11:27:21Started by upstream project "Trigger" build number 22611:27:21originally caused by:
11:27:21 Started by user devspace11:27:21Running as SYSTEM
11:27:21Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
11:27:21The recommended git tool is: NONE
11:27:21No credentials specified
11:27:21 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10
11:27:21Fetching changes from the remote Git repository
11:27:21 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
11:27:21Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git11:27:21 > git --version # timeout=10
11:27:21 > git --version # 'git version 2.43.5'
11:27:21 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
11:27:26 > git rev-parse origin/merge_ci^{commit} # timeout=10
11:27:26Checking out Revision 4bf99efd43280ad14d02c09b411d6e8a4ea05b82 (origin/merge_ci)
11:27:26 > git config core.sparsecheckout # timeout=10
11:27:26 > git checkout -f 4bf99efd43280ad14d02c09b411d6e8a4ea05b82 # timeout=10
11:27:26Commit message: "Add version.properties to etc/omero.properties"
11:27:26 > git rev-list --no-walk f903836379e30ec41d5a27a8576ac6abd4547ac9 # timeout=10
11:27:26Cleaning workspace
11:27:26 > git rev-parse --verify HEAD # timeout=10
11:27:26Resetting working tree
11:27:26 > git reset --hard # timeout=10
11:27:27 > git clean -fdx # timeout=10
11:27:27Copied 6 artifacts from "OMERO-python-superbuild-build" build number 18511:27:27[OMERO-build] $ /bin/bash -xe /tmp/jenkins17682002933485051834.sh
11:27:27+ mv omero-scripts/dist/omero_scripts-5.8.4.dev0.tar.gz .
11:27:27+ cd src
11:27:27+ export OMERO_BRANCH=merge_ci
11:27:27+ OMERO_BRANCH=merge_ci
11:27:27+ OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
11:27:27+ source /home/omero/settings.env
11:27:27++ OMERO_DB_HOST=pg
11:27:27++ OMERO_DB_USER=postgres
11:27:27++ OMERO_DB_PASS=
11:27:27++ OMERO_ROOT_PASS=omero
11:27:27++ OMERO_DATA_DIR=/OMERO
11:27:27++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
11:27:27+ python3 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
11:27:30+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl11:27:31Collecting zeroc-ice==3.6.5
11:27:32 Downloading https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl (31.3 MB)
11:27:34WARNING: You are using pip version 21.2.3; however, version 24.2 is available.
11:27:34You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command.
11:27:34+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U setuptools omero-py
11:27:34Requirement already satisfied: setuptools in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (75.1.0)
11:27:35Requirement already satisfied: omero-py in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (5.19.5)
11:27:35Requirement already satisfied: Pillow>=10.0.0 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (10.2.0)
11:27:35Requirement already satisfied: future in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.0.0)
11:27:35Requirement already satisfied: urllib3<2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.18)
11:27:35Requirement already satisfied: numpy<2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.4)
11:27:35Requirement already satisfied: appdirs in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.4.4)
11:27:35Requirement already satisfied: portalocker in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.8.2)
11:27:35Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (3.6.5)
11:27:35Requirement already satisfied: requests in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.31.0)
11:27:35Requirement already satisfied: PyYAML in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (6.0.1)
11:27:35Requirement already satisfied: idna<4,>=2.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.6)
11:27:35Requirement already satisfied: charset-normalizer<4,>=2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.3.2)
11:27:35Requirement already satisfied: certifi>=2017.4.17 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (2024.2.2)
11:27:35WARNING: You are using pip version 21.2.3; however, version 24.2 is available.
11:27:35You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command.
11:27:35+ source docs/hudson/OMERO.sh
11:27:35++ set -e
11:27:35++ set -u
11:27:35++ set -x
11:27:35++ source docs/hudson/functions.sh
11:27:35++ echo Building merge_ci
11:27:35Building merge_ci
11:27:35++ python3 ./build.py build-dev release-all
11:27:35OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0
11:27:35Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
11:27:3611:27:36check-ivy:
11:27:36Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
11:27:36Created dir: /home/omero/workspace/OMERO-build/src/target
11:27:36:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
11:27:36:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
11:27:3711:27:37build-scons:
11:27:37Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
11:27:37No sub-builds to iterate on
11:27:37Entering /home/omero/workspace/OMERO-build/src/components/tools...
11:27:3711:27:37buildlist:
11:27:37:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
11:27:37:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
11:27:3811:27:38clean:
11:27:38Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
11:27:38Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
11:27:3811:27:38python-clean:
11:27:38WARNING: '' not a valid package name; please use only .-separated package names in setup.py
11:27:38/usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-513-4bf99efd43-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
11:27:38 warnings.warn(
11:27:38running clean
11:27:38Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
11:27:38Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
11:27:3811:27:38python-clean:
11:27:38WARNING: '' not a valid package name; please use only .-separated package names in setup.py
11:27:38/usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-513-4bf99efd43-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
11:27:38 warnings.warn(
11:27:38running clean
11:27:38Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
11:27:38Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
11:27:38Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
11:27:38Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
11:27:3911:27:39python-clean:
11:27:39WARNING: '' not a valid package name; please use only .-separated package names in setup.py
11:27:39/usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-513-4bf99efd43-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
11:27:39 warnings.warn(
11:27:39running clean
11:27:39Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
11:27:39Deleting directory /home/omero/workspace/OMERO-build/src/target
11:27:3911:27:39build-scons:
11:27:39Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
11:27:3911:27:39build:
11:27:39No sub-builds to iterate on
11:27:39Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
11:27:39Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
11:27:39Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
11:27:39Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
11:27:3911:27:39tools-init:
11:27:39no-op
11:27:3911:27:39retrieve:
11:27:39:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
11:27:39:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
11:27:40WARNING: An illegal reflective access operation has occurred
11:27:40WARNING: Illegal reflective access by org.apache.ivy.util.url.IvyAuthenticator (file:/home/omero/workspace/OMERO-build/src/lib/repository/ivy-2.4.0.jar) to field java.net.Authenticator.theAuthenticator
11:27:40WARNING: Please consider reporting this to the maintainers of org.apache.ivy.util.url.IvyAuthenticator
11:27:40WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
11:27:40WARNING: All illegal access operations will be denied in a future release
11:28:0611:28:06prepare:
11:28:06Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
11:28:06Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
11:28:06Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
11:28:06Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
11:28:06Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
11:28:06Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
11:28:06Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
11:28:06Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
11:28:06Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
11:28:06Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
11:28:06Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
11:28:06Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
11:28:06Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
11:28:06Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
11:28:06Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
11:28:0611:28:06pre-compile:
11:28:06Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
11:28:06Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
11:28:06Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
11:28:06Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
11:28:06Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
11:28:0611:28:06compile:
11:28:06no-op
11:28:0611:28:06package:
11:28:06Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
11:28:0711:28:07install:
11:28:07:: delivering :: omero#omero_client;working@038f72291f19 :: 5.6.3-513-4bf99efd43-ice36 :: integration :: Thu Sep 26 11:27:39 UTC 2024
11:28:07 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
11:28:07:: publishing :: omero#omero_client
11:28:07 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-513-4bf99efd43-ice36/omero_client-5.6.3-513-4bf99efd43-ice36.jar
11:28:07 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-513-4bf99efd43-ice36/omero_client-5.6.3-513-4bf99efd43-ice36.xml
11:28:07Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
11:28:07Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
11:28:0711:28:07retrieve:
11:28:07:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
11:28:07:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
11:28:08Entering /home/omero/workspace/OMERO-build/src/components/tools...
11:28:0811:28:08dist:
11:28:08Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
11:28:08Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
11:28:08Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
11:28:08Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.8.4.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
11:28:08Copying 28 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
11:28:08Copying 28 files to /home/omero/workspace/OMERO-build/src/dist
11:28:08Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
11:28:08Entering /home/omero/workspace/OMERO-build/src/components/tests...
11:28:08Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
11:28:0811:28:08copy-licenses:
11:28:08Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
11:28:08Created dir: /home/omero/workspace/OMERO-build/src/dist/share
11:28:08Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
11:28:0811:28:08copy-history:
11:28:08Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
11:28:0811:28:08copy-etc:
11:28:08Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
11:28:08Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
11:28:0811:28:08copy-sql:
11:28:08Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
11:28:1411:28:14copy-server:
11:28:14 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.0.11 won
11:28:1511:28:15copy-client:
11:28:15Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
11:28:16 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.0.11 won
11:28:1611:28:16update-version:
11:28:16Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
11:28:1611:28:16create-workdirs:
11:28:16Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
11:28:16Created dir: /home/omero/workspace/OMERO-build/src/dist/var
11:28:1611:28:16copy-luts:
11:28:16Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
11:28:16Copying 39 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
11:28:1611:28:16test-compile:
11:28:16:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
11:28:16Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
11:28:16Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
11:28:16Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
11:28:16Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
11:28:16Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
11:28:16Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
11:28:16Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
11:28:1711:28:17testng-init:
11:28:17:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
11:28:17:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
11:28:2111:28:20,749 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
11:28:2111:28:20,753 |-INFO in ch.qos.logback.classic.util.ContextInitializer@354aaf03 - No custom configurators were discovered as a service.
11:28:2111:28:20,753 |-INFO in ch.qos.logback.classic.util.ContextInitializer@354aaf03 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
11:28:2111:28:20,756 |-INFO in ch.qos.logback.classic.util.ContextInitializer@354aaf03 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
11:28:2111:28:20,757 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
11:28:2111:28:20,757 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
11:28:2111:28:20,758 |-INFO in ch.qos.logback.classic.util.ContextInitializer@354aaf03 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
11:28:2111:28:20,758 |-INFO in ch.qos.logback.classic.util.ContextInitializer@354aaf03 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
11:28:2111:28:20,760 |-INFO in ch.qos.logback.classic.util.ContextInitializer@354aaf03 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
11:28:2111:28:20,761 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
11:28:2111:28:20,761 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
11:28:2111:28:20,762 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@63e31b89 - Resource [logback.xml] occurs multiple times on the classpath.
11:28:2111:28:20,762 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@63e31b89 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
11:28:2111:28:20,762 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@63e31b89 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
11:28:2111:28:20,995 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
11:28:2111:28:20,995 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
11:28:2111:28:21,016 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
11:28:2111:28:21,018 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@42141c59 - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
11:28:2111:28:21,018 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@42141c59 - Please move "immediateFlush" property into the enclosing appender.
11:28:2111:28:21,085 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@42141c59 - Setting the "immediateFlush" property of the enclosing appender to true
11:28:2111:28:21,086 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
11:28:2111:28:21,086 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
11:28:2111:28:21,087 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
11:28:2111:28:21,087 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
11:28:2111:28:21,087 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
11:28:2111:28:21,087 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
11:28:2111:28:21,088 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@49854d93 - End of configuration.
11:28:2111:28:21,090 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@29d7d117 - Registering current configuration as safe fallback point
11:28:2111:28:21,090 |-INFO in ch.qos.logback.classic.util.ContextInitializer@354aaf03 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 330 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
11:28:2111:28:21lifecycle.test-compile:
11:28:21Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
11:28:21Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
11:28:21warning: [options] bootstrap class path not set in conjunction with -source 8
11:28:22/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
11:28:22import omero.grid.RawAccessRequest;
11:28:22 ^
11:28:23/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
11:28:23import omero.grid.RawAccessRequest;
11:28:23 ^
11:28:23/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
11:28:23import omero.grid.RawAccessRequest;
11:28:23 ^
11:28:23/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
11:28:23import omero.model.ImportJob;
11:28:23 ^
11:28:23/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
11:28:23import omero.model.ImportJobI;
11:28:23 ^
11:28:23/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated
11:28:23 IObject link = (IObject) linkClass.newInstance();
11:28:23 ^
11:28:23 where T is a type-variable:
11:28:23 T extends Object declared in class Class
11:28:24/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
11:28:24 T copy = (T) obj.getClass().newInstance();
11:28:24 ^
11:28:24 where T is a type-variable:
11:28:24 T extends Object declared in class Class
11:28:24/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
11:28:24 RawAccessRequest raw = new RawAccessRequest();
11:28:24 ^
11:28:24/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
11:28:24 RawAccessRequest raw = new RawAccessRequest();
11:28:24 ^
11:28:24/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
11:28:24 raw.repoUuid = legacy.root().getHash().getValue();
11:28:24 ^
11:28:24/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
11:28:24 raw.command = "rm";
11:28:24 ^
11:28:24/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
11:28:24 raw.args = Arrays.asList(path);
11:28:24 ^
11:28:24/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
11:28:24 final IObject link = linkClass.newInstance();
11:28:24 ^
11:28:24 where T is a type-variable:
11:28:24 T extends Object declared in class Class
11:28:24/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
11:28:24 originalLink.setChild(annotationClass.newInstance());
11:28:24 ^
11:28:24 where T is a type-variable:
11:28:24 T extends Object declared in class Class
11:28:25/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
11:28:25 RoiResult r = svc.findByImage(id, new RoiOptions());
11:28:25 ^
11:28:25/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
11:28:25 final RawAccessRequest request = new RawAccessRequest();
11:28:25 ^
11:28:25/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
11:28:25 final RawAccessRequest request = new RawAccessRequest();
11:28:25 ^
11:28:25/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
11:28:25 request.repoUuid = repo.root().getHash().getValue();
11:28:25 ^
11:28:25/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
11:28:25 request.command = "exists";
11:28:25 ^
11:28:25/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
11:28:25 request.args = Collections.singletonList(dirPath);
11:28:25 ^
11:28:25/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
11:28:25 final RawAccessRequest request = new RawAccessRequest();
11:28:25 ^
11:28:25/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
11:28:25 final RawAccessRequest request = new RawAccessRequest();
11:28:25 ^
11:28:25/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
11:28:25 request.repoUuid = repo.root().getHash().getValue();
11:28:25 ^
11:28:25/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
11:28:25 request.command = "exists";
11:28:25 ^
11:28:25/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
11:28:25 request.args = Collections.singletonList(dirName);
11:28:25 ^
11:28:25/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
11:28:25 final ImportJob importJob = new ImportJobI();
11:28:25 ^
11:28:25/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
11:28:25 final ImportJob importJob = new ImportJobI();
11:28:25 ^
11:28:25/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
11:28:25 importJob.setImageName(omero.rtypes.rstring(name));
11:28:25 ^
11:28:25/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
11:28:25 importJob.setImageDescription(omero.rtypes.rstring(desc));
11:28:25 ^
11:28:25/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
11:28:25 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
11:28:25 ^
11:28:25/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
11:28:25 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
11:28:25 ^
11:28:25/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
11:28:25 final String savedName = sent.getImageName().getValue().toString();
11:28:25 ^
11:28:25/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
11:28:25 final String savedDesc = sent.getImageDescription().getValue().toString();
11:28:25 ^
11:28:25/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
11:28:25 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
11:28:25 ^
11:28:25/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
11:28:25 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
11:28:25 ^
11:28:25/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
11:28:25 final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
11:28:25 ^
11:28:25/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
11:28:25 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
11:28:25 ^
11:28:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
11:28:26 RoiResult r = svc.findByImage(image.getId().getValue(),
11:28:26 ^
11:28:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
11:28:26 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
11:28:26 ^
11:28:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
11:28:26 l = svc.getRoiMeasurements(image.getId().getValue(), options);
11:28:26 ^
11:28:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
11:28:26 l = svc.getRoiMeasurements(image.getId().getValue(), options);
11:28:26 ^
11:28:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
11:28:26 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
11:28:26 ^
11:28:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
11:28:26 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
11:28:26 ^
11:28:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
11:28:26 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
11:28:26 ^
11:28:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
11:28:26 table = svc.getTable(f.getId().getValue());
11:28:26 ^
11:28:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
11:28:26 RoiResult r = svc.findByImage(image.getId().getValue(),
11:28:26 ^
11:28:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
11:28:26 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
11:28:26 ^
11:28:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
11:28:26 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
11:28:26 ^
11:28:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
11:28:26 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
11:28:26 ^
11:28:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
11:28:26 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
11:28:26 ^
11:28:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
11:28:26 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
11:28:26 ^
11:28:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
11:28:26 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
11:28:26 ^
11:28:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
11:28:26 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
11:28:26 ^
11:28:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
11:28:26 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
11:28:26 ^
11:28:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Long(long) in Long has been deprecated
11:28:26 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
11:28:26 ^
11:28:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
11:28:26 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
11:28:26 ^
11:28:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
11:28:26 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
11:28:26 ^
11:28:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
11:28:26 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
11:28:26 ^
11:28:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
11:28:26 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
11:28:26 ^
11:28:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
11:28:26 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
11:28:26 ^
11:28:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
11:28:26 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
11:28:26 ^
11:28:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
11:28:26 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
11:28:26 ^
11:28:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
11:28:26 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
11:28:26 ^
11:28:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
11:28:26 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
11:28:26 ^
11:28:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
11:28:26 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
11:28:26 ^
11:28:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
11:28:26 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
11:28:26 ^
11:28:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
11:28:26 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
11:28:26 ^
11:28:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
11:28:26 svc.getShapeStatsRestricted(
11:28:26 ^
11:28:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
11:28:26 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
11:28:26 ^
11:28:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
11:28:26 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
11:28:26 ^
11:28:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
11:28:26 request.typesToIgnore = Collections.singletonList("TagAnnotation");
11:28:26 ^
11:28:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
11:28:26 request.typesToIgnore = Collections.singletonList("IAnnotationLink");
11:28:26 ^
11:28:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
11:28:26 request.typesToIgnore = Collections.singletonList("Annotation");
11:28:26 ^
11:28:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
11:28:26 request.typesToIgnore = Collections.singletonList("Annotation");
11:28:26 ^
11:28:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
11:28:26 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
11:28:26 ^
11:28:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
11:28:26 p2.setRelatedTo(p1);
11:28:26 ^
11:28:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
11:28:26 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
11:28:26 ^
11:28:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
11:28:26 pixels1.setRelatedTo(pixels2);
11:28:26 ^
11:28:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
11:28:26 Pixels pixels = pixels1.getRelatedTo();
11:28:26 ^
11:28:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
11:28:26 Assert.assertNull(pixels1.getRelatedTo());
11:28:26 ^
11:28:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
11:28:26 pixels1.setRelatedTo(pixels2);
11:28:26 ^
11:28:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
11:28:26 Pixels pixels = pixels1.getRelatedTo();
11:28:26 ^
11:28:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
11:28:26 Assert.assertNull(pixels1.getRelatedTo());
11:28:26 ^
11:28:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
11:28:26 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
11:28:26 ^
11:28:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
11:28:26 l = svc.getRoiMeasurements(image.getId().getValue(), options);
11:28:26 ^
11:28:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
11:28:26 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
11:28:26 ^
11:28:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
11:28:26 l = svc.getRoiMeasurements(image.getId().getValue(), options);
11:28:26 ^
11:28:26Note: Some input files use unchecked or unsafe operations.
11:28:26Note: Recompile with -Xlint:unchecked for details.
11:28:2688 warnings
11:28:26Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_2144372866.tmp
11:28:26Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar
11:28:27:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
11:28:27:: delivering :: omero#OmeroJava-test;working@038f72291f19 :: 5.6.3-513-4bf99efd43-ice36 :: integration :: Thu Sep 26 11:28:16 UTC 2024
11:28:27 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml
11:28:27:: publishing :: omero#OmeroJava-test
11:28:27 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-513-4bf99efd43-ice36.jar
11:28:27 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-513-4bf99efd43-ice36.xml
11:28:2711:28:27build-eclipse:
11:28:27No sub-builds to iterate on
11:28:27Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
11:28:2711:28:27retrieve:
11:28:27:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
11:28:27:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
11:28:2911:28:29prepare:
11:28:29Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
11:28:3311:28:33release-clients:
11:28:33Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-513-4bf99efd43-ice36.zip
11:28:3911:28:39release-zip:
11:28:39Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-513-4bf99efd43-ice36.zip
11:28:5211:28:52BUILD SUCCESSFUL
11:28:52Total time: 1 minute 16 seconds
11:28:52++ '[' -d .git ']'
11:28:52++ python3 ./build.py release-src
11:28:52OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0
11:28:52Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
11:28:5211:28:52release-src-git:
11:28:52Releasing openmicroscopy-5.6.3-513-4bf99efd43-ice36
11:28:54 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-513-4bf99efd43-ice36.zip
11:28:54 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-513-4bf99efd43-ice36-base.zip
11:28:5611:28:56BUILD SUCCESSFUL
11:28:56Total time: 3 seconds
11:28:56++ echo BUILD_NUMBER=188
11:28:56++ echo OMERO_BRANCH=merge_ci
11:28:56++ git_info
11:28:56+++ git rev-parse HEAD
11:28:56++ HEAD=4bf99efd43280ad14d02c09b411d6e8a4ea05b82
11:28:56++ git log --max-count=1 4bf99efd43280ad14d02c09b411d6e8a4ea05b82
11:28:56++ env
11:28:56++ sort
11:28:56Archiving artifacts
11:29:26Finished: SUCCESS
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