04:39:25Started by upstream project "Trigger" build number 22804:39:25originally caused by:
04:39:25 Started by user devspace04:39:25Running as SYSTEM
04:39:25Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
04:39:25The recommended git tool is: NONE
04:39:25No credentials specified
04:39:25 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10
04:39:25Fetching changes from the remote Git repository
04:39:25 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
04:39:25Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git04:39:25 > git --version # timeout=10
04:39:25 > git --version # 'git version 2.43.5'
04:39:25 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
04:39:26 > git rev-parse origin/merge_ci^{commit} # timeout=10
04:39:26Checking out Revision f39b7a8d4fc8834e570bb5995f8fbc3e9c557bc0 (origin/merge_ci)
04:39:26 > git config core.sparsecheckout # timeout=10
04:39:26 > git checkout -f f39b7a8d4fc8834e570bb5995f8fbc3e9c557bc0 # timeout=10
04:39:26Commit message: "Add version.properties to etc/omero.properties"
04:39:26 > git rev-list --no-walk 4bf99efd43280ad14d02c09b411d6e8a4ea05b82 # timeout=10
04:39:27Cleaning workspace
04:39:27 > git rev-parse --verify HEAD # timeout=10
04:39:27Resetting working tree
04:39:27 > git reset --hard # timeout=10
04:39:27 > git clean -fdx # timeout=10
04:39:27Copied 6 artifacts from "OMERO-python-superbuild-build" build number 18604:39:27[OMERO-build] $ /bin/bash -xe /tmp/jenkins17899521928290970813.sh
04:39:27+ mv omero-scripts/dist/omero_scripts-5.8.4.dev0.tar.gz .
04:39:27+ cd src
04:39:27+ export OMERO_BRANCH=merge_ci
04:39:27+ OMERO_BRANCH=merge_ci
04:39:27+ OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
04:39:27+ source /home/omero/settings.env
04:39:27++ OMERO_DB_HOST=pg
04:39:27++ OMERO_DB_USER=postgres
04:39:27++ OMERO_DB_PASS=
04:39:27++ OMERO_ROOT_PASS=omero
04:39:27++ OMERO_DATA_DIR=/OMERO
04:39:27++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
04:39:27+ python3 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
04:39:30+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl04:39:32Collecting zeroc-ice==3.6.5
04:39:33 Downloading https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl (31.3 MB)
04:39:35WARNING: You are using pip version 21.2.3; however, version 24.2 is available.
04:39:35You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command.
04:39:35+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U setuptools omero-py
04:39:35Requirement already satisfied: setuptools in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (75.1.0)
04:39:36Requirement already satisfied: omero-py in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (5.19.5)
04:39:36Requirement already satisfied: urllib3<2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.18)
04:39:36Requirement already satisfied: numpy<2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.4)
04:39:36Requirement already satisfied: PyYAML in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (6.0.1)
04:39:36Requirement already satisfied: future in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.0.0)
04:39:36Requirement already satisfied: Pillow>=10.0.0 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (10.2.0)
04:39:36Requirement already satisfied: appdirs in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.4.4)
04:39:36Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (3.6.5)
04:39:36Requirement already satisfied: portalocker in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.8.2)
04:39:36Requirement already satisfied: requests in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.31.0)
04:39:36Requirement already satisfied: charset-normalizer<4,>=2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.3.2)
04:39:36Requirement already satisfied: certifi>=2017.4.17 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (2024.2.2)
04:39:36Requirement already satisfied: idna<4,>=2.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.6)
04:39:36WARNING: You are using pip version 21.2.3; however, version 24.2 is available.
04:39:36You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command.
04:39:36+ source docs/hudson/OMERO.sh
04:39:36++ set -e
04:39:36++ set -u
04:39:36++ set -x
04:39:36++ source docs/hudson/functions.sh
04:39:36++ echo Building merge_ci
04:39:36Building merge_ci
04:39:36++ python3 ./build.py build-dev release-all
04:39:36OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0
04:39:37Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
04:39:3804:39:38check-ivy:
04:39:38Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
04:39:38Created dir: /home/omero/workspace/OMERO-build/src/target
04:39:38:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
04:39:38:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
04:39:3904:39:39build-scons:
04:39:39Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
04:39:40No sub-builds to iterate on
04:39:40Entering /home/omero/workspace/OMERO-build/src/components/tools...
04:39:4004:39:40buildlist:
04:39:40:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
04:39:40:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
04:39:4004:39:40clean:
04:39:40Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
04:39:41Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
04:39:4104:39:41python-clean:
04:39:41WARNING: '' not a valid package name; please use only .-separated package names in setup.py
04:39:41/usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-513-f39b7a8d4f-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
04:39:41 warnings.warn(
04:39:41running clean
04:39:41Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
04:39:41Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
04:39:4104:39:41python-clean:
04:39:41WARNING: '' not a valid package name; please use only .-separated package names in setup.py
04:39:41/usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-513-f39b7a8d4f-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
04:39:41 warnings.warn(
04:39:41running clean
04:39:41Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
04:39:41Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
04:39:41Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
04:39:41Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
04:39:4104:39:41python-clean:
04:39:41WARNING: '' not a valid package name; please use only .-separated package names in setup.py
04:39:41/usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-513-f39b7a8d4f-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
04:39:41 warnings.warn(
04:39:41running clean
04:39:41Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
04:39:41Deleting directory /home/omero/workspace/OMERO-build/src/target
04:39:4104:39:41build-scons:
04:39:41Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
04:39:4204:39:42build:
04:39:42No sub-builds to iterate on
04:39:42Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
04:39:42Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
04:39:42Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
04:39:42Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
04:39:4204:39:42tools-init:
04:39:42no-op
04:39:4204:39:42retrieve:
04:39:42:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
04:39:42:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
04:39:43WARNING: An illegal reflective access operation has occurred
04:39:43WARNING: Illegal reflective access by org.apache.ivy.util.url.IvyAuthenticator (file:/home/omero/workspace/OMERO-build/src/lib/repository/ivy-2.4.0.jar) to field java.net.Authenticator.theAuthenticator
04:39:43WARNING: Please consider reporting this to the maintainers of org.apache.ivy.util.url.IvyAuthenticator
04:39:43WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
04:39:43WARNING: All illegal access operations will be denied in a future release
04:40:1204:40:12prepare:
04:40:12Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
04:40:12Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
04:40:12Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
04:40:12Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
04:40:12Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
04:40:12Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
04:40:12Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
04:40:12Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
04:40:12Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
04:40:12Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
04:40:12Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
04:40:12Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
04:40:12Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
04:40:12Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
04:40:12Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
04:40:1204:40:12pre-compile:
04:40:12Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
04:40:12Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
04:40:12Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
04:40:12Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
04:40:12Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
04:40:1204:40:12compile:
04:40:12no-op
04:40:1204:40:12package:
04:40:12Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
04:40:1304:40:13install:
04:40:13:: delivering :: omero#omero_client;working@038f72291f19 :: 5.6.3-513-f39b7a8d4f-ice36 :: integration :: Fri Sep 27 04:39:42 UTC 2024
04:40:13 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
04:40:13:: publishing :: omero#omero_client
04:40:13 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-513-f39b7a8d4f-ice36/omero_client-5.6.3-513-f39b7a8d4f-ice36.jar
04:40:13 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-513-f39b7a8d4f-ice36/omero_client-5.6.3-513-f39b7a8d4f-ice36.xml
04:40:13Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
04:40:13Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
04:40:1304:40:13retrieve:
04:40:13:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
04:40:13:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
04:40:13Entering /home/omero/workspace/OMERO-build/src/components/tools...
04:40:1304:40:13dist:
04:40:13Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
04:40:13Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
04:40:13Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
04:40:13Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.8.4.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
04:40:13Copying 28 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
04:40:13Copying 28 files to /home/omero/workspace/OMERO-build/src/dist
04:40:13Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
04:40:14Entering /home/omero/workspace/OMERO-build/src/components/tests...
04:40:14Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
04:40:1404:40:14copy-licenses:
04:40:14Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
04:40:14Created dir: /home/omero/workspace/OMERO-build/src/dist/share
04:40:14Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
04:40:1404:40:14copy-history:
04:40:14Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
04:40:1404:40:14copy-etc:
04:40:14Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
04:40:14Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
04:40:1404:40:14copy-sql:
04:40:14Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
04:40:2404:40:24copy-server:
04:40:24 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.0.11 won
04:40:2504:40:25copy-client:
04:40:25Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
04:40:26 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.0.11 won
04:40:2604:40:26update-version:
04:40:26Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
04:40:2604:40:26create-workdirs:
04:40:26Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
04:40:26Created dir: /home/omero/workspace/OMERO-build/src/dist/var
04:40:2604:40:26copy-luts:
04:40:26Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
04:40:26Copying 39 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
04:40:2604:40:26test-compile:
04:40:26:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
04:40:26Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
04:40:26Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
04:40:26Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
04:40:26Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
04:40:26Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
04:40:26Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
04:40:26Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
04:40:2704:40:27testng-init:
04:40:27:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
04:40:27:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
04:40:3104:40:31,209 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
04:40:3104:40:31,212 |-INFO in ch.qos.logback.classic.util.ContextInitializer@42141c59 - No custom configurators were discovered as a service.
04:40:3104:40:31,212 |-INFO in ch.qos.logback.classic.util.ContextInitializer@42141c59 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
04:40:3104:40:31,216 |-INFO in ch.qos.logback.classic.util.ContextInitializer@42141c59 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
04:40:3104:40:31,216 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
04:40:3104:40:31,217 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
04:40:3104:40:31,218 |-INFO in ch.qos.logback.classic.util.ContextInitializer@42141c59 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
04:40:3104:40:31,218 |-INFO in ch.qos.logback.classic.util.ContextInitializer@42141c59 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
04:40:3104:40:31,219 |-INFO in ch.qos.logback.classic.util.ContextInitializer@42141c59 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
04:40:3104:40:31,220 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
04:40:3104:40:31,220 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
04:40:3104:40:31,221 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@49854d93 - Resource [logback.xml] occurs multiple times on the classpath.
04:40:3104:40:31,221 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@49854d93 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
04:40:3104:40:31,221 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@49854d93 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
04:40:3104:40:31,445 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
04:40:3104:40:31,445 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
04:40:3104:40:31,465 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
04:40:3104:40:31,467 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@29d7d117 - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
04:40:3104:40:31,467 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@29d7d117 - Please move "immediateFlush" property into the enclosing appender.
04:40:3104:40:31,532 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@29d7d117 - Setting the "immediateFlush" property of the enclosing appender to true
04:40:3104:40:31,533 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
04:40:3104:40:31,533 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
04:40:3104:40:31,533 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
04:40:3104:40:31,533 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
04:40:3104:40:31,533 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
04:40:3104:40:31,533 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
04:40:3104:40:31,534 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5213a8f7 - End of configuration.
04:40:3104:40:31,536 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@30078038 - Registering current configuration as safe fallback point
04:40:3104:40:31,536 |-INFO in ch.qos.logback.classic.util.ContextInitializer@42141c59 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 317 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
04:40:3104:40:31lifecycle.test-compile:
04:40:31Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
04:40:31Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
04:40:32warning: [options] bootstrap class path not set in conjunction with -source 8
04:40:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
04:40:33import omero.grid.RawAccessRequest;
04:40:33 ^
04:40:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
04:40:33import omero.grid.RawAccessRequest;
04:40:33 ^
04:40:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
04:40:34import omero.grid.RawAccessRequest;
04:40:34 ^
04:40:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
04:40:34import omero.model.ImportJob;
04:40:34 ^
04:40:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
04:40:34import omero.model.ImportJobI;
04:40:34 ^
04:40:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated
04:40:34 IObject link = (IObject) linkClass.newInstance();
04:40:34 ^
04:40:34 where T is a type-variable:
04:40:34 T extends Object declared in class Class
04:40:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
04:40:35 T copy = (T) obj.getClass().newInstance();
04:40:35 ^
04:40:35 where T is a type-variable:
04:40:35 T extends Object declared in class Class
04:40:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
04:40:35 RawAccessRequest raw = new RawAccessRequest();
04:40:35 ^
04:40:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
04:40:35 RawAccessRequest raw = new RawAccessRequest();
04:40:35 ^
04:40:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
04:40:35 raw.repoUuid = legacy.root().getHash().getValue();
04:40:35 ^
04:40:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
04:40:35 raw.command = "rm";
04:40:35 ^
04:40:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
04:40:35 raw.args = Arrays.asList(path);
04:40:35 ^
04:40:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
04:40:35 final IObject link = linkClass.newInstance();
04:40:35 ^
04:40:35 where T is a type-variable:
04:40:35 T extends Object declared in class Class
04:40:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
04:40:35 originalLink.setChild(annotationClass.newInstance());
04:40:35 ^
04:40:35 where T is a type-variable:
04:40:35 T extends Object declared in class Class
04:40:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
04:40:36 RoiResult r = svc.findByImage(id, new RoiOptions());
04:40:36 ^
04:40:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
04:40:36 final RawAccessRequest request = new RawAccessRequest();
04:40:36 ^
04:40:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
04:40:36 final RawAccessRequest request = new RawAccessRequest();
04:40:36 ^
04:40:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
04:40:36 request.repoUuid = repo.root().getHash().getValue();
04:40:36 ^
04:40:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
04:40:36 request.command = "exists";
04:40:36 ^
04:40:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
04:40:36 request.args = Collections.singletonList(dirPath);
04:40:36 ^
04:40:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
04:40:36 final RawAccessRequest request = new RawAccessRequest();
04:40:36 ^
04:40:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
04:40:36 final RawAccessRequest request = new RawAccessRequest();
04:40:36 ^
04:40:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
04:40:36 request.repoUuid = repo.root().getHash().getValue();
04:40:36 ^
04:40:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
04:40:36 request.command = "exists";
04:40:36 ^
04:40:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
04:40:36 request.args = Collections.singletonList(dirName);
04:40:36 ^
04:40:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
04:40:36 final ImportJob importJob = new ImportJobI();
04:40:36 ^
04:40:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
04:40:36 final ImportJob importJob = new ImportJobI();
04:40:36 ^
04:40:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
04:40:36 importJob.setImageName(omero.rtypes.rstring(name));
04:40:36 ^
04:40:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
04:40:36 importJob.setImageDescription(omero.rtypes.rstring(desc));
04:40:36 ^
04:40:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
04:40:36 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
04:40:36 ^
04:40:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
04:40:36 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
04:40:36 ^
04:40:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
04:40:36 final String savedName = sent.getImageName().getValue().toString();
04:40:36 ^
04:40:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
04:40:36 final String savedDesc = sent.getImageDescription().getValue().toString();
04:40:36 ^
04:40:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
04:40:36 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
04:40:36 ^
04:40:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
04:40:36 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
04:40:36 ^
04:40:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
04:40:36 final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
04:40:36 ^
04:40:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
04:40:36 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
04:40:36 ^
04:40:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
04:40:37 RoiResult r = svc.findByImage(image.getId().getValue(),
04:40:37 ^
04:40:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
04:40:37 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
04:40:37 ^
04:40:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
04:40:37 l = svc.getRoiMeasurements(image.getId().getValue(), options);
04:40:37 ^
04:40:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
04:40:37 l = svc.getRoiMeasurements(image.getId().getValue(), options);
04:40:37 ^
04:40:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
04:40:37 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
04:40:37 ^
04:40:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
04:40:37 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
04:40:37 ^
04:40:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
04:40:37 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
04:40:37 ^
04:40:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
04:40:37 table = svc.getTable(f.getId().getValue());
04:40:37 ^
04:40:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
04:40:37 RoiResult r = svc.findByImage(image.getId().getValue(),
04:40:37 ^
04:40:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
04:40:37 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
04:40:37 ^
04:40:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
04:40:37 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
04:40:37 ^
04:40:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
04:40:37 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
04:40:37 ^
04:40:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
04:40:37 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
04:40:37 ^
04:40:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
04:40:37 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
04:40:37 ^
04:40:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
04:40:37 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
04:40:37 ^
04:40:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
04:40:37 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
04:40:37 ^
04:40:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
04:40:37 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
04:40:37 ^
04:40:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Long(long) in Long has been deprecated
04:40:37 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
04:40:37 ^
04:40:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
04:40:37 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
04:40:37 ^
04:40:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
04:40:37 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
04:40:37 ^
04:40:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
04:40:37 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
04:40:37 ^
04:40:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
04:40:37 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
04:40:37 ^
04:40:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
04:40:37 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
04:40:37 ^
04:40:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
04:40:37 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
04:40:37 ^
04:40:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
04:40:37 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
04:40:37 ^
04:40:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
04:40:37 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
04:40:37 ^
04:40:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
04:40:37 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
04:40:37 ^
04:40:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
04:40:37 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
04:40:37 ^
04:40:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
04:40:37 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
04:40:37 ^
04:40:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
04:40:37 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
04:40:37 ^
04:40:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
04:40:37 svc.getShapeStatsRestricted(
04:40:37 ^
04:40:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
04:40:37 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
04:40:37 ^
04:40:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
04:40:37 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
04:40:37 ^
04:40:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
04:40:37 request.typesToIgnore = Collections.singletonList("TagAnnotation");
04:40:37 ^
04:40:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
04:40:37 request.typesToIgnore = Collections.singletonList("IAnnotationLink");
04:40:37 ^
04:40:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
04:40:37 request.typesToIgnore = Collections.singletonList("Annotation");
04:40:37 ^
04:40:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
04:40:37 request.typesToIgnore = Collections.singletonList("Annotation");
04:40:37 ^
04:40:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
04:40:37 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
04:40:37 ^
04:40:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
04:40:37 p2.setRelatedTo(p1);
04:40:37 ^
04:40:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
04:40:37 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
04:40:37 ^
04:40:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
04:40:37 pixels1.setRelatedTo(pixels2);
04:40:37 ^
04:40:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
04:40:37 Pixels pixels = pixels1.getRelatedTo();
04:40:37 ^
04:40:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
04:40:37 Assert.assertNull(pixels1.getRelatedTo());
04:40:37 ^
04:40:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
04:40:37 pixels1.setRelatedTo(pixels2);
04:40:37 ^
04:40:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
04:40:37 Pixels pixels = pixels1.getRelatedTo();
04:40:37 ^
04:40:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
04:40:37 Assert.assertNull(pixels1.getRelatedTo());
04:40:37 ^
04:40:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
04:40:37 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
04:40:37 ^
04:40:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
04:40:37 l = svc.getRoiMeasurements(image.getId().getValue(), options);
04:40:37 ^
04:40:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
04:40:37 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
04:40:37 ^
04:40:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
04:40:37 l = svc.getRoiMeasurements(image.getId().getValue(), options);
04:40:37 ^
04:40:38Note: Some input files use unchecked or unsafe operations.
04:40:38Note: Recompile with -Xlint:unchecked for details.
04:40:3888 warnings
04:40:38Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_445507524.tmp
04:40:38Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar
04:40:38:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
04:40:38:: delivering :: omero#OmeroJava-test;working@038f72291f19 :: 5.6.3-513-f39b7a8d4f-ice36 :: integration :: Fri Sep 27 04:40:26 UTC 2024
04:40:38 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml
04:40:38:: publishing :: omero#OmeroJava-test
04:40:38 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-513-f39b7a8d4f-ice36.jar
04:40:38 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-513-f39b7a8d4f-ice36.xml
04:40:3804:40:38build-eclipse:
04:40:38No sub-builds to iterate on
04:40:38Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
04:40:3804:40:38retrieve:
04:40:38:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
04:40:38:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
04:40:4104:40:41prepare:
04:40:41Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
04:40:4204:40:42release-clients:
04:40:42Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-513-f39b7a8d4f-ice36.zip
04:40:4804:40:48release-zip:
04:40:48Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-513-f39b7a8d4f-ice36.zip
04:41:0004:41:00BUILD SUCCESSFUL
04:41:00Total time: 1 minute 22 seconds
04:41:00++ '[' -d .git ']'
04:41:00++ python3 ./build.py release-src
04:41:00OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0
04:41:00Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
04:41:0104:41:01release-src-git:
04:41:01Releasing openmicroscopy-5.6.3-513-f39b7a8d4f-ice36
04:41:03 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-513-f39b7a8d4f-ice36.zip
04:41:03 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-513-f39b7a8d4f-ice36-base.zip
04:41:0504:41:05BUILD SUCCESSFUL
04:41:05Total time: 4 seconds
04:41:05++ echo BUILD_NUMBER=189
04:41:05++ echo OMERO_BRANCH=merge_ci
04:41:05++ git_info
04:41:05+++ git rev-parse HEAD
04:41:05++ HEAD=f39b7a8d4fc8834e570bb5995f8fbc3e9c557bc0
04:41:05++ git log --max-count=1 f39b7a8d4fc8834e570bb5995f8fbc3e9c557bc0
04:41:05++ env
04:41:05++ sort
04:41:05Archiving artifacts
04:41:33Finished: SUCCESS
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