.3-637-6181d3b055-ice36-b17 :: integration :: Wed Jul 22 12:16:28 UTC 2026
12:17:49 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
12:17:49:: publishing :: omero#omero_client
12:17:49 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-637-6181d3b055-ice36-b17/omero_client-5.6.3-637-6181d3b055-ice36-b17.jar
12:17:49 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-637-6181d3b055-ice36-b17/omero_client-5.6.3-637-6181d3b055-ice36-b17.xml
12:17:50Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
12:17:50Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
12:17:5012:17:50retrieve:
12:17:50:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
12:17:50:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
12:17:51Entering /home/omero/workspace/OMERO-build/src/components/tools...
12:17:5112:17:51dist:
12:17:51Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
12:17:51Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
12:17:51Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
12:17:51Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.10.1.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
12:17:51Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
12:17:52Copying 29 files to /home/omero/workspace/OMERO-build/src/dist
12:17:52Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
12:17:52Entering /home/omero/workspace/OMERO-build/src/components/tests...
12:17:53Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
12:17:5412:17:54copy-licenses:
12:17:54Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
12:17:54Created dir: /home/omero/workspace/OMERO-build/src/dist/share
12:17:54Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
12:17:5412:17:54copy-history:
12:17:54Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
12:17:5412:17:54copy-etc:
12:17:54Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
12:17:54Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
12:17:5512:17:55copy-sql:
12:17:55Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
12:18:0712:18:07copy-server:
12:18:07 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.1.9 won
12:18:1312:18:13copy-client:
12:18:13Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
12:18:17 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.1.9 won
12:18:2212:18:22update-version:
12:18:22Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
12:18:2212:18:22create-workdirs:
12:18:22Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
12:18:22Created dir: /home/omero/workspace/OMERO-build/src/dist/var
12:18:22Created dir: /home/omero/workspace/OMERO-build/src/dist/var/tmp
12:18:2212:18:22copy-luts:
12:18:22Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
12:18:22Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
12:18:2312:18:23test-compile:
12:18:23:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
12:18:23Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
12:18:24Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
12:18:24Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
12:18:24Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
12:18:24Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
12:18:24Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
12:18:25Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
12:18:2512:18:25testng-init:
12:18:25:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
12:18:25:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
12:18:3412:18:34,248 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.16
12:18:3412:18:34,251 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6aa09c35 - No custom configurators were discovered as a service.
12:18:3412:18:34,251 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6aa09c35 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
12:18:3412:18:34,255 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6aa09c35 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
12:18:3412:18:34,259 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
12:18:3412:18:34,261 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
12:18:3412:18:34,262 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6aa09c35 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 7 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
12:18:3412:18:34,262 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6aa09c35 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
12:18:3412:18:34,264 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6aa09c35 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
12:18:3412:18:34,267 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
12:18:3412:18:34,268 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
12:18:3412:18:34,270 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@22457838 - Resource [logback.xml] occurs multiple times on the classpath.
12:18:3412:18:34,270 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@22457838 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
12:18:3412:18:34,270 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@22457838 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
12:18:3412:18:34,508 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
12:18:3412:18:34,508 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
12:18:3412:18:34,531 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
12:18:3412:18:34,533 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@7a9794bd - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
12:18:3412:18:34,533 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@7a9794bd - Please move "immediateFlush" property into the enclosing appender.
12:18:3412:18:34,616 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@7a9794bd - Setting the "immediateFlush" property of the enclosing appender to true
12:18:3412:18:34,617 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
12:18:3412:18:34,617 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
12:18:3412:18:34,617 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
12:18:3412:18:34,617 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
12:18:3412:18:34,617 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
12:18:3412:18:34,617 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
12:18:3412:18:34,618 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@297727ab - End of configuration.
12:18:3412:18:34,621 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@47585784 - Registering current configuration as safe fallback point
12:18:3412:18:34,621 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6aa09c35 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 357 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
12:18:3412:18:34lifecycle.test-compile:
12:18:34Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
12:18:34Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
12:18:35warning: [options] bootstrap class path not set in conjunction with -source 8
12:18:35warning: [options] source value 8 is obsolete and will be removed in a future release
12:18:35warning: [options] target value 8 is obsolete and will be removed in a future release
12:18:35warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
12:18:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
12:18:36import omero.grid.RawAccessRequest;
12:18:36 ^
12:18:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
12:18:37import omero.grid.RawAccessRequest;
12:18:37 ^
12:18:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
12:18:37import omero.grid.RawAccessRequest;
12:18:37 ^
12:18:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
12:18:37import omero.model.ImportJob;
12:18:37 ^
12:18:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
12:18:37import omero.model.ImportJobI;
12:18:37 ^
12:18:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated
12:18:38 IObject link = (IObject) linkClass.newInstance();
12:18:38 ^
12:18:38 where T is a type-variable:
12:18:38 T extends Object declared in class Class
12:18:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
12:18:38 T copy = (T) obj.getClass().newInstance();
12:18:38 ^
12:18:38 where T is a type-variable:
12:18:38 T extends Object declared in class Class
12:18:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
12:18:38 RawAccessRequest raw = new RawAccessRequest();
12:18:38 ^
12:18:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
12:18:38 RawAccessRequest raw = new RawAccessRequest();
12:18:38 ^
12:18:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
12:18:38 raw.repoUuid = legacy.root().getHash().getValue();
12:18:38 ^
12:18:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
12:18:38 raw.command = "rm";
12:18:38 ^
12:18:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
12:18:38 raw.args = Arrays.asList(path);
12:18:38 ^
12:18:39/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
12:18:39 final IObject link = linkClass.newInstance();
12:18:39 ^
12:18:39 where T is a type-variable:
12:18:39 T extends Object declared in class Class
12:18:39/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
12:18:39 originalLink.setChild(annotationClass.newInstance());
12:18:39 ^
12:18:39 where T is a type-variable:
12:18:39 T extends Object declared in class Class
12:18:39/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
12:18:39 RoiResult r = svc.findByImage(id, new RoiOptions());
12:18:39 ^
12:18:40/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
12:18:40 final RawAccessRequest request = new RawAccessRequest();
12:18:40 ^
12:18:40/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
12:18:40 final RawAccessRequest request = new RawAccessRequest();
12:18:40 ^
12:18:40/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
12:18:40 request.repoUuid = repo.root().getHash().getValue();
12:18:40 ^
12:18:40/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
12:18:40 request.command = "exists";
12:18:40 ^
12:18:40/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
12:18:40 request.args = Collections.singletonList(dirPath);
12:18:40 ^
12:18:40/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
12:18:40 final RawAccessRequest request = new RawAccessRequest();
12:18:40 ^
12:18:40/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
12:18:40 final RawAccessRequest request = new RawAccessRequest();
12:18:40 ^
12:18:40/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
12:18:40 request.repoUuid = repo.root().getHash().getValue();
12:18:40 ^
12:18:40/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
12:18:40 request.command = "exists";
12:18:40 ^
12:18:40/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
12:18:40 request.args = Collections.singletonList(dirName);
12:18:40 ^
12:18:40/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
12:18:40 final ImportJob importJob = new ImportJobI();
12:18:40 ^
12:18:40/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
12:18:40 final ImportJob importJob = new ImportJobI();
12:18:40 ^
12:18:40/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
12:18:40 importJob.setImageName(omero.rtypes.rstring(name));
12:18:40 ^
12:18:40/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
12:18:40 importJob.setImageDescription(omero.rtypes.rstring(desc));
12:18:40 ^
12:18:40/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
12:18:40 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
12:18:40 ^
12:18:40/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
12:18:40 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
12:18:40 ^
12:18:40/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
12:18:40 final String savedName = sent.getImageName().getValue().toString();
12:18:40 ^
12:18:40/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
12:18:40 final String savedDesc = sent.getImageDescription().getValue().toString();
12:18:40 ^
12:18:40/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
12:18:40 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
12:18:40 ^
12:18:40/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
12:18:40 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
12:18:40 ^
12:18:40/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
12:18:40 final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
12:18:40 ^
12:18:40/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
12:18:40 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
12:18:40 ^
12:18:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
12:18:41 RoiResult r = svc.findByImage(image.getId().getValue(),
12:18:41 ^
12:18:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
12:18:41 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
12:18:41 ^
12:18:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
12:18:41 l = svc.getRoiMeasurements(image.getId().getValue(), options);
12:18:41 ^
12:18:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
12:18:41 l = svc.getRoiMeasurements(image.getId().getValue(), options);
12:18:41 ^
12:18:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
12:18:41 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
12:18:41 ^
12:18:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
12:18:41 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
12:18:41 ^
12:18:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
12:18:41 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
12:18:41 ^
12:18:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
12:18:41 table = svc.getTable(f.getId().getValue());
12:18:41 ^
12:18:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
12:18:41 RoiResult r = svc.findByImage(image.getId().getValue(),
12:18:41 ^
12:18:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
12:18:41 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
12:18:41 ^
12:18:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
12:18:41 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
12:18:41 ^
12:18:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
12:18:41 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
12:18:41 ^
12:18:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
12:18:41 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
12:18:41 ^
12:18:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
12:18:41 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
12:18:41 ^
12:18:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
12:18:41 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
12:18:41 ^
12:18:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
12:18:41 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
12:18:41 ^
12:18:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
12:18:41 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
12:18:41 ^
12:18:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Long(long) in Long has been deprecated and marked for removal
12:18:41 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
12:18:41 ^
12:18:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
12:18:41 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
12:18:41 ^
12:18:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
12:18:41 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
12:18:41 ^
12:18:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
12:18:41 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
12:18:41 ^
12:18:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
12:18:41 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
12:18:41 ^
12:18:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
12:18:41 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
12:18:41 ^
12:18:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
12:18:41 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
12:18:41 ^
12:18:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
12:18:41 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
12:18:41 ^
12:18:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
12:18:41 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
12:18:41 ^
12:18:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
12:18:41 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
12:18:41 ^
12:18:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
12:18:41 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
12:18:41 ^
12:18:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
12:18:41 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
12:18:41 ^
12:18:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
12:18:41 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
12:18:41 ^
12:18:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
12:18:41 svc.getShapeStatsRestricted(
12:18:41 ^
12:18:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
12:18:41 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
12:18:41 ^
12:18:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
12:18:41 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
12:18:41 ^
12:18:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
12:18:41 request.typesToIgnore = Collections.singletonList("TagAnnotation");
12:18:41 ^
12:18:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
12:18:41 request.typesToIgnore = Collections.singletonList("IAnnotationLink");
12:18:41 ^
12:18:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
12:18:41 request.typesToIgnore = Collections.singletonList("Annotation");
12:18:41 ^
12:18:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
12:18:41 request.typesToIgnore = Collections.singletonList("Annotation");
12:18:41 ^
12:18:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
12:18:41 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
12:18:41 ^
12:18:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
12:18:41 p2.setRelatedTo(p1);
12:18:41 ^
12:18:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
12:18:41 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
12:18:41 ^
12:18:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
12:18:41 pixels1.setRelatedTo(pixels2);
12:18:41 ^
12:18:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
12:18:41 Pixels pixels = pixels1.getRelatedTo();
12:18:41 ^
12:18:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
12:18:41 Assert.assertNull(pixels1.getRelatedTo());
12:18:41 ^
12:18:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
12:18:41 pixels1.setRelatedTo(pixels2);
12:18:41 ^
12:18:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
12:18:41 Pixels pixels = pixels1.getRelatedTo();
12:18:41 ^
12:18:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
12:18:41 Assert.assertNull(pixels1.getRelatedTo());
12:18:41 ^
12:18:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
12:18:41 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
12:18:41 ^
12:18:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
12:18:41 l = svc.getRoiMeasurements(image.getId().getValue(), options);
12:18:41 ^
12:18:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
12:18:41 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
12:18:41 ^
12:18:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
12:18:41 l = svc.getRoiMeasurements(image.getId().getValue(), options);
12:18:41 ^
12:18:42Note: Some input files use unchecked or unsafe operations.
12:18:42Note: Recompile with -Xlint:unchecked for details.
12:18:4291 warnings
12:18:42Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_1740174002.tmp
12:18:42Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar
12:18:42:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
12:18:42:: delivering :: omero#OmeroJava-test;working@efd076742dd1 :: 5.6.3-637-6181d3b055-ice36-b17 :: integration :: Wed Jul 22 12:18:24 UTC 2026
12:18:42 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml
12:18:42:: publishing :: omero#OmeroJava-test
12:18:42 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-637-6181d3b055-ice36-b17.jar
12:18:42 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-637-6181d3b055-ice36-b17.xml
12:18:4212:18:42build-eclipse:
12:18:42No sub-builds to iterate on
12:18:43Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
12:18:4312:18:43retrieve:
12:18:43:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
12:18:43:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
12:18:4812:18:48prepare:
12:18:48Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
12:18:5112:18:51release-clients:
12:18:51Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-637-6181d3b055-ice36-b17.zip
12:18:5812:18:58release-zip:
12:18:58Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-637-6181d3b055-ice36-b17.zip
12:19:1012:19:10BUILD SUCCESSFUL
12:19:10Total time: 2 minutes 55 seconds
12:19:10++ '[' -d .git ']'
12:19:10++ python3 ./build.py release-src
12:19:10Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
12:19:1112:19:11release-src-git:
12:19:11Releasing openmicroscopy-5.6.3-637-6181d3b055-ice36-b17
12:19:12 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-637-6181d3b055-ice36-b17.zip
12:19:12 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-637-6181d3b055-ice36-b17-base.zip
12:19:1412:19:14BUILD SUCCESSFUL
12:19:14Total time: 3 seconds
12:19:14++ echo BUILD_NUMBER=17
12:19:14++ echo OMERO_BRANCH=merge_ci
12:19:14++ git_info
12:19:14+++ git rev-parse HEAD
12:19:14++ HEAD=6181d3b05547da0b2662463fdbb3787217a75c9e
12:19:14++ git log --max-count=1 6181d3b05547da0b2662463fdbb3787217a75c9e
12:19:14++ env
12:19:14++ sort
12:19:14Archiving artifacts
12:19:31Finished: SUCCESS
