10:13:41Started by upstream project "Trigger" build number 2710:13:41originally caused by:
10:13:41 Started by user devspace10:13:41Running as SYSTEM
10:13:41Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
10:13:41The recommended git tool is: NONE
10:13:41No credentials specified
10:13:41 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10
10:13:41Fetching changes from the remote Git repository
10:13:41 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
10:13:41Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git10:13:41 > git --version # timeout=10
10:13:41 > git --version # 'git version 2.39.3'
10:13:41 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
10:13:46 > git rev-parse origin/merge_ci^{commit} # timeout=10
10:13:46Checking out Revision f92d3a915e0011bf18e8497fe0fceb4a0948be8a (origin/merge_ci)
10:13:46 > git config core.sparsecheckout # timeout=10
10:13:46 > git checkout -f f92d3a915e0011bf18e8497fe0fceb4a0948be8a # timeout=10
10:13:46Commit message: "Add version.properties to etc/omero.properties"
10:13:46 > git rev-list --no-walk 02d2190d741277aebbf6111ff4a23bf4c9459ef7 # timeout=10
10:13:46Cleaning workspace
10:13:46 > git rev-parse --verify HEAD # timeout=10
10:13:46Resetting working tree
10:13:46 > git reset --hard # timeout=10
10:13:47 > git clean -fdx # timeout=10
10:13:50Copied 6 artifacts from "OMERO-python-superbuild-build" build number 2310:13:50[OMERO-build] $ /bin/bash -xe /tmp/jenkins10755210962756551892.sh
10:13:50+ mv omero-scripts/dist/omero-scripts-5.8.1.dev0.tar.gz .
10:13:50+ cd src
10:13:50+ export OMERO_BRANCH=merge_ci
10:13:50+ OMERO_BRANCH=merge_ci
10:13:50+ OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
10:13:50+ source /home/omero/settings.env
10:13:50++ OMERO_DB_HOST=pg
10:13:50++ OMERO_DB_USER=postgres
10:13:50++ OMERO_DB_PASS=
10:13:50++ OMERO_ROOT_PASS=omero
10:13:50++ OMERO_DATA_DIR=/OMERO
10:13:50++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
10:13:50+ python3 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
10:13:54+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl10:13:57Collecting zeroc-ice==3.6.5
10:13:58 Downloading https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl (31.3 MB)
10:14:00WARNING: You are using pip version 21.2.3; however, version 24.0 is available.
10:14:00You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command.
10:14:00+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U setuptools omero-py
10:14:00Requirement already satisfied: setuptools in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (69.2.0)
10:14:01Requirement already satisfied: omero-py in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (5.19.1)
10:14:01Requirement already satisfied: appdirs in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.4.4)
10:14:01Requirement already satisfied: PyYAML in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (6.0.1)
10:14:01Requirement already satisfied: numpy in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.4)
10:14:01Requirement already satisfied: portalocker in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.8.2)
10:14:01Requirement already satisfied: future in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.0.0)
10:14:01Requirement already satisfied: urllib3<2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.18)
10:14:01Requirement already satisfied: Pillow>=10.0.0 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (10.2.0)
10:14:01Requirement already satisfied: requests in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.31.0)
10:14:01Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (3.6.5)
10:14:01Requirement already satisfied: certifi>=2017.4.17 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (2024.2.2)
10:14:01Requirement already satisfied: charset-normalizer<4,>=2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.3.2)
10:14:01Requirement already satisfied: idna<4,>=2.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.6)
10:14:01WARNING: You are using pip version 21.2.3; however, version 24.0 is available.
10:14:01You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command.
10:14:02+ source docs/hudson/OMERO.sh
10:14:02++ set -e
10:14:02++ set -u
10:14:02++ set -x
10:14:02++ source docs/hudson/functions.sh
10:14:02++ echo Building merge_ci
10:14:02Building merge_ci
10:14:02++ python3 ./build.py build-dev release-all
10:14:02OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0
10:14:04Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
10:14:0610:14:06check-ivy:
10:14:06Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
10:14:06Created dir: /home/omero/workspace/OMERO-build/src/target
10:14:08:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
10:14:08:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
10:14:0910:14:09build-scons:
10:14:09Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
10:14:09No sub-builds to iterate on
10:14:09Entering /home/omero/workspace/OMERO-build/src/components/tools...
10:14:1010:14:10buildlist:
10:14:10:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
10:14:10:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
10:14:1010:14:10clean:
10:14:10Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
10:14:10Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
10:14:1010:14:10python-clean:
10:14:10WARNING: '' not a valid package name; please use only .-separated package names in setup.py
10:14:10/usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-451-f92d3a915e-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
10:14:10 warnings.warn(
10:14:10running clean
10:14:10Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
10:14:10Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
10:14:1110:14:11python-clean:
10:14:11WARNING: '' not a valid package name; please use only .-separated package names in setup.py
10:14:11/usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-451-f92d3a915e-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
10:14:11 warnings.warn(
10:14:11running clean
10:14:11Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
10:14:11Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
10:14:11Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
10:14:11Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
10:14:1110:14:11python-clean:
10:14:11WARNING: '' not a valid package name; please use only .-separated package names in setup.py
10:14:11/usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-451-f92d3a915e-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
10:14:11 warnings.warn(
10:14:11running clean
10:14:11Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
10:14:11Deleting directory /home/omero/workspace/OMERO-build/src/target
10:14:1110:14:11build-scons:
10:14:11Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
10:14:1110:14:11build:
10:14:11No sub-builds to iterate on
10:14:11Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
10:14:11Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
10:14:11Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
10:14:11Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
10:14:1110:14:11tools-init:
10:14:11no-op
10:14:1110:14:11retrieve:
10:14:11:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
10:14:12:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
10:14:12WARNING: An illegal reflective access operation has occurred
10:14:12WARNING: Illegal reflective access by org.apache.ivy.util.url.IvyAuthenticator (file:/home/omero/workspace/OMERO-build/src/lib/repository/ivy-2.4.0.jar) to field java.net.Authenticator.theAuthenticator
10:14:12WARNING: Please consider reporting this to the maintainers of org.apache.ivy.util.url.IvyAuthenticator
10:14:12WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
10:14:12WARNING: All illegal access operations will be denied in a future release
10:15:1410:15:14prepare:
10:15:14Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
10:15:14Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
10:15:14Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
10:15:14Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
10:15:14Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
10:15:14Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
10:15:14Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
10:15:14Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
10:15:14Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
10:15:14Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
10:15:14Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
10:15:14Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
10:15:14Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
10:15:14Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
10:15:14Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
10:15:1410:15:14pre-compile:
10:15:14Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
10:15:14Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
10:15:14Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
10:15:15Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
10:15:15Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
10:15:1510:15:15compile:
10:15:15no-op
10:15:1510:15:15package:
10:15:15Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
10:15:1510:15:15install:
10:15:15:: delivering :: omero#omero_client;working@aa84d84ce982 :: 5.6.3-451-f92d3a915e-ice36 :: integration :: Fri Apr 05 10:14:11 UTC 2024
10:15:15 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
10:15:15:: publishing :: omero#omero_client
10:15:15 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-451-f92d3a915e-ice36/omero_client-5.6.3-451-f92d3a915e-ice36.jar
10:15:15 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-451-f92d3a915e-ice36/omero_client-5.6.3-451-f92d3a915e-ice36.xml
10:15:15Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
10:15:15Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
10:15:1610:15:16retrieve:
10:15:16:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
10:15:16:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
10:15:16Entering /home/omero/workspace/OMERO-build/src/components/tools...
10:15:1610:15:16dist:
10:15:16Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
10:15:16Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
10:15:16Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
10:15:16Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero-scripts-5.8.1.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
10:15:16Copying 28 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
10:15:16Copying 28 files to /home/omero/workspace/OMERO-build/src/dist
10:15:16Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
10:15:16Entering /home/omero/workspace/OMERO-build/src/components/tests...
10:15:16Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
10:15:1610:15:16copy-licenses:
10:15:16Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
10:15:16Created dir: /home/omero/workspace/OMERO-build/src/dist/share
10:15:16Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
10:15:1710:15:17copy-history:
10:15:17Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
10:15:1710:15:17copy-etc:
10:15:17Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
10:15:17Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
10:15:1710:15:17copy-sql:
10:15:17Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
10:15:3610:15:36copy-server:
10:15:36 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.0.11 won
10:15:3610:15:36copy-client:
10:15:36Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
10:15:38 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.0.11 won
10:15:3810:15:38update-version:
10:15:38Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
10:15:3810:15:38create-workdirs:
10:15:38Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
10:15:38Created dir: /home/omero/workspace/OMERO-build/src/dist/var
10:15:3810:15:38copy-luts:
10:15:38Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
10:15:38Copying 39 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
10:15:3810:15:38test-compile:
10:15:38:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
10:15:39Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
10:15:39Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
10:15:39Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
10:15:39Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
10:15:39Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
10:15:39Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
10:15:39Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
10:15:3910:15:39testng-init:
10:15:39:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
10:15:39:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
10:15:4410:15:43,877 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
10:15:4410:15:43,880 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7cfe97db - No custom configurators were discovered as a service.
10:15:4410:15:43,880 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7cfe97db - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
10:15:4410:15:43,884 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7cfe97db - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
10:15:4410:15:43,885 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
10:15:4410:15:43,885 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
10:15:4410:15:43,886 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7cfe97db - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
10:15:4410:15:43,886 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7cfe97db - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
10:15:4410:15:43,888 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7cfe97db - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
10:15:4410:15:43,888 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
10:15:4410:15:43,889 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
10:15:4410:15:43,890 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@664bd35e - Resource [logback.xml] occurs multiple times on the classpath.
10:15:4410:15:43,890 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@664bd35e - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
10:15:4410:15:43,890 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@664bd35e - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
10:15:4410:15:44,417 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
10:15:4410:15:44,417 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
10:15:4410:15:44,449 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
10:15:4410:15:44,452 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@33ce766b - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
10:15:4410:15:44,452 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@33ce766b - Please move "immediateFlush" property into the enclosing appender.
10:15:4410:15:44,603 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@33ce766b - Setting the "immediateFlush" property of the enclosing appender to true
10:15:4410:15:44,604 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
10:15:4410:15:44,604 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
10:15:4410:15:44,604 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
10:15:4410:15:44,604 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
10:15:4410:15:44,604 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
10:15:4410:15:44,604 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
10:15:4410:15:44,606 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5bd8b901 - End of configuration.
10:15:4410:15:44,608 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5390bdee - Registering current configuration as safe fallback point
10:15:4410:15:44,608 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7cfe97db - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 720 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
10:15:4410:15:44lifecycle.test-compile:
10:15:44Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
10:15:44Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
10:15:45warning: [options] bootstrap class path not set in conjunction with -source 8
10:15:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
10:15:48import omero.grid.RawAccessRequest;
10:15:48 ^
10:15:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
10:15:49import omero.grid.RawAccessRequest;
10:15:49 ^
10:15:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
10:15:49import omero.grid.RawAccessRequest;
10:15:49 ^
10:15:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
10:15:49import omero.model.ImportJob;
10:15:49 ^
10:15:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
10:15:49import omero.model.ImportJobI;
10:15:49 ^
10:15:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated
10:15:50 IObject link = (IObject) linkClass.newInstance();
10:15:50 ^
10:15:50 where T is a type-variable:
10:15:50 T extends Object declared in class Class
10:15:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
10:15:51 T copy = (T) obj.getClass().newInstance();
10:15:51 ^
10:15:51 where T is a type-variable:
10:15:51 T extends Object declared in class Class
10:15:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
10:15:51 RawAccessRequest raw = new RawAccessRequest();
10:15:51 ^
10:15:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
10:15:51 RawAccessRequest raw = new RawAccessRequest();
10:15:51 ^
10:15:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
10:15:51 raw.repoUuid = legacy.root().getHash().getValue();
10:15:51 ^
10:15:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
10:15:51 raw.command = "rm";
10:15:51 ^
10:15:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
10:15:51 raw.args = Arrays.asList(path);
10:15:51 ^
10:15:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
10:15:51 final IObject link = linkClass.newInstance();
10:15:51 ^
10:15:51 where T is a type-variable:
10:15:51 T extends Object declared in class Class
10:15:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
10:15:51 originalLink.setChild(annotationClass.newInstance());
10:15:51 ^
10:15:51 where T is a type-variable:
10:15:51 T extends Object declared in class Class
10:15:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
10:15:52 RoiResult r = svc.findByImage(id, new RoiOptions());
10:15:52 ^
10:15:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
10:15:52 final RawAccessRequest request = new RawAccessRequest();
10:15:52 ^
10:15:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
10:15:52 final RawAccessRequest request = new RawAccessRequest();
10:15:52 ^
10:15:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
10:15:52 request.repoUuid = repo.root().getHash().getValue();
10:15:52 ^
10:15:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
10:15:52 request.command = "exists";
10:15:52 ^
10:15:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
10:15:52 request.args = Collections.singletonList(dirPath);
10:15:52 ^
10:15:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
10:15:52 final RawAccessRequest request = new RawAccessRequest();
10:15:52 ^
10:15:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
10:15:52 final RawAccessRequest request = new RawAccessRequest();
10:15:52 ^
10:15:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
10:15:52 request.repoUuid = repo.root().getHash().getValue();
10:15:52 ^
10:15:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
10:15:52 request.command = "exists";
10:15:52 ^
10:15:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
10:15:52 request.args = Collections.singletonList(dirName);
10:15:52 ^
10:15:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
10:15:52 final ImportJob importJob = new ImportJobI();
10:15:52 ^
10:15:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
10:15:52 final ImportJob importJob = new ImportJobI();
10:15:52 ^
10:15:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
10:15:52 importJob.setImageName(omero.rtypes.rstring(name));
10:15:52 ^
10:15:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
10:15:52 importJob.setImageDescription(omero.rtypes.rstring(desc));
10:15:52 ^
10:15:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
10:15:52 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
10:15:52 ^
10:15:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
10:15:52 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
10:15:52 ^
10:15:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
10:15:52 final String savedName = sent.getImageName().getValue().toString();
10:15:52 ^
10:15:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
10:15:52 final String savedDesc = sent.getImageDescription().getValue().toString();
10:15:52 ^
10:15:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
10:15:52 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
10:15:52 ^
10:15:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
10:15:52 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
10:15:52 ^
10:15:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
10:15:52 final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
10:15:52 ^
10:15:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
10:15:52 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
10:15:52 ^
10:15:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
10:15:53 RoiResult r = svc.findByImage(image.getId().getValue(),
10:15:53 ^
10:15:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
10:15:53 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
10:15:53 ^
10:15:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
10:15:53 l = svc.getRoiMeasurements(image.getId().getValue(), options);
10:15:53 ^
10:15:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
10:15:53 l = svc.getRoiMeasurements(image.getId().getValue(), options);
10:15:53 ^
10:15:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
10:15:53 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
10:15:53 ^
10:15:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
10:15:53 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
10:15:53 ^
10:15:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
10:15:53 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
10:15:53 ^
10:15:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
10:15:53 table = svc.getTable(f.getId().getValue());
10:15:53 ^
10:15:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
10:15:53 RoiResult r = svc.findByImage(image.getId().getValue(),
10:15:53 ^
10:15:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
10:15:53 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
10:15:53 ^
10:15:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
10:15:53 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
10:15:53 ^
10:15:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
10:15:53 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
10:15:53 ^
10:15:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
10:15:53 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
10:15:53 ^
10:15:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
10:15:53 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
10:15:53 ^
10:15:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
10:15:53 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
10:15:53 ^
10:15:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
10:15:53 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
10:15:53 ^
10:15:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
10:15:53 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
10:15:53 ^
10:15:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Long(long) in Long has been deprecated
10:15:53 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
10:15:53 ^
10:15:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
10:15:53 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
10:15:53 ^
10:15:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
10:15:53 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
10:15:53 ^
10:15:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
10:15:53 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
10:15:53 ^
10:15:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
10:15:53 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
10:15:53 ^
10:15:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
10:15:53 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
10:15:53 ^
10:15:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
10:15:53 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
10:15:53 ^
10:15:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
10:15:53 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
10:15:53 ^
10:15:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
10:15:53 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
10:15:53 ^
10:15:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
10:15:53 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
10:15:53 ^
10:15:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
10:15:53 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
10:15:53 ^
10:15:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
10:15:53 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
10:15:53 ^
10:15:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
10:15:53 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
10:15:53 ^
10:15:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
10:15:53 svc.getShapeStatsRestricted(
10:15:53 ^
10:15:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
10:15:53 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
10:15:53 ^
10:15:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
10:15:53 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
10:15:53 ^
10:15:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
10:15:53 request.typesToIgnore = Collections.singletonList("TagAnnotation");
10:15:53 ^
10:15:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
10:15:53 request.typesToIgnore = Collections.singletonList("IAnnotationLink");
10:15:53 ^
10:15:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
10:15:53 request.typesToIgnore = Collections.singletonList("Annotation");
10:15:53 ^
10:15:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
10:15:53 request.typesToIgnore = Collections.singletonList("Annotation");
10:15:53 ^
10:15:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
10:15:53 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
10:15:53 ^
10:15:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
10:15:53 p2.setRelatedTo(p1);
10:15:53 ^
10:15:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
10:15:53 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
10:15:53 ^
10:15:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
10:15:53 pixels1.setRelatedTo(pixels2);
10:15:53 ^
10:15:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
10:15:53 Pixels pixels = pixels1.getRelatedTo();
10:15:53 ^
10:15:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
10:15:53 Assert.assertNull(pixels1.getRelatedTo());
10:15:53 ^
10:15:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
10:15:53 pixels1.setRelatedTo(pixels2);
10:15:53 ^
10:15:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
10:15:53 Pixels pixels = pixels1.getRelatedTo();
10:15:53 ^
10:15:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
10:15:53 Assert.assertNull(pixels1.getRelatedTo());
10:15:53 ^
10:15:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
10:15:53 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
10:15:53 ^
10:15:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
10:15:53 l = svc.getRoiMeasurements(image.getId().getValue(), options);
10:15:53 ^
10:15:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
10:15:53 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
10:15:53 ^
10:15:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
10:15:53 l = svc.getRoiMeasurements(image.getId().getValue(), options);
10:15:53 ^
10:15:54Note: Some input files use unchecked or unsafe operations.
10:15:54Note: Recompile with -Xlint:unchecked for details.
10:15:5488 warnings
10:15:54Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_328370346.tmp
10:15:54Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar
10:15:54:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
10:15:54:: delivering :: omero#OmeroJava-test;working@aa84d84ce982 :: 5.6.3-451-f92d3a915e-ice36 :: integration :: Fri Apr 05 10:15:39 UTC 2024
10:15:54 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml
10:15:54:: publishing :: omero#OmeroJava-test
10:15:54 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-451-f92d3a915e-ice36.jar
10:15:54 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-451-f92d3a915e-ice36.xml
10:15:5410:15:54build-eclipse:
10:15:54No sub-builds to iterate on
10:15:54Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
10:15:5410:15:54retrieve:
10:15:54:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
10:15:54:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
10:15:5710:15:57prepare:
10:15:57Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
10:15:5810:15:58release-clients:
10:15:58Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-451-f92d3a915e-ice36.zip
10:16:0410:16:04release-zip:
10:16:04Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-451-f92d3a915e-ice36.zip
10:16:1810:16:18BUILD SUCCESSFUL
10:16:18Total time: 2 minutes 13 seconds
10:16:18++ '[' -d .git ']'
10:16:18++ python3 ./build.py release-src
10:16:19OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0
10:16:19Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
10:16:2010:16:20release-src-git:
10:16:20Releasing openmicroscopy-5.6.3-451-f92d3a915e-ice36
10:16:23 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-451-f92d3a915e-ice36.zip
10:16:23 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-451-f92d3a915e-ice36-base.zip
10:16:2410:16:24BUILD SUCCESSFUL
10:16:24Total time: 5 seconds
10:16:24++ echo BUILD_NUMBER=23
10:16:24++ echo OMERO_BRANCH=merge_ci
10:16:24++ git_info
10:16:24+++ git rev-parse HEAD
10:16:24++ HEAD=f92d3a915e0011bf18e8497fe0fceb4a0948be8a
10:16:24++ git log --max-count=1 f92d3a915e0011bf18e8497fe0fceb4a0948be8a
10:16:24++ env
10:16:24++ sort
10:16:24Archiving artifacts
10:16:55Finished: SUCCESS
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