01:20:33Started by upstream project "Trigger" build number 3101:20:33originally caused by:
01:20:33 Started by timer
01:20:33Running as SYSTEM
01:20:33Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
01:20:33The recommended git tool is: NONE
01:20:33No credentials specified
01:20:33 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10
01:20:33Fetching changes from the remote Git repository
01:20:33 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
01:20:33Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git01:20:33 > git --version # timeout=10
01:20:33 > git --version # 'git version 2.52.0'
01:20:33 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
01:20:37 > git rev-parse origin/merge_ci^{commit} # timeout=10
01:20:37Checking out Revision 4868227d9f24037f68979923205657dd0f89ef37 (origin/merge_ci)
01:20:37 > git config core.sparsecheckout # timeout=10
01:20:37 > git checkout -f 4868227d9f24037f68979923205657dd0f89ef37 # timeout=10
01:20:40Commit message: "Add version.properties to etc/omero.properties"
01:20:40 > git rev-list --no-walk 0a778d737831fe93de117b429f7410b9fb73a832 # timeout=10
01:20:40Cleaning workspace
01:20:40 > git rev-parse --verify HEAD # timeout=10
01:20:40Resetting working tree
01:20:40 > git reset --hard # timeout=10
01:20:40 > git clean -fdx # timeout=10
01:21:08Copied 6 artifacts from "OMERO-python-superbuild-build" build number 2001:21:08[OMERO-build] $ /bin/bash -xe /tmp/jenkins13766854043949948966.sh
01:21:08+ mv omero-scripts/dist/omero_scripts-5.10.1.dev0.tar.gz .
01:21:08+ cd src
01:21:08+ export OMERO_BRANCH=merge_ci
01:21:08+ OMERO_BRANCH=merge_ci
01:21:08+ OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
01:21:08+ rm -rf /home/omero/workspace/OMERO-build/omero-virtualenv
01:21:36+ source /home/omero/settings.env
01:21:36++ OMERO_DB_HOST=pg
01:21:36++ OMERO_DB_USER=postgres
01:21:36++ OMERO_DB_PASS=
01:21:36++ OMERO_ROOT_PASS=omero
01:21:36++ OMERO_DATA_DIR=/OMERO
01:21:36++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
01:21:36+ python3.11 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
01:21:56+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl01:21:57Collecting zeroc-ice==3.6.5
01:21:58 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
01:22:01 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 10.4 MB/s eta 0:00:00
01:22:01Installing collected packages: zeroc-ice
01:22:05Successfully installed zeroc-ice-3.6.5
01:22:0501:22:05[notice] A new release of pip available: 22.3.1 -> 26.1.2
01:22:05[notice] To update, run: python3.11 -m pip install --upgrade pip
01:22:05+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U 'setuptools<66' omero-py
01:22:06Requirement already satisfied: setuptools<66 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (65.5.1)
01:22:06Collecting setuptools<66
01:22:06 Using cached setuptools-65.7.0-py3-none-any.whl (1.2 MB)
01:22:07Collecting omero-py
01:22:07 Using cached omero_py-5.22.1-py3-none-any.whl (2.8 MB)
01:22:07Collecting appdirs
01:22:07 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
01:22:07Collecting future
01:22:07 Using cached future-1.0.0-py3-none-any.whl (491 kB)
01:22:07Collecting numpy<3,>=2
01:22:07 Using cached numpy-2.4.6-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB)
01:22:08Collecting Pillow>=10.0.0
01:22:08 Using cached pillow-12.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (6.9 MB)
01:22:08Collecting PyYAML
01:22:08 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB)
01:22:08Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (from omero-py) (3.6.5)
01:22:09Collecting requests
01:22:09 Using cached requests-2.34.2-py3-none-any.whl (73 kB)
01:22:09Collecting portalocker
01:22:09 Using cached portalocker-3.2.0-py3-none-any.whl (22 kB)
01:22:09Collecting charset_normalizer<4,>=2
01:22:09 Using cached charset_normalizer-3.4.9-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (221 kB)
01:22:09Collecting idna<4,>=2.5
01:22:09 Using cached idna-3.18-py3-none-any.whl (65 kB)
01:22:09Collecting urllib3<3,>=1.26
01:22:09 Using cached urllib3-2.7.0-py3-none-any.whl (131 kB)
01:22:10Collecting certifi>=2023.5.7
01:22:10 Using cached certifi-2026.7.22-py3-none-any.whl (136 kB)
01:22:10Installing collected packages: appdirs, urllib3, setuptools, PyYAML, portalocker, Pillow, numpy, idna, future, charset_normalizer, certifi, requests, omero-py
01:22:11 Attempting uninstall: setuptools
01:22:11 Found existing installation: setuptools 65.5.1
01:22:12 Uninstalling setuptools-65.5.1:
01:22:12 Successfully uninstalled setuptools-65.5.1
01:23:04Successfully installed Pillow-12.3.0 PyYAML-6.0.3 appdirs-1.4.4 certifi-2026.7.22 charset_normalizer-3.4.9 future-1.0.0 idna-3.18 numpy-2.4.6 omero-py-5.22.1 portalocker-3.2.0 requests-2.34.2 setuptools-65.7.0 urllib3-2.7.0
01:23:0401:23:04[notice] A new release of pip available: 22.3.1 -> 26.1.2
01:23:04[notice] To update, run: python3.11 -m pip install --upgrade pip
01:23:04+ source /home/omero/workspace/OMERO-build/omero-virtualenv/bin/activate
01:23:04++ deactivate nondestructive
01:23:04++ '[' -n '' ']'
01:23:04++ '[' -n '' ']'
01:23:04++ hash -r
01:23:04++ '[' -n '' ']'
01:23:04++ unset VIRTUAL_ENV
01:23:04++ unset VIRTUAL_ENV_PROMPT
01:23:04++ '[' '!' nondestructive = nondestructive ']'
01:23:04++ VIRTUAL_ENV=/home/omero/workspace/OMERO-build/omero-virtualenv
01:23:04++ export VIRTUAL_ENV
01:23:04++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:23:04++ PATH=/home/omero/workspace/OMERO-build/omero-virtualenv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:23:04++ export PATH
01:23:04++ '[' -n '' ']'
01:23:04++ '[' -z '' ']'
01:23:04++ _OLD_VIRTUAL_PS1=
01:23:04++ PS1='(omero-virtualenv) '
01:23:04++ export PS1
01:23:04++ VIRTUAL_ENV_PROMPT='(omero-virtualenv) '
01:23:04++ export VIRTUAL_ENV_PROMPT
01:23:04++ hash -r
01:23:04+ source docs/hudson/OMERO.sh
01:23:04++ set -e
01:23:04++ set -u
01:23:04++ set -x
01:23:04++ source docs/hudson/functions.sh
01:23:04++ echo Building merge_ci
01:23:04Building merge_ci
01:23:04++ python3 ./build.py build-dev release-all
01:23:04Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
01:23:0501:23:05check-ivy:
01:23:05Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
01:23:05Created dir: /home/omero/workspace/OMERO-build/src/target
01:23:06:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
01:23:06:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:23:0701:23:07build-scons:
01:23:07Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
01:23:09No sub-builds to iterate on
01:23:09Entering /home/omero/workspace/OMERO-build/src/components/tools...
01:23:1001:23:10buildlist:
01:23:10:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
01:23:10:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:23:1001:23:10clean:
01:23:10Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
01:23:10Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
01:23:1101:23:11python-clean:
01:23:11WARNING: '' not a valid package name; please use only .-separated package names in setup.py
01:23:11/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-637-4868227d9f-ice36-b22') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
01:23:11 warnings.warn(
01:23:11running clean
01:23:11Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
01:23:12Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
01:23:1201:23:12python-clean:
01:23:12WARNING: '' not a valid package name; please use only .-separated package names in setup.py
01:23:12/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-637-4868227d9f-ice36-b22') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
01:23:12 warnings.warn(
01:23:12running clean
01:23:12Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
01:23:13Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
01:23:13Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
01:23:13Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
01:23:1401:23:14python-clean:
01:23:14WARNING: '' not a valid package name; please use only .-separated package names in setup.py
01:23:14/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-637-4868227d9f-ice36-b22') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
01:23:14 warnings.warn(
01:23:14running clean
01:23:14Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
01:23:14Deleting directory /home/omero/workspace/OMERO-build/src/target
01:23:1501:23:15build-scons:
01:23:15Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
01:23:1701:23:17build:
01:23:17No sub-builds to iterate on
01:23:17Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
01:23:17Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
01:23:18Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
01:23:18Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
01:23:1801:23:18tools-init:
01:23:18no-op
01:23:1901:23:19retrieve:
01:23:19:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
01:23:19:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:24:3701:24:37prepare:
01:24:37Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
01:24:37Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
01:24:37Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
01:24:37Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
01:24:37Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
01:24:37Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
01:24:37Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
01:24:37Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
01:24:37Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
01:24:37Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
01:24:37Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
01:24:37Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
01:24:37Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
01:24:37Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
01:24:37Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
01:24:3701:24:37pre-compile:
01:24:37Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
01:24:39Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
01:24:46Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
01:24:50Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
01:24:51Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
01:24:5301:24:53compile:
01:24:53no-op
01:24:5301:24:53package:
01:24:53Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
01:24:5701:24:57install:
01:24:57:: delivering :: omero#omero_client;working@efd076742dd1 :: 5.6.3-637-4868227d9f-ice36-b22 :: integration :: Mon Jul 27 01:23:18 UTC 2026
01:24:57 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
01:24:57:: publishing :: omero#omero_client
01:24:57 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-637-4868227d9f-ice36-b22/omero_client-5.6.3-637-4868227d9f-ice36-b22.jar
01:24:57 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-637-4868227d9f-ice36-b22/omero_client-5.6.3-637-4868227d9f-ice36-b22.xml
01:24:58Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
01:24:58Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
01:24:5801:24:58retrieve:
01:24:58:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
01:24:58:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:24:59Entering /home/omero/workspace/OMERO-build/src/components/tools...
01:24:5901:24:59dist:
01:24:59Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
01:24:59Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
01:24:59Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
01:24:59Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.10.1.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
01:25:00Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
01:25:00Copying 29 files to /home/omero/workspace/OMERO-build/src/dist
01:25:00Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
01:25:01Entering /home/omero/workspace/OMERO-build/src/components/tests...
01:25:01Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
01:25:0201:25:02copy-licenses:
01:25:02Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
01:25:02Created dir: /home/omero/workspace/OMERO-build/src/dist/share
01:25:02Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
01:25:0301:25:03copy-history:
01:25:03Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
01:25:0301:25:03copy-etc:
01:25:03Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
01:25:03Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
01:25:0301:25:03copy-sql:
01:25:03Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
01:25:1601:25:16copy-server:
01:25:16 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.1.9 won
01:25:2101:25:21copy-client:
01:25:21Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
01:25:26 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.1.9 won
01:25:3001:25:30update-version:
01:25:30Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
01:25:3001:25:30create-workdirs:
01:25:30Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
01:25:30Created dir: /home/omero/workspace/OMERO-build/src/dist/var
01:25:30Created dir: /home/omero/workspace/OMERO-build/src/dist/var/tmp
01:25:3001:25:30copy-luts:
01:25:30Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
01:25:30Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
01:25:3101:25:31test-compile:
01:25:31:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:25:31Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
01:25:32Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
01:25:32Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
01:25:32Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
01:25:32Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
01:25:33Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
01:25:33Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
01:25:3301:25:33testng-init:
01:25:33:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
01:25:33:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:25:4201:25:42,328 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.16
01:25:4201:25:42,331 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1492c9d - No custom configurators were discovered as a service.
01:25:4201:25:42,331 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1492c9d - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
01:25:4201:25:42,335 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1492c9d - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
01:25:4201:25:42,339 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
01:25:4201:25:42,342 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
01:25:4201:25:42,343 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1492c9d - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 8 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
01:25:4201:25:42,343 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1492c9d - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
01:25:4201:25:42,345 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1492c9d - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
01:25:4201:25:42,348 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
01:25:4201:25:42,350 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
01:25:4201:25:42,352 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@24df8abf - Resource [logback.xml] occurs multiple times on the classpath.
01:25:4201:25:42,352 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@24df8abf - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
01:25:4201:25:42,352 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@24df8abf - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
01:25:4201:25:42,585 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
01:25:4201:25:42,586 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
01:25:4201:25:42,608 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
01:25:4201:25:42,610 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@390d47db - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
01:25:4201:25:42,610 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@390d47db - Please move "immediateFlush" property into the enclosing appender.
01:25:4201:25:42,683 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@390d47db - Setting the "immediateFlush" property of the enclosing appender to true
01:25:4201:25:42,684 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
01:25:4201:25:42,684 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
01:25:4201:25:42,684 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
01:25:4201:25:42,684 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
01:25:4201:25:42,684 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
01:25:4201:25:42,684 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
01:25:4201:25:42,685 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@6aa09c35 - End of configuration.
01:25:4201:25:42,688 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@22457838 - Registering current configuration as safe fallback point
01:25:4201:25:42,688 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1492c9d - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 343 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
01:25:4201:25:42lifecycle.test-compile:
01:25:42Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
01:25:42Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
01:25:43warning: [options] bootstrap class path not set in conjunction with -source 8
01:25:43warning: [options] source value 8 is obsolete and will be removed in a future release
01:25:43warning: [options] target value 8 is obsolete and will be removed in a future release
01:25:43warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
01:25:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:25:45import omero.grid.RawAccessRequest;
01:25:45 ^
01:25:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:25:45import omero.grid.RawAccessRequest;
01:25:45 ^
01:25:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:25:45import omero.grid.RawAccessRequest;
01:25:45 ^
01:25:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
01:25:45import omero.model.ImportJob;
01:25:45 ^
01:25:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
01:25:45import omero.model.ImportJobI;
01:25:45 ^
01:25:46/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated
01:25:46 IObject link = (IObject) linkClass.newInstance();
01:25:46 ^
01:25:46 where T is a type-variable:
01:25:46 T extends Object declared in class Class
01:25:47/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
01:25:47 T copy = (T) obj.getClass().newInstance();
01:25:47 ^
01:25:47 where T is a type-variable:
01:25:47 T extends Object declared in class Class
01:25:47/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:25:47 RawAccessRequest raw = new RawAccessRequest();
01:25:47 ^
01:25:47/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:25:47 RawAccessRequest raw = new RawAccessRequest();
01:25:47 ^
01:25:47/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
01:25:47 raw.repoUuid = legacy.root().getHash().getValue();
01:25:47 ^
01:25:47/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
01:25:47 raw.command = "rm";
01:25:47 ^
01:25:47/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
01:25:47 raw.args = Arrays.asList(path);
01:25:47 ^
01:25:47/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
01:25:47 final IObject link = linkClass.newInstance();
01:25:47 ^
01:25:47 where T is a type-variable:
01:25:47 T extends Object declared in class Class
01:25:47/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
01:25:47 originalLink.setChild(annotationClass.newInstance());
01:25:47 ^
01:25:47 where T is a type-variable:
01:25:47 T extends Object declared in class Class
01:25:47/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
01:25:47 RoiResult r = svc.findByImage(id, new RoiOptions());
01:25:47 ^
01:25:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:25:48 final RawAccessRequest request = new RawAccessRequest();
01:25:48 ^
01:25:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:25:48 final RawAccessRequest request = new RawAccessRequest();
01:25:48 ^
01:25:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
01:25:48 request.repoUuid = repo.root().getHash().getValue();
01:25:48 ^
01:25:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
01:25:48 request.command = "exists";
01:25:48 ^
01:25:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
01:25:48 request.args = Collections.singletonList(dirPath);
01:25:48 ^
01:25:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:25:48 final RawAccessRequest request = new RawAccessRequest();
01:25:48 ^
01:25:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:25:48 final RawAccessRequest request = new RawAccessRequest();
01:25:48 ^
01:25:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
01:25:48 request.repoUuid = repo.root().getHash().getValue();
01:25:48 ^
01:25:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
01:25:48 request.command = "exists";
01:25:48 ^
01:25:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
01:25:48 request.args = Collections.singletonList(dirName);
01:25:48 ^
01:25:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
01:25:48 final ImportJob importJob = new ImportJobI();
01:25:48 ^
01:25:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
01:25:48 final ImportJob importJob = new ImportJobI();
01:25:48 ^
01:25:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
01:25:48 importJob.setImageName(omero.rtypes.rstring(name));
01:25:48 ^
01:25:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
01:25:48 importJob.setImageDescription(omero.rtypes.rstring(desc));
01:25:48 ^
01:25:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
01:25:48 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
01:25:48 ^
01:25:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
01:25:48 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
01:25:48 ^
01:25:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
01:25:48 final String savedName = sent.getImageName().getValue().toString();
01:25:48 ^
01:25:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
01:25:48 final String savedDesc = sent.getImageDescription().getValue().toString();
01:25:48 ^
01:25:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
01:25:48 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
01:25:48 ^
01:25:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
01:25:48 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
01:25:48 ^
01:25:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
01:25:48 final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
01:25:48 ^
01:25:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
01:25:48 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
01:25:48 ^
01:25:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
01:25:49 RoiResult r = svc.findByImage(image.getId().getValue(),
01:25:49 ^
01:25:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:25:49 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
01:25:49 ^
01:25:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:25:49 l = svc.getRoiMeasurements(image.getId().getValue(), options);
01:25:49 ^
01:25:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:25:49 l = svc.getRoiMeasurements(image.getId().getValue(), options);
01:25:49 ^
01:25:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:25:49 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
01:25:49 ^
01:25:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
01:25:49 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
01:25:49 ^
01:25:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:25:49 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
01:25:49 ^
01:25:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
01:25:49 table = svc.getTable(f.getId().getValue());
01:25:49 ^
01:25:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
01:25:49 RoiResult r = svc.findByImage(image.getId().getValue(),
01:25:49 ^
01:25:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
01:25:49 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
01:25:49 ^
01:25:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
01:25:49 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
01:25:49 ^
01:25:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
01:25:49 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
01:25:49 ^
01:25:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
01:25:49 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
01:25:49 ^
01:25:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:25:49 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
01:25:49 ^
01:25:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:25:49 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
01:25:49 ^
01:25:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:25:49 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
01:25:49 ^
01:25:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:25:49 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
01:25:49 ^
01:25:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Long(long) in Long has been deprecated and marked for removal
01:25:49 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
01:25:49 ^
01:25:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:25:49 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
01:25:49 ^
01:25:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:25:49 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
01:25:49 ^
01:25:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:25:49 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
01:25:49 ^
01:25:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:25:49 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
01:25:49 ^
01:25:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:25:49 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
01:25:49 ^
01:25:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:25:49 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
01:25:49 ^
01:25:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:25:49 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
01:25:49 ^
01:25:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:25:49 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
01:25:49 ^
01:25:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:25:49 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
01:25:49 ^
01:25:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:25:49 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
01:25:49 ^
01:25:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:25:49 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
01:25:49 ^
01:25:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:25:49 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
01:25:49 ^
01:25:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
01:25:49 svc.getShapeStatsRestricted(
01:25:49 ^
01:25:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
01:25:49 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
01:25:49 ^
01:25:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
01:25:49 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
01:25:49 ^
01:25:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
01:25:49 request.typesToIgnore = Collections.singletonList("TagAnnotation");
01:25:49 ^
01:25:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
01:25:49 request.typesToIgnore = Collections.singletonList("IAnnotationLink");
01:25:49 ^
01:25:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
01:25:49 request.typesToIgnore = Collections.singletonList("Annotation");
01:25:49 ^
01:25:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
01:25:49 request.typesToIgnore = Collections.singletonList("Annotation");
01:25:49 ^
01:25:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
01:25:49 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
01:25:49 ^
01:25:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
01:25:49 p2.setRelatedTo(p1);
01:25:49 ^
01:25:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
01:25:49 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
01:25:49 ^
01:25:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
01:25:49 pixels1.setRelatedTo(pixels2);
01:25:49 ^
01:25:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
01:25:49 Pixels pixels = pixels1.getRelatedTo();
01:25:49 ^
01:25:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
01:25:49 Assert.assertNull(pixels1.getRelatedTo());
01:25:49 ^
01:25:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
01:25:49 pixels1.setRelatedTo(pixels2);
01:25:49 ^
01:25:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
01:25:49 Pixels pixels = pixels1.getRelatedTo();
01:25:49 ^
01:25:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
01:25:49 Assert.assertNull(pixels1.getRelatedTo());
01:25:49 ^
01:25:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:25:49 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
01:25:49 ^
01:25:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:25:49 l = svc.getRoiMeasurements(image.getId().getValue(), options);
01:25:49 ^
01:25:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:25:49 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
01:25:49 ^
01:25:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:25:49 l = svc.getRoiMeasurements(image.getId().getValue(), options);
01:25:49 ^
01:25:50Note: Some input files use unchecked or unsafe operations.
01:25:50Note: Recompile with -Xlint:unchecked for details.
01:25:5091 warnings
01:25:50Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_1536170292.tmp
01:25:50Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar
01:25:50:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:25:50:: delivering :: omero#OmeroJava-test;working@efd076742dd1 :: 5.6.3-637-4868227d9f-ice36-b22 :: integration :: Mon Jul 27 01:25:33 UTC 2026
01:25:50 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml
01:25:50:: publishing :: omero#OmeroJava-test
01:25:50 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-637-4868227d9f-ice36-b22.jar
01:25:50 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-637-4868227d9f-ice36-b22.xml
01:25:5001:25:50build-eclipse:
01:25:50No sub-builds to iterate on
01:25:51Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
01:25:5101:25:51retrieve:
01:25:51:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
01:25:51:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:25:5601:25:56prepare:
01:25:56Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
01:26:0001:26:00release-clients:
01:26:00Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-637-4868227d9f-ice36-b22.zip
01:26:0601:26:06release-zip:
01:26:06Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-637-4868227d9f-ice36-b22.zip
01:26:1801:26:18BUILD SUCCESSFUL
01:26:18Total time: 3 minutes 13 seconds
01:26:18++ '[' -d .git ']'
01:26:18++ python3 ./build.py release-src
01:26:18Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
01:26:1901:26:19release-src-git:
01:26:19Releasing openmicroscopy-5.6.3-637-4868227d9f-ice36-b22
01:26:21 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-637-4868227d9f-ice36-b22.zip
01:26:21 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-637-4868227d9f-ice36-b22-base.zip
01:26:2201:26:22BUILD SUCCESSFUL
01:26:22Total time: 4 seconds
01:26:22++ echo BUILD_NUMBER=22
01:26:22++ echo OMERO_BRANCH=merge_ci
01:26:22++ git_info
01:26:22+++ git rev-parse HEAD
01:26:22++ HEAD=4868227d9f24037f68979923205657dd0f89ef37
01:26:22++ git log --max-count=1 4868227d9f24037f68979923205657dd0f89ef37
01:26:22++ env
01:26:22++ sort
01:26:23Archiving artifacts
01:26:40Finished: SUCCESS
