05:38:34Started by upstream project "Trigger" build number 22505:38:34originally caused by:
05:38:34 Started by user devspace05:38:34Running as SYSTEM
05:38:34Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
05:38:34The recommended git tool is: NONE
05:38:34No credentials specified
05:38:34 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10
05:38:34Fetching changes from the remote Git repository
05:38:34 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
05:38:34Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git05:38:34 > git --version # timeout=10
05:38:34 > git --version # 'git version 2.43.5'
05:38:34 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
05:38:40 > git rev-parse origin/merge_ci^{commit} # timeout=10
05:38:40Checking out Revision f903836379e30ec41d5a27a8576ac6abd4547ac9 (origin/merge_ci)
05:38:40 > git config core.sparsecheckout # timeout=10
05:38:40 > git checkout -f f903836379e30ec41d5a27a8576ac6abd4547ac9 # timeout=10
05:38:41Commit message: "Add version.properties to etc/omero.properties"
05:38:41 > git rev-list --no-walk e314753ae8ec581b69c3beaff573e6a3a6170439 # timeout=10
05:38:41Cleaning workspace
05:38:41 > git rev-parse --verify HEAD # timeout=10
05:38:41Resetting working tree
05:38:41 > git reset --hard # timeout=10
05:38:41 > git clean -fdx # timeout=10
05:38:41Copied 6 artifacts from "OMERO-python-superbuild-build" build number 18405:38:41[OMERO-build] $ /bin/bash -xe /tmp/jenkins9332998704728676737.sh
05:38:41+ mv omero-scripts/dist/omero_scripts-5.8.4.dev0.tar.gz .
05:38:41+ cd src
05:38:41+ export OMERO_BRANCH=merge_ci
05:38:41+ OMERO_BRANCH=merge_ci
05:38:41+ OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
05:38:41+ source /home/omero/settings.env
05:38:41++ OMERO_DB_HOST=pg
05:38:41++ OMERO_DB_USER=postgres
05:38:41++ OMERO_DB_PASS=
05:38:41++ OMERO_ROOT_PASS=omero
05:38:41++ OMERO_DATA_DIR=/OMERO
05:38:41++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
05:38:41+ python3 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
05:38:44+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl05:38:46Collecting zeroc-ice==3.6.5
05:38:47 Downloading https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl (31.3 MB)
05:38:48WARNING: You are using pip version 21.2.3; however, version 24.2 is available.
05:38:48You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command.
05:38:49+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U setuptools omero-py
05:38:49Requirement already satisfied: setuptools in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (75.1.0)
05:38:50Requirement already satisfied: omero-py in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (5.19.5)
05:38:50Requirement already satisfied: appdirs in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.4.4)
05:38:50Requirement already satisfied: requests in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.31.0)
05:38:50Requirement already satisfied: future in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.0.0)
05:38:50Requirement already satisfied: Pillow>=10.0.0 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (10.2.0)
05:38:50Requirement already satisfied: portalocker in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.8.2)
05:38:50Requirement already satisfied: urllib3<2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.18)
05:38:50Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (3.6.5)
05:38:50Requirement already satisfied: PyYAML in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (6.0.1)
05:38:50Requirement already satisfied: numpy<2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.4)
05:38:50Requirement already satisfied: certifi>=2017.4.17 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (2024.2.2)
05:38:50Requirement already satisfied: charset-normalizer<4,>=2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.3.2)
05:38:50Requirement already satisfied: idna<4,>=2.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.6)
05:38:50WARNING: You are using pip version 21.2.3; however, version 24.2 is available.
05:38:50You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command.
05:38:50+ source docs/hudson/OMERO.sh
05:38:50++ set -e
05:38:50++ set -u
05:38:50++ set -x
05:38:50++ source docs/hudson/functions.sh
05:38:50++ echo Building merge_ci
05:38:50Building merge_ci
05:38:50++ python3 ./build.py build-dev release-all
05:38:50OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0
05:38:50Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
05:38:5105:38:51check-ivy:
05:38:51Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
05:38:51Created dir: /home/omero/workspace/OMERO-build/src/target
05:38:51:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
05:38:51:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
05:38:5205:38:52build-scons:
05:38:52Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
05:38:52No sub-builds to iterate on
05:38:52Entering /home/omero/workspace/OMERO-build/src/components/tools...
05:38:5205:38:52buildlist:
05:38:52:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
05:38:52:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
05:38:5205:38:52clean:
05:38:52Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
05:38:52Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
05:38:5305:38:53python-clean:
05:38:53WARNING: '' not a valid package name; please use only .-separated package names in setup.py
05:38:53/usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-513-f903836379-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
05:38:53 warnings.warn(
05:38:53running clean
05:38:53Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
05:38:53Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
05:38:5305:38:53python-clean:
05:38:53WARNING: '' not a valid package name; please use only .-separated package names in setup.py
05:38:53/usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-513-f903836379-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
05:38:53 warnings.warn(
05:38:53running clean
05:38:53Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
05:38:53Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
05:38:53Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
05:38:53Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
05:38:5305:38:53python-clean:
05:38:53WARNING: '' not a valid package name; please use only .-separated package names in setup.py
05:38:53/usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-513-f903836379-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
05:38:53 warnings.warn(
05:38:53running clean
05:38:53Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
05:38:53Deleting directory /home/omero/workspace/OMERO-build/src/target
05:38:5305:38:53build-scons:
05:38:53Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
05:38:5305:38:53build:
05:38:53No sub-builds to iterate on
05:38:53Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
05:38:53Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
05:38:53Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
05:38:53Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
05:38:5305:38:53tools-init:
05:38:53no-op
05:38:5405:38:54retrieve:
05:38:54:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
05:38:54:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
05:38:54WARNING: An illegal reflective access operation has occurred
05:38:54WARNING: Illegal reflective access by org.apache.ivy.util.url.IvyAuthenticator (file:/home/omero/workspace/OMERO-build/src/lib/repository/ivy-2.4.0.jar) to field java.net.Authenticator.theAuthenticator
05:38:54WARNING: Please consider reporting this to the maintainers of org.apache.ivy.util.url.IvyAuthenticator
05:38:54WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
05:38:54WARNING: All illegal access operations will be denied in a future release
05:39:2405:39:24prepare:
05:39:24Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
05:39:24Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
05:39:24Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
05:39:24Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
05:39:24Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
05:39:24Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
05:39:24Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
05:39:24Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
05:39:24Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
05:39:24Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
05:39:24Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
05:39:24Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
05:39:24Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
05:39:24Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
05:39:24Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
05:39:2405:39:24pre-compile:
05:39:24Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
05:39:24Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
05:39:24Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
05:39:24Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
05:39:24Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
05:39:2405:39:24compile:
05:39:24no-op
05:39:2405:39:24package:
05:39:24Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
05:39:2505:39:25install:
05:39:25:: delivering :: omero#omero_client;working@d88927cfc852 :: 5.6.3-513-f903836379-ice36 :: integration :: Thu Sep 26 05:38:53 UTC 2024
05:39:25 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
05:39:25:: publishing :: omero#omero_client
05:39:25 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-513-f903836379-ice36/omero_client-5.6.3-513-f903836379-ice36.jar
05:39:25 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-513-f903836379-ice36/omero_client-5.6.3-513-f903836379-ice36.xml
05:39:25Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
05:39:25Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
05:39:2505:39:25retrieve:
05:39:25:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
05:39:25:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
05:39:26Entering /home/omero/workspace/OMERO-build/src/components/tools...
05:39:2605:39:26dist:
05:39:26Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
05:39:26Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
05:39:26Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
05:39:26Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.8.4.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
05:39:26Copying 28 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
05:39:26Copying 28 files to /home/omero/workspace/OMERO-build/src/dist
05:39:26Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
05:39:26Entering /home/omero/workspace/OMERO-build/src/components/tests...
05:39:26Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
05:39:2605:39:26copy-licenses:
05:39:26Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
05:39:26Created dir: /home/omero/workspace/OMERO-build/src/dist/share
05:39:26Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
05:39:2605:39:26copy-history:
05:39:26Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
05:39:2605:39:26copy-etc:
05:39:26Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
05:39:26Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
05:39:2605:39:26copy-sql:
05:39:26Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
05:39:3205:39:32copy-server:
05:39:32 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.0.11 won
05:39:3205:39:32copy-client:
05:39:32Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
05:39:34 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.0.11 won
05:39:3405:39:34update-version:
05:39:34Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
05:39:3405:39:34create-workdirs:
05:39:34Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
05:39:34Created dir: /home/omero/workspace/OMERO-build/src/dist/var
05:39:3405:39:34copy-luts:
05:39:34Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
05:39:34Copying 39 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
05:39:3405:39:34test-compile:
05:39:34:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
05:39:34Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
05:39:34Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
05:39:34Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
05:39:34Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
05:39:34Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
05:39:34Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
05:39:34Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
05:39:3405:39:34testng-init:
05:39:34:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
05:39:34:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
05:39:3805:39:38,054 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
05:39:3805:39:38,057 |-INFO in ch.qos.logback.classic.util.ContextInitializer@42141c59 - No custom configurators were discovered as a service.
05:39:3805:39:38,057 |-INFO in ch.qos.logback.classic.util.ContextInitializer@42141c59 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
05:39:3805:39:38,061 |-INFO in ch.qos.logback.classic.util.ContextInitializer@42141c59 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
05:39:3805:39:38,062 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
05:39:3805:39:38,062 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
05:39:3805:39:38,064 |-INFO in ch.qos.logback.classic.util.ContextInitializer@42141c59 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 3 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
05:39:3805:39:38,064 |-INFO in ch.qos.logback.classic.util.ContextInitializer@42141c59 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
05:39:3805:39:38,067 |-INFO in ch.qos.logback.classic.util.ContextInitializer@42141c59 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
05:39:3805:39:38,067 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
05:39:3805:39:38,067 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
05:39:3805:39:38,069 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@49854d93 - Resource [logback.xml] occurs multiple times on the classpath.
05:39:3805:39:38,069 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@49854d93 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
05:39:3805:39:38,069 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@49854d93 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
05:39:3805:39:38,311 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
05:39:3805:39:38,311 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
05:39:3805:39:38,332 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
05:39:3805:39:38,334 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@29d7d117 - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
05:39:3805:39:38,334 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@29d7d117 - Please move "immediateFlush" property into the enclosing appender.
05:39:3805:39:38,405 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@29d7d117 - Setting the "immediateFlush" property of the enclosing appender to true
05:39:3805:39:38,406 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
05:39:3805:39:38,406 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
05:39:3805:39:38,406 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
05:39:3805:39:38,406 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
05:39:3805:39:38,406 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
05:39:3805:39:38,406 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
05:39:3805:39:38,408 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5213a8f7 - End of configuration.
05:39:3805:39:38,410 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@30078038 - Registering current configuration as safe fallback point
05:39:3805:39:38,410 |-INFO in ch.qos.logback.classic.util.ContextInitializer@42141c59 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 344 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
05:39:3805:39:38lifecycle.test-compile:
05:39:38Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
05:39:38Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
05:39:38warning: [options] bootstrap class path not set in conjunction with -source 8
05:39:40/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
05:39:40import omero.grid.RawAccessRequest;
05:39:40 ^
05:39:40/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
05:39:40import omero.grid.RawAccessRequest;
05:39:40 ^
05:39:40/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
05:39:40import omero.grid.RawAccessRequest;
05:39:40 ^
05:39:40/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
05:39:40import omero.model.ImportJob;
05:39:40 ^
05:39:40/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
05:39:40import omero.model.ImportJobI;
05:39:40 ^
05:39:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated
05:39:41 IObject link = (IObject) linkClass.newInstance();
05:39:41 ^
05:39:41 where T is a type-variable:
05:39:41 T extends Object declared in class Class
05:39:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
05:39:41 T copy = (T) obj.getClass().newInstance();
05:39:41 ^
05:39:41 where T is a type-variable:
05:39:41 T extends Object declared in class Class
05:39:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
05:39:41 RawAccessRequest raw = new RawAccessRequest();
05:39:41 ^
05:39:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
05:39:41 RawAccessRequest raw = new RawAccessRequest();
05:39:41 ^
05:39:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
05:39:41 raw.repoUuid = legacy.root().getHash().getValue();
05:39:41 ^
05:39:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
05:39:41 raw.command = "rm";
05:39:41 ^
05:39:41/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
05:39:41 raw.args = Arrays.asList(path);
05:39:41 ^
05:39:42/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
05:39:42 final IObject link = linkClass.newInstance();
05:39:42 ^
05:39:42 where T is a type-variable:
05:39:42 T extends Object declared in class Class
05:39:42/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
05:39:42 originalLink.setChild(annotationClass.newInstance());
05:39:42 ^
05:39:42 where T is a type-variable:
05:39:42 T extends Object declared in class Class
05:39:42/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
05:39:42 RoiResult r = svc.findByImage(id, new RoiOptions());
05:39:42 ^
05:39:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
05:39:43 final RawAccessRequest request = new RawAccessRequest();
05:39:43 ^
05:39:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
05:39:43 final RawAccessRequest request = new RawAccessRequest();
05:39:43 ^
05:39:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
05:39:43 request.repoUuid = repo.root().getHash().getValue();
05:39:43 ^
05:39:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
05:39:43 request.command = "exists";
05:39:43 ^
05:39:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
05:39:43 request.args = Collections.singletonList(dirPath);
05:39:43 ^
05:39:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
05:39:43 final RawAccessRequest request = new RawAccessRequest();
05:39:43 ^
05:39:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
05:39:43 final RawAccessRequest request = new RawAccessRequest();
05:39:43 ^
05:39:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
05:39:43 request.repoUuid = repo.root().getHash().getValue();
05:39:43 ^
05:39:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
05:39:43 request.command = "exists";
05:39:43 ^
05:39:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
05:39:43 request.args = Collections.singletonList(dirName);
05:39:43 ^
05:39:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
05:39:43 final ImportJob importJob = new ImportJobI();
05:39:43 ^
05:39:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
05:39:43 final ImportJob importJob = new ImportJobI();
05:39:43 ^
05:39:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
05:39:43 importJob.setImageName(omero.rtypes.rstring(name));
05:39:43 ^
05:39:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
05:39:43 importJob.setImageDescription(omero.rtypes.rstring(desc));
05:39:43 ^
05:39:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
05:39:43 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
05:39:43 ^
05:39:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
05:39:43 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
05:39:43 ^
05:39:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
05:39:43 final String savedName = sent.getImageName().getValue().toString();
05:39:43 ^
05:39:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
05:39:43 final String savedDesc = sent.getImageDescription().getValue().toString();
05:39:43 ^
05:39:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
05:39:43 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
05:39:43 ^
05:39:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
05:39:43 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
05:39:43 ^
05:39:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
05:39:43 final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
05:39:43 ^
05:39:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
05:39:43 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
05:39:43 ^
05:39:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
05:39:43 RoiResult r = svc.findByImage(image.getId().getValue(),
05:39:43 ^
05:39:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
05:39:43 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
05:39:43 ^
05:39:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
05:39:43 l = svc.getRoiMeasurements(image.getId().getValue(), options);
05:39:43 ^
05:39:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
05:39:43 l = svc.getRoiMeasurements(image.getId().getValue(), options);
05:39:43 ^
05:39:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
05:39:43 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
05:39:43 ^
05:39:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
05:39:43 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
05:39:43 ^
05:39:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
05:39:43 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
05:39:43 ^
05:39:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
05:39:43 table = svc.getTable(f.getId().getValue());
05:39:43 ^
05:39:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
05:39:43 RoiResult r = svc.findByImage(image.getId().getValue(),
05:39:43 ^
05:39:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
05:39:43 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
05:39:43 ^
05:39:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
05:39:43 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
05:39:43 ^
05:39:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
05:39:43 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
05:39:43 ^
05:39:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
05:39:43 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
05:39:43 ^
05:39:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
05:39:43 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
05:39:43 ^
05:39:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
05:39:43 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
05:39:43 ^
05:39:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
05:39:43 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
05:39:43 ^
05:39:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
05:39:43 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
05:39:43 ^
05:39:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Long(long) in Long has been deprecated
05:39:43 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
05:39:43 ^
05:39:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
05:39:43 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
05:39:43 ^
05:39:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
05:39:43 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
05:39:43 ^
05:39:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
05:39:43 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
05:39:43 ^
05:39:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
05:39:43 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
05:39:43 ^
05:39:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
05:39:43 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
05:39:43 ^
05:39:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
05:39:43 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
05:39:43 ^
05:39:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
05:39:43 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
05:39:43 ^
05:39:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
05:39:43 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
05:39:43 ^
05:39:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
05:39:43 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
05:39:43 ^
05:39:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
05:39:43 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
05:39:43 ^
05:39:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
05:39:43 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
05:39:43 ^
05:39:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
05:39:43 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
05:39:43 ^
05:39:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
05:39:43 svc.getShapeStatsRestricted(
05:39:43 ^
05:39:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
05:39:43 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
05:39:43 ^
05:39:44/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
05:39:44 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
05:39:44 ^
05:39:44/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
05:39:44 request.typesToIgnore = Collections.singletonList("TagAnnotation");
05:39:44 ^
05:39:44/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
05:39:44 request.typesToIgnore = Collections.singletonList("IAnnotationLink");
05:39:44 ^
05:39:44/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
05:39:44 request.typesToIgnore = Collections.singletonList("Annotation");
05:39:44 ^
05:39:44/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
05:39:44 request.typesToIgnore = Collections.singletonList("Annotation");
05:39:44 ^
05:39:44/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
05:39:44 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
05:39:44 ^
05:39:44/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
05:39:44 p2.setRelatedTo(p1);
05:39:44 ^
05:39:44/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
05:39:44 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
05:39:44 ^
05:39:44/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
05:39:44 pixels1.setRelatedTo(pixels2);
05:39:44 ^
05:39:44/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
05:39:44 Pixels pixels = pixels1.getRelatedTo();
05:39:44 ^
05:39:44/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
05:39:44 Assert.assertNull(pixels1.getRelatedTo());
05:39:44 ^
05:39:44/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
05:39:44 pixels1.setRelatedTo(pixels2);
05:39:44 ^
05:39:44/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
05:39:44 Pixels pixels = pixels1.getRelatedTo();
05:39:44 ^
05:39:44/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
05:39:44 Assert.assertNull(pixels1.getRelatedTo());
05:39:44 ^
05:39:44/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
05:39:44 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
05:39:44 ^
05:39:44/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
05:39:44 l = svc.getRoiMeasurements(image.getId().getValue(), options);
05:39:44 ^
05:39:44/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
05:39:44 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
05:39:44 ^
05:39:44/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
05:39:44 l = svc.getRoiMeasurements(image.getId().getValue(), options);
05:39:44 ^
05:39:44Note: Some input files use unchecked or unsafe operations.
05:39:44Note: Recompile with -Xlint:unchecked for details.
05:39:4488 warnings
05:39:44Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_2109670153.tmp
05:39:44Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar
05:39:44:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
05:39:44:: delivering :: omero#OmeroJava-test;working@d88927cfc852 :: 5.6.3-513-f903836379-ice36 :: integration :: Thu Sep 26 05:39:34 UTC 2024
05:39:44 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml
05:39:44:: publishing :: omero#OmeroJava-test
05:39:44 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-513-f903836379-ice36.jar
05:39:44 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-513-f903836379-ice36.xml
05:39:4405:39:44build-eclipse:
05:39:44No sub-builds to iterate on
05:39:44Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
05:39:4505:39:45retrieve:
05:39:45:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
05:39:45:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
05:39:4705:39:47prepare:
05:39:47Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
05:39:4905:39:49release-clients:
05:39:49Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-513-f903836379-ice36.zip
05:39:5505:39:55release-zip:
05:39:55Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-513-f903836379-ice36.zip
05:40:0805:40:08BUILD SUCCESSFUL
05:40:08Total time: 1 minute 17 seconds
05:40:08++ '[' -d .git ']'
05:40:08++ python3 ./build.py release-src
05:40:08OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0
05:40:08Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
05:40:0905:40:09release-src-git:
05:40:09Releasing openmicroscopy-5.6.3-513-f903836379-ice36
05:40:10 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-513-f903836379-ice36.zip
05:40:10 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-513-f903836379-ice36-base.zip
05:40:1205:40:12BUILD SUCCESSFUL
05:40:12Total time: 3 seconds
05:40:12++ echo BUILD_NUMBER=187
05:40:12++ echo OMERO_BRANCH=merge_ci
05:40:12++ git_info
05:40:12+++ git rev-parse HEAD
05:40:12++ HEAD=f903836379e30ec41d5a27a8576ac6abd4547ac9
05:40:12++ git log --max-count=1 f903836379e30ec41d5a27a8576ac6abd4547ac9
05:40:12++ env
05:40:12++ sort
05:40:12Archiving artifacts
05:40:39Finished: SUCCESS
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