12:28:36Started by upstream project "Trigger" build number 4112:28:36originally caused by:
12:28:36 Started by user devspace12:28:36Running as SYSTEM
12:28:36Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
12:28:36The recommended git tool is: NONE
12:28:36No credentials specified
12:28:36 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10
12:28:36Fetching changes from the remote Git repository
12:28:36 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
12:28:36Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git12:28:36 > git --version # timeout=10
12:28:36 > git --version # 'git version 2.47.3'
12:28:36 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
12:28:38 > git rev-parse origin/merge_ci^{commit} # timeout=10
12:28:38Checking out Revision c0aeca986d9574a81c29dd0d18883d4d2192718c (origin/merge_ci)
12:28:38 > git config core.sparsecheckout # timeout=10
12:28:38 > git checkout -f c0aeca986d9574a81c29dd0d18883d4d2192718c # timeout=10
12:28:38Commit message: "Add version.properties to etc/omero.properties"
12:28:38 > git rev-list --no-walk 31c47ae256d955673c71573ec83cb3d4794da9c4 # timeout=10
12:28:38Cleaning workspace
12:28:38 > git rev-parse --verify HEAD # timeout=10
12:28:38Resetting working tree
12:28:38 > git reset --hard # timeout=10
12:28:39 > git clean -fdx # timeout=10
12:28:39Copied 6 artifacts from "OMERO-python-superbuild-build" build number 1812:28:39[OMERO-build] $ /bin/bash -xe /tmp/jenkins9830696532227793211.sh
12:28:39+ mv omero-scripts/dist/omero_scripts-5.9.2.dev0.tar.gz .
12:28:39+ cd src
12:28:39+ export OMERO_BRANCH=merge_ci
12:28:39+ OMERO_BRANCH=merge_ci
12:28:39+ OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
12:28:39+ rm -rf /home/omero/workspace/OMERO-build/omero-virtualenv
12:28:39+ source /home/omero/settings.env
12:28:39++ OMERO_DB_HOST=pg
12:28:39++ OMERO_DB_USER=postgres
12:28:39++ OMERO_DB_PASS=
12:28:39++ OMERO_ROOT_PASS=omero
12:28:39++ OMERO_DATA_DIR=/OMERO
12:28:39++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
12:28:39+ python3.11 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
12:28:42+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl12:28:43Collecting zeroc-ice==3.6.5
12:28:43 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
12:28:45 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 19.5 MB/s eta 0:00:00
12:28:45Installing collected packages: zeroc-ice
12:28:46Successfully installed zeroc-ice-3.6.5
12:28:4612:28:46[notice] A new release of pip available: 22.3.1 -> 25.3
12:28:46[notice] To update, run: python3.11 -m pip install --upgrade pip
12:28:46+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U 'setuptools<66' omero-py
12:28:46Requirement already satisfied: setuptools<66 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (65.5.1)
12:28:47Collecting setuptools<66
12:28:47 Using cached setuptools-65.7.0-py3-none-any.whl (1.2 MB)
12:28:47Collecting omero-py
12:28:47 Using cached omero_py-5.21.3-py3-none-any.whl (2.8 MB)
12:28:47Collecting appdirs
12:28:47 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
12:28:47Collecting future
12:28:47 Using cached future-1.0.0-py3-none-any.whl (491 kB)
12:28:48Collecting numpy<3
12:28:48 Using cached numpy-2.4.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.7 MB)
12:28:48Collecting Pillow>=10.0.0
12:28:48 Using cached pillow-12.1.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (7.0 MB)
12:28:48Collecting PyYAML
12:28:48 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB)
12:28:48Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (from omero-py) (3.6.5)
12:28:49Collecting requests
12:28:49 Using cached requests-2.32.5-py3-none-any.whl (64 kB)
12:28:49Collecting portalocker
12:28:49 Using cached portalocker-3.2.0-py3-none-any.whl (22 kB)
12:28:49Collecting charset_normalizer<4,>=2
12:28:49 Using cached charset_normalizer-3.4.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (151 kB)
12:28:49Collecting idna<4,>=2.5
12:28:49 Using cached idna-3.11-py3-none-any.whl (71 kB)
12:28:49Collecting urllib3<3,>=1.21.1
12:28:49 Using cached urllib3-2.6.3-py3-none-any.whl (131 kB)
12:28:49Collecting certifi>=2017.4.17
12:28:49 Using cached certifi-2026.1.4-py3-none-any.whl (152 kB)
12:28:49Installing collected packages: appdirs, urllib3, setuptools, PyYAML, portalocker, Pillow, numpy, idna, future, charset_normalizer, certifi, requests, omero-py
12:28:49 Attempting uninstall: setuptools
12:28:49 Found existing installation: setuptools 65.5.1
12:28:50 Uninstalling setuptools-65.5.1:
12:28:50 Successfully uninstalled setuptools-65.5.1
12:28:55Successfully installed Pillow-12.1.0 PyYAML-6.0.3 appdirs-1.4.4 certifi-2026.1.4 charset_normalizer-3.4.4 future-1.0.0 idna-3.11 numpy-2.4.1 omero-py-5.21.3 portalocker-3.2.0 requests-2.32.5 setuptools-65.7.0 urllib3-2.6.3
12:28:5512:28:55[notice] A new release of pip available: 22.3.1 -> 25.3
12:28:55[notice] To update, run: python3.11 -m pip install --upgrade pip
12:28:55+ source /home/omero/workspace/OMERO-build/omero-virtualenv/bin/activate
12:28:55++ deactivate nondestructive
12:28:55++ '[' -n '' ']'
12:28:55++ '[' -n '' ']'
12:28:55++ hash -r
12:28:55++ '[' -n '' ']'
12:28:55++ unset VIRTUAL_ENV
12:28:55++ unset VIRTUAL_ENV_PROMPT
12:28:55++ '[' '!' nondestructive = nondestructive ']'
12:28:55++ VIRTUAL_ENV=/home/omero/workspace/OMERO-build/omero-virtualenv
12:28:55++ export VIRTUAL_ENV
12:28:55++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
12:28:55++ PATH=/home/omero/workspace/OMERO-build/omero-virtualenv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
12:28:55++ export PATH
12:28:55++ '[' -n '' ']'
12:28:55++ '[' -z '' ']'
12:28:55++ _OLD_VIRTUAL_PS1=
12:28:55++ PS1='(omero-virtualenv) '
12:28:55++ export PS1
12:28:55++ VIRTUAL_ENV_PROMPT='(omero-virtualenv) '
12:28:55++ export VIRTUAL_ENV_PROMPT
12:28:55++ hash -r
12:28:55+ source docs/hudson/OMERO.sh
12:28:55++ set -e
12:28:55++ set -u
12:28:55++ set -x
12:28:55++ source docs/hudson/functions.sh
12:28:55++ echo Building merge_ci
12:28:55Building merge_ci
12:28:55++ python3 ./build.py build-dev release-all
12:28:55Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
12:28:5612:28:56check-ivy:
12:28:56Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
12:28:56Created dir: /home/omero/workspace/OMERO-build/src/target
12:28:56:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
12:28:56:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
12:28:5712:28:57build-scons:
12:28:57Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
12:28:57No sub-builds to iterate on
12:28:57Entering /home/omero/workspace/OMERO-build/src/components/tools...
12:28:5712:28:57buildlist:
12:28:57:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
12:28:57:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
12:28:5712:28:57clean:
12:28:57Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
12:28:57Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
12:28:5812:28:58python-clean:
12:28:58WARNING: '' not a valid package name; please use only .-separated package names in setup.py
12:28:58/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-578-c0aeca986d-ice36-b18') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
12:28:58 warnings.warn(
12:28:58running clean
12:28:58Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
12:28:58Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
12:28:5812:28:58python-clean:
12:28:58WARNING: '' not a valid package name; please use only .-separated package names in setup.py
12:28:58/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-578-c0aeca986d-ice36-b18') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
12:28:58 warnings.warn(
12:28:58running clean
12:28:58Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
12:28:58Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
12:28:58Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
12:28:58Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
12:28:5812:28:58python-clean:
12:28:58WARNING: '' not a valid package name; please use only .-separated package names in setup.py
12:28:58/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-578-c0aeca986d-ice36-b18') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
12:28:58 warnings.warn(
12:28:58running clean
12:28:58Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
12:28:58Deleting directory /home/omero/workspace/OMERO-build/src/target
12:28:5812:28:58build-scons:
12:28:58Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
12:28:5812:28:58build:
12:28:58No sub-builds to iterate on
12:28:58Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
12:28:59Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
12:28:59Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
12:28:59Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
12:28:5912:28:59tools-init:
12:28:59no-op
12:28:5912:28:59retrieve:
12:28:59:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
12:28:59:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
12:29:4412:29:44prepare:
12:29:44Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
12:29:44Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
12:29:44Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
12:29:44Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
12:29:44Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
12:29:44Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
12:29:44Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
12:29:44Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
12:29:44Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
12:29:44Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
12:29:44Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
12:29:44Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
12:29:44Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
12:29:44Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
12:29:44Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
12:29:4412:29:44pre-compile:
12:29:44Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
12:29:44Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
12:29:44Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
12:29:45Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
12:29:45Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
12:29:4512:29:45compile:
12:29:45no-op
12:29:4512:29:45package:
12:29:45Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
12:29:4512:29:45install:
12:29:45:: delivering :: omero#omero_client;working@57f60e06d356 :: 5.6.3-578-c0aeca986d-ice36-b18 :: integration :: Wed Jan 14 12:28:59 UTC 2026
12:29:45 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
12:29:45:: publishing :: omero#omero_client
12:29:45 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-578-c0aeca986d-ice36-b18/omero_client-5.6.3-578-c0aeca986d-ice36-b18.jar
12:29:45 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-578-c0aeca986d-ice36-b18/omero_client-5.6.3-578-c0aeca986d-ice36-b18.xml
12:29:45Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
12:29:45Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
12:29:4512:29:45retrieve:
12:29:45:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
12:29:45:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
12:29:46Entering /home/omero/workspace/OMERO-build/src/components/tools...
12:29:4612:29:46dist:
12:29:46Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
12:29:46Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
12:29:46Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
12:29:46Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.9.2.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
12:29:46Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
12:29:46Copying 29 files to /home/omero/workspace/OMERO-build/src/dist
12:29:46Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
12:29:46Entering /home/omero/workspace/OMERO-build/src/components/tests...
12:29:46Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
12:29:4612:29:46copy-licenses:
12:29:46Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
12:29:46Created dir: /home/omero/workspace/OMERO-build/src/dist/share
12:29:46Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
12:29:4612:29:46copy-history:
12:29:46Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
12:29:4612:29:46copy-etc:
12:29:46Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
12:29:46Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
12:29:4612:29:46copy-sql:
12:29:46Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
12:29:5312:29:53copy-server:
12:29:53 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.1.9 won
12:29:5412:29:54copy-client:
12:29:54Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
12:29:55 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.1.9 won
12:29:5512:29:55update-version:
12:29:55Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
12:29:5512:29:55create-workdirs:
12:29:55Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
12:29:55Created dir: /home/omero/workspace/OMERO-build/src/dist/var
12:29:55Created dir: /home/omero/workspace/OMERO-build/src/dist/var/tmp
12:29:5512:29:55copy-luts:
12:29:55Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
12:29:55Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
12:29:5512:29:55test-compile:
12:29:55:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
12:29:55Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
12:29:55Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
12:29:55Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
12:29:55Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
12:29:55Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
12:29:55Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
12:29:55Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
12:29:5512:29:55testng-init:
12:29:55:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
12:29:55:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
12:29:5912:29:58,894 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.16
12:29:5912:29:58,896 |-INFO in ch.qos.logback.classic.util.ContextInitializer@68017525 - No custom configurators were discovered as a service.
12:29:5912:29:58,896 |-INFO in ch.qos.logback.classic.util.ContextInitializer@68017525 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
12:29:5912:29:58,899 |-INFO in ch.qos.logback.classic.util.ContextInitializer@68017525 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
12:29:5912:29:58,899 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
12:29:5912:29:58,899 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
12:29:5912:29:58,900 |-INFO in ch.qos.logback.classic.util.ContextInitializer@68017525 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
12:29:5912:29:58,900 |-INFO in ch.qos.logback.classic.util.ContextInitializer@68017525 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
12:29:5912:29:58,901 |-INFO in ch.qos.logback.classic.util.ContextInitializer@68017525 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
12:29:5912:29:58,902 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
12:29:5912:29:58,902 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
12:29:5912:29:58,903 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@434d5eb9 - Resource [logback.xml] occurs multiple times on the classpath.
12:29:5912:29:58,903 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@434d5eb9 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
12:29:5912:29:58,903 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@434d5eb9 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
12:29:5912:29:59,102 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
12:29:5912:29:59,102 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
12:29:5912:29:59,119 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
12:29:5912:29:59,121 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@5914a346 - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
12:29:5912:29:59,121 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@5914a346 - Please move "immediateFlush" property into the enclosing appender.
12:29:5912:29:59,176 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@5914a346 - Setting the "immediateFlush" property of the enclosing appender to true
12:29:5912:29:59,177 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
12:29:5912:29:59,177 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
12:29:5912:29:59,177 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
12:29:5912:29:59,177 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
12:29:5912:29:59,177 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
12:29:5912:29:59,177 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
12:29:5912:29:59,178 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5242079e - End of configuration.
12:29:5912:29:59,180 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@3109f8ae - Registering current configuration as safe fallback point
12:29:5912:29:59,180 |-INFO in ch.qos.logback.classic.util.ContextInitializer@68017525 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 279 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
12:29:5912:29:59lifecycle.test-compile:
12:29:59Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
12:29:59Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
12:29:59warning: [options] bootstrap class path not set in conjunction with -source 8
12:30:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
12:30:00import omero.grid.RawAccessRequest;
12:30:00 ^
12:30:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
12:30:00import omero.grid.RawAccessRequest;
12:30:00 ^
12:30:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
12:30:00import omero.grid.RawAccessRequest;
12:30:00 ^
12:30:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
12:30:00import omero.model.ImportJob;
12:30:00 ^
12:30:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
12:30:00import omero.model.ImportJobI;
12:30:00 ^
12:30:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated
12:30:01 IObject link = (IObject) linkClass.newInstance();
12:30:01 ^
12:30:01 where T is a type-variable:
12:30:01 T extends Object declared in class Class
12:30:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
12:30:01 T copy = (T) obj.getClass().newInstance();
12:30:01 ^
12:30:01 where T is a type-variable:
12:30:01 T extends Object declared in class Class
12:30:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
12:30:01 RawAccessRequest raw = new RawAccessRequest();
12:30:01 ^
12:30:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
12:30:01 RawAccessRequest raw = new RawAccessRequest();
12:30:01 ^
12:30:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
12:30:01 raw.repoUuid = legacy.root().getHash().getValue();
12:30:01 ^
12:30:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
12:30:01 raw.command = "rm";
12:30:01 ^
12:30:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
12:30:01 raw.args = Arrays.asList(path);
12:30:01 ^
12:30:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
12:30:02 final IObject link = linkClass.newInstance();
12:30:02 ^
12:30:02 where T is a type-variable:
12:30:02 T extends Object declared in class Class
12:30:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
12:30:02 originalLink.setChild(annotationClass.newInstance());
12:30:02 ^
12:30:02 where T is a type-variable:
12:30:02 T extends Object declared in class Class
12:30:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
12:30:02 RoiResult r = svc.findByImage(id, new RoiOptions());
12:30:02 ^
12:30:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
12:30:02 final RawAccessRequest request = new RawAccessRequest();
12:30:02 ^
12:30:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
12:30:02 final RawAccessRequest request = new RawAccessRequest();
12:30:02 ^
12:30:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
12:30:02 request.repoUuid = repo.root().getHash().getValue();
12:30:02 ^
12:30:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
12:30:02 request.command = "exists";
12:30:02 ^
12:30:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
12:30:02 request.args = Collections.singletonList(dirPath);
12:30:02 ^
12:30:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
12:30:02 final RawAccessRequest request = new RawAccessRequest();
12:30:02 ^
12:30:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
12:30:02 final RawAccessRequest request = new RawAccessRequest();
12:30:02 ^
12:30:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
12:30:02 request.repoUuid = repo.root().getHash().getValue();
12:30:02 ^
12:30:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
12:30:02 request.command = "exists";
12:30:02 ^
12:30:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
12:30:02 request.args = Collections.singletonList(dirName);
12:30:02 ^
12:30:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
12:30:02 final ImportJob importJob = new ImportJobI();
12:30:02 ^
12:30:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
12:30:02 final ImportJob importJob = new ImportJobI();
12:30:02 ^
12:30:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
12:30:02 importJob.setImageName(omero.rtypes.rstring(name));
12:30:02 ^
12:30:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
12:30:02 importJob.setImageDescription(omero.rtypes.rstring(desc));
12:30:02 ^
12:30:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
12:30:02 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
12:30:02 ^
12:30:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
12:30:02 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
12:30:02 ^
12:30:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
12:30:02 final String savedName = sent.getImageName().getValue().toString();
12:30:02 ^
12:30:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
12:30:02 final String savedDesc = sent.getImageDescription().getValue().toString();
12:30:02 ^
12:30:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
12:30:02 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
12:30:02 ^
12:30:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
12:30:02 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
12:30:02 ^
12:30:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
12:30:02 final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
12:30:02 ^
12:30:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
12:30:02 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
12:30:02 ^
12:30:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
12:30:03 RoiResult r = svc.findByImage(image.getId().getValue(),
12:30:03 ^
12:30:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
12:30:03 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
12:30:03 ^
12:30:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
12:30:03 l = svc.getRoiMeasurements(image.getId().getValue(), options);
12:30:03 ^
12:30:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
12:30:03 l = svc.getRoiMeasurements(image.getId().getValue(), options);
12:30:03 ^
12:30:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
12:30:03 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
12:30:03 ^
12:30:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
12:30:03 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
12:30:03 ^
12:30:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
12:30:03 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
12:30:03 ^
12:30:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
12:30:03 table = svc.getTable(f.getId().getValue());
12:30:03 ^
12:30:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
12:30:03 RoiResult r = svc.findByImage(image.getId().getValue(),
12:30:03 ^
12:30:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
12:30:03 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
12:30:03 ^
12:30:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
12:30:03 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
12:30:03 ^
12:30:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
12:30:03 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
12:30:03 ^
12:30:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
12:30:03 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
12:30:03 ^
12:30:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
12:30:03 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
12:30:03 ^
12:30:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
12:30:03 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
12:30:03 ^
12:30:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
12:30:03 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
12:30:03 ^
12:30:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
12:30:03 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
12:30:03 ^
12:30:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Long(long) in Long has been deprecated and marked for removal
12:30:03 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
12:30:03 ^
12:30:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
12:30:03 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
12:30:03 ^
12:30:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
12:30:03 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
12:30:03 ^
12:30:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
12:30:03 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
12:30:03 ^
12:30:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
12:30:03 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
12:30:03 ^
12:30:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
12:30:03 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
12:30:03 ^
12:30:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
12:30:03 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
12:30:03 ^
12:30:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
12:30:03 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
12:30:03 ^
12:30:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
12:30:03 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
12:30:03 ^
12:30:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
12:30:03 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
12:30:03 ^
12:30:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
12:30:03 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
12:30:03 ^
12:30:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
12:30:03 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
12:30:03 ^
12:30:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
12:30:03 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
12:30:03 ^
12:30:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
12:30:03 svc.getShapeStatsRestricted(
12:30:03 ^
12:30:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
12:30:03 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
12:30:03 ^
12:30:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
12:30:03 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
12:30:03 ^
12:30:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
12:30:03 request.typesToIgnore = Collections.singletonList("TagAnnotation");
12:30:03 ^
12:30:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
12:30:03 request.typesToIgnore = Collections.singletonList("IAnnotationLink");
12:30:03 ^
12:30:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
12:30:03 request.typesToIgnore = Collections.singletonList("Annotation");
12:30:03 ^
12:30:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
12:30:03 request.typesToIgnore = Collections.singletonList("Annotation");
12:30:03 ^
12:30:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
12:30:03 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
12:30:03 ^
12:30:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
12:30:03 p2.setRelatedTo(p1);
12:30:03 ^
12:30:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
12:30:03 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
12:30:03 ^
12:30:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
12:30:03 pixels1.setRelatedTo(pixels2);
12:30:03 ^
12:30:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
12:30:03 Pixels pixels = pixels1.getRelatedTo();
12:30:03 ^
12:30:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
12:30:03 Assert.assertNull(pixels1.getRelatedTo());
12:30:03 ^
12:30:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
12:30:03 pixels1.setRelatedTo(pixels2);
12:30:03 ^
12:30:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
12:30:03 Pixels pixels = pixels1.getRelatedTo();
12:30:03 ^
12:30:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
12:30:03 Assert.assertNull(pixels1.getRelatedTo());
12:30:03 ^
12:30:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
12:30:03 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
12:30:03 ^
12:30:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
12:30:03 l = svc.getRoiMeasurements(image.getId().getValue(), options);
12:30:03 ^
12:30:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
12:30:03 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
12:30:03 ^
12:30:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
12:30:03 l = svc.getRoiMeasurements(image.getId().getValue(), options);
12:30:03 ^
12:30:04Note: Some input files use unchecked or unsafe operations.
12:30:04Note: Recompile with -Xlint:unchecked for details.
12:30:0488 warnings
12:30:04Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_1034471837.tmp
12:30:04Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar
12:30:04:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
12:30:04:: delivering :: omero#OmeroJava-test;working@57f60e06d356 :: 5.6.3-578-c0aeca986d-ice36-b18 :: integration :: Wed Jan 14 12:29:55 UTC 2026
12:30:04 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml
12:30:04:: publishing :: omero#OmeroJava-test
12:30:04 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-578-c0aeca986d-ice36-b18.jar
12:30:04 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-578-c0aeca986d-ice36-b18.xml
12:30:0412:30:04build-eclipse:
12:30:04No sub-builds to iterate on
12:30:04Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
12:30:0412:30:04retrieve:
12:30:04:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
12:30:04:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
12:30:0612:30:06prepare:
12:30:06Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
12:30:0712:30:07release-clients:
12:30:07Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-578-c0aeca986d-ice36-b18.zip
12:30:1212:30:12release-zip:
12:30:12Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-578-c0aeca986d-ice36-b18.zip
12:30:2212:30:22BUILD SUCCESSFUL
12:30:22Total time: 1 minute 26 seconds
12:30:22++ '[' -d .git ']'
12:30:22++ python3 ./build.py release-src
12:30:22Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
12:30:2212:30:22release-src-git:
12:30:22Releasing openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18
12:30:24 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18.zip
12:30:24 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18-base.zip
12:30:2512:30:25BUILD SUCCESSFUL
12:30:25Total time: 3 seconds
12:30:25++ echo BUILD_NUMBER=18
12:30:25++ echo OMERO_BRANCH=merge_ci
12:30:25++ git_info
12:30:25+++ git rev-parse HEAD
12:30:25++ HEAD=c0aeca986d9574a81c29dd0d18883d4d2192718c
12:30:25++ git log --max-count=1 c0aeca986d9574a81c29dd0d18883d4d2192718c
12:30:25++ env
12:30:25++ sort
12:30:25Archiving artifacts
12:30:42Finished: SUCCESS
