00:34:56Started by upstream project "Trigger" build number 4400:34:56originally caused by:
00:34:56 Started by timer
00:34:56Running as SYSTEM
00:34:56Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
00:34:56The recommended git tool is: NONE
00:34:56No credentials specified
00:34:56 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10
00:34:57Fetching changes from the remote Git repository
00:34:57 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
00:34:57Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git00:34:57 > git --version # timeout=10
00:34:57 > git --version # 'git version 2.47.3'
00:34:57 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
00:34:57 > git rev-parse origin/merge_ci^{commit} # timeout=10
00:34:57Checking out Revision 73afe49d98d184335cec5007155859f52473e8fb (origin/merge_ci)
00:34:57 > git config core.sparsecheckout # timeout=10
00:34:57 > git checkout -f 73afe49d98d184335cec5007155859f52473e8fb # timeout=10
00:34:57Commit message: "Add version.properties to etc/omero.properties"
00:34:57 > git rev-list --no-walk 128585fa6ac07d85c794b30567aaea297a921cf2 # timeout=10
00:34:57Cleaning workspace
00:34:57 > git rev-parse --verify HEAD # timeout=10
00:34:57Resetting working tree
00:34:57 > git reset --hard # timeout=10
00:34:57 > git clean -fdx # timeout=10
00:34:57Copied 6 artifacts from "OMERO-python-superbuild-build" build number 2100:34:57[OMERO-build] $ /bin/bash -xe /tmp/jenkins2584011713790998275.sh
00:34:57+ mv omero-scripts/dist/omero_scripts-5.9.2.dev0.tar.gz .
00:34:57+ cd src
00:34:57+ export OMERO_BRANCH=merge_ci
00:34:57+ OMERO_BRANCH=merge_ci
00:34:57+ OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
00:34:57+ rm -rf /home/omero/workspace/OMERO-build/omero-virtualenv
00:34:58+ source /home/omero/settings.env
00:34:58++ OMERO_DB_HOST=pg
00:34:58++ OMERO_DB_USER=postgres
00:34:58++ OMERO_DB_PASS=
00:34:58++ OMERO_ROOT_PASS=omero
00:34:58++ OMERO_DATA_DIR=/OMERO
00:34:58++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
00:34:58+ python3.11 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
00:35:01+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl00:35:01Collecting zeroc-ice==3.6.5
00:35:02 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
00:35:03 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 19.6 MB/s eta 0:00:00
00:35:04Installing collected packages: zeroc-ice
00:35:04Successfully installed zeroc-ice-3.6.5
00:35:0500:35:05[notice] A new release of pip available: 22.3.1 -> 25.3
00:35:05[notice] To update, run: python3.11 -m pip install --upgrade pip
00:35:05+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U 'setuptools<66' omero-py
00:35:05Requirement already satisfied: setuptools<66 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (65.5.1)
00:35:05Collecting setuptools<66
00:35:05 Using cached setuptools-65.7.0-py3-none-any.whl (1.2 MB)
00:35:05Collecting omero-py
00:35:05 Using cached omero_py-5.21.3-py3-none-any.whl (2.8 MB)
00:35:05Collecting appdirs
00:35:05 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
00:35:05Collecting future
00:35:05 Using cached future-1.0.0-py3-none-any.whl (491 kB)
00:35:06Collecting numpy<3
00:35:06 Using cached numpy-2.4.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.7 MB)
00:35:07Collecting Pillow>=10.0.0
00:35:07 Using cached pillow-12.1.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (7.0 MB)
00:35:07Collecting PyYAML
00:35:07 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB)
00:35:07Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (from omero-py) (3.6.5)
00:35:07Collecting requests
00:35:07 Using cached requests-2.32.5-py3-none-any.whl (64 kB)
00:35:07Collecting portalocker
00:35:07 Using cached portalocker-3.2.0-py3-none-any.whl (22 kB)
00:35:07Collecting charset_normalizer<4,>=2
00:35:07 Using cached charset_normalizer-3.4.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (151 kB)
00:35:07Collecting idna<4,>=2.5
00:35:07 Using cached idna-3.11-py3-none-any.whl (71 kB)
00:35:07Collecting urllib3<3,>=1.21.1
00:35:07 Using cached urllib3-2.6.3-py3-none-any.whl (131 kB)
00:35:07Collecting certifi>=2017.4.17
00:35:07 Using cached certifi-2026.1.4-py3-none-any.whl (152 kB)
00:35:07Installing collected packages: appdirs, urllib3, setuptools, PyYAML, portalocker, Pillow, numpy, idna, future, charset_normalizer, certifi, requests, omero-py
00:35:08 Attempting uninstall: setuptools
00:35:08 Found existing installation: setuptools 65.5.1
00:35:08 Uninstalling setuptools-65.5.1:
00:35:08 Successfully uninstalled setuptools-65.5.1
00:35:13Successfully installed Pillow-12.1.0 PyYAML-6.0.3 appdirs-1.4.4 certifi-2026.1.4 charset_normalizer-3.4.4 future-1.0.0 idna-3.11 numpy-2.4.1 omero-py-5.21.3 portalocker-3.2.0 requests-2.32.5 setuptools-65.7.0 urllib3-2.6.3
00:35:1300:35:13[notice] A new release of pip available: 22.3.1 -> 25.3
00:35:13[notice] To update, run: python3.11 -m pip install --upgrade pip
00:35:13+ source /home/omero/workspace/OMERO-build/omero-virtualenv/bin/activate
00:35:13++ deactivate nondestructive
00:35:13++ '[' -n '' ']'
00:35:13++ '[' -n '' ']'
00:35:13++ hash -r
00:35:13++ '[' -n '' ']'
00:35:13++ unset VIRTUAL_ENV
00:35:13++ unset VIRTUAL_ENV_PROMPT
00:35:13++ '[' '!' nondestructive = nondestructive ']'
00:35:13++ VIRTUAL_ENV=/home/omero/workspace/OMERO-build/omero-virtualenv
00:35:13++ export VIRTUAL_ENV
00:35:13++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:35:13++ PATH=/home/omero/workspace/OMERO-build/omero-virtualenv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:35:13++ export PATH
00:35:13++ '[' -n '' ']'
00:35:13++ '[' -z '' ']'
00:35:13++ _OLD_VIRTUAL_PS1=
00:35:13++ PS1='(omero-virtualenv) '
00:35:13++ export PS1
00:35:13++ VIRTUAL_ENV_PROMPT='(omero-virtualenv) '
00:35:13++ export VIRTUAL_ENV_PROMPT
00:35:13++ hash -r
00:35:13+ source docs/hudson/OMERO.sh
00:35:13++ set -e
00:35:13++ set -u
00:35:13++ set -x
00:35:13++ source docs/hudson/functions.sh
00:35:13++ echo Building merge_ci
00:35:13Building merge_ci
00:35:13++ python3 ./build.py build-dev release-all
00:35:13Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
00:35:1400:35:14check-ivy:
00:35:14Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
00:35:14Created dir: /home/omero/workspace/OMERO-build/src/target
00:35:14:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:35:14:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:35:1400:35:14build-scons:
00:35:14Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
00:35:14No sub-builds to iterate on
00:35:14Entering /home/omero/workspace/OMERO-build/src/components/tools...
00:35:1500:35:15buildlist:
00:35:15:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:35:15:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:35:1500:35:15clean:
00:35:15Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:35:15Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:35:1500:35:15python-clean:
00:35:15WARNING: '' not a valid package name; please use only .-separated package names in setup.py
00:35:15/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-583-73afe49d98-ice36-b21') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
00:35:15 warnings.warn(
00:35:15running clean
00:35:15Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
00:35:15Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
00:35:1500:35:15python-clean:
00:35:15WARNING: '' not a valid package name; please use only .-separated package names in setup.py
00:35:15/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-583-73afe49d98-ice36-b21') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
00:35:15 warnings.warn(
00:35:15running clean
00:35:16Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
00:35:16Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
00:35:16Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:35:16Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:35:1600:35:16python-clean:
00:35:16WARNING: '' not a valid package name; please use only .-separated package names in setup.py
00:35:16/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-583-73afe49d98-ice36-b21') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
00:35:16 warnings.warn(
00:35:16running clean
00:35:16Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
00:35:16Deleting directory /home/omero/workspace/OMERO-build/src/target
00:35:1600:35:16build-scons:
00:35:16Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
00:35:1600:35:16build:
00:35:16No sub-builds to iterate on
00:35:16Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:35:16Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:35:16Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
00:35:16Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
00:35:1600:35:16tools-init:
00:35:16no-op
00:35:1700:35:17retrieve:
00:35:17:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:35:17:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:35:5800:35:58prepare:
00:35:58Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
00:35:58Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
00:35:58Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
00:35:58Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:35:58Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:35:58Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
00:35:58Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
00:35:58Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:35:58Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:35:58Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:35:58Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:35:58Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:35:58Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:35:58Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:35:58Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:35:5800:35:58pre-compile:
00:35:58Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:35:58Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:35:58Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:35:58Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:35:58Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:35:5800:35:58compile:
00:35:58no-op
00:35:5800:35:58package:
00:35:58Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
00:35:5900:35:59install:
00:35:59:: delivering :: omero#omero_client;working@57f60e06d356 :: 5.6.3-583-73afe49d98-ice36-b21 :: integration :: Sat Jan 17 00:35:16 UTC 2026
00:35:59 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
00:35:59:: publishing :: omero#omero_client
00:35:59 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-583-73afe49d98-ice36-b21/omero_client-5.6.3-583-73afe49d98-ice36-b21.jar
00:35:59 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-583-73afe49d98-ice36-b21/omero_client-5.6.3-583-73afe49d98-ice36-b21.xml
00:35:59Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:35:59Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:35:5900:35:59retrieve:
00:35:59:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:35:59:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:36:00Entering /home/omero/workspace/OMERO-build/src/components/tools...
00:36:0000:36:00dist:
00:36:00Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
00:36:00Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
00:36:00Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
00:36:00Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.9.2.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
00:36:00Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
00:36:00Copying 29 files to /home/omero/workspace/OMERO-build/src/dist
00:36:00Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
00:36:00Entering /home/omero/workspace/OMERO-build/src/components/tests...
00:36:00Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
00:36:0000:36:00copy-licenses:
00:36:00Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
00:36:00Created dir: /home/omero/workspace/OMERO-build/src/dist/share
00:36:00Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
00:36:0000:36:00copy-history:
00:36:00Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
00:36:0000:36:00copy-etc:
00:36:00Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
00:36:00Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
00:36:0000:36:00copy-sql:
00:36:00Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
00:36:0600:36:06copy-server:
00:36:06 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.1.9 won
00:36:0600:36:06copy-client:
00:36:06Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
00:36:07 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.1.9 won
00:36:0700:36:07update-version:
00:36:07Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
00:36:0700:36:07create-workdirs:
00:36:07Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
00:36:07Created dir: /home/omero/workspace/OMERO-build/src/dist/var
00:36:07Created dir: /home/omero/workspace/OMERO-build/src/dist/var/tmp
00:36:0700:36:07copy-luts:
00:36:07Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
00:36:07Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
00:36:0700:36:07test-compile:
00:36:07:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:36:07Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
00:36:07Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:36:07Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:36:07Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:36:07Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:36:07Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
00:36:07Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
00:36:0800:36:08testng-init:
00:36:08:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:36:08:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:36:1000:36:10,198 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.16
00:36:1000:36:10,200 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5f065ddc - No custom configurators were discovered as a service.
00:36:1000:36:10,200 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5f065ddc - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
00:36:1000:36:10,203 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5f065ddc - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
00:36:1000:36:10,203 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
00:36:1000:36:10,204 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
00:36:1000:36:10,204 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5f065ddc - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
00:36:1000:36:10,204 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5f065ddc - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
00:36:1000:36:10,206 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5f065ddc - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
00:36:1000:36:10,206 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
00:36:1000:36:10,206 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
00:36:1000:36:10,207 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@2c94299a - Resource [logback.xml] occurs multiple times on the classpath.
00:36:1000:36:10,207 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@2c94299a - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
00:36:1000:36:10,207 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@2c94299a - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
00:36:1000:36:10,417 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
00:36:1000:36:10,417 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
00:36:1000:36:10,434 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
00:36:1000:36:10,435 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@39fc5c09 - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
00:36:1000:36:10,435 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@39fc5c09 - Please move "immediateFlush" property into the enclosing appender.
00:36:1000:36:10,489 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@39fc5c09 - Setting the "immediateFlush" property of the enclosing appender to true
00:36:1000:36:10,490 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
00:36:1000:36:10,490 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
00:36:1000:36:10,490 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
00:36:1000:36:10,490 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
00:36:1000:36:10,490 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
00:36:1000:36:10,490 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
00:36:1000:36:10,491 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@777b2207 - End of configuration.
00:36:1000:36:10,493 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@1a7e6989 - Registering current configuration as safe fallback point
00:36:1000:36:10,493 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5f065ddc - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 287 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
00:36:1000:36:10lifecycle.test-compile:
00:36:10Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
00:36:10Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
00:36:10warning: [options] bootstrap class path not set in conjunction with -source 8
00:36:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:36:11import omero.grid.RawAccessRequest;
00:36:11 ^
00:36:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:36:12import omero.grid.RawAccessRequest;
00:36:12 ^
00:36:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:36:12import omero.grid.RawAccessRequest;
00:36:12 ^
00:36:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
00:36:12import omero.model.ImportJob;
00:36:12 ^
00:36:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
00:36:12import omero.model.ImportJobI;
00:36:12 ^
00:36:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated
00:36:12 IObject link = (IObject) linkClass.newInstance();
00:36:12 ^
00:36:12 where T is a type-variable:
00:36:12 T extends Object declared in class Class
00:36:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
00:36:13 T copy = (T) obj.getClass().newInstance();
00:36:13 ^
00:36:13 where T is a type-variable:
00:36:13 T extends Object declared in class Class
00:36:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:36:13 RawAccessRequest raw = new RawAccessRequest();
00:36:13 ^
00:36:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:36:13 RawAccessRequest raw = new RawAccessRequest();
00:36:13 ^
00:36:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
00:36:13 raw.repoUuid = legacy.root().getHash().getValue();
00:36:13 ^
00:36:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
00:36:13 raw.command = "rm";
00:36:13 ^
00:36:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
00:36:13 raw.args = Arrays.asList(path);
00:36:13 ^
00:36:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
00:36:13 final IObject link = linkClass.newInstance();
00:36:13 ^
00:36:13 where T is a type-variable:
00:36:13 T extends Object declared in class Class
00:36:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
00:36:13 originalLink.setChild(annotationClass.newInstance());
00:36:13 ^
00:36:13 where T is a type-variable:
00:36:13 T extends Object declared in class Class
00:36:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
00:36:13 RoiResult r = svc.findByImage(id, new RoiOptions());
00:36:13 ^
00:36:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:36:14 final RawAccessRequest request = new RawAccessRequest();
00:36:14 ^
00:36:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:36:14 final RawAccessRequest request = new RawAccessRequest();
00:36:14 ^
00:36:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
00:36:14 request.repoUuid = repo.root().getHash().getValue();
00:36:14 ^
00:36:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
00:36:14 request.command = "exists";
00:36:14 ^
00:36:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
00:36:14 request.args = Collections.singletonList(dirPath);
00:36:14 ^
00:36:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:36:14 final RawAccessRequest request = new RawAccessRequest();
00:36:14 ^
00:36:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:36:14 final RawAccessRequest request = new RawAccessRequest();
00:36:14 ^
00:36:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
00:36:14 request.repoUuid = repo.root().getHash().getValue();
00:36:14 ^
00:36:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
00:36:14 request.command = "exists";
00:36:14 ^
00:36:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
00:36:14 request.args = Collections.singletonList(dirName);
00:36:14 ^
00:36:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
00:36:14 final ImportJob importJob = new ImportJobI();
00:36:14 ^
00:36:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
00:36:14 final ImportJob importJob = new ImportJobI();
00:36:14 ^
00:36:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
00:36:14 importJob.setImageName(omero.rtypes.rstring(name));
00:36:14 ^
00:36:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
00:36:14 importJob.setImageDescription(omero.rtypes.rstring(desc));
00:36:14 ^
00:36:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
00:36:14 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
00:36:14 ^
00:36:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
00:36:14 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
00:36:14 ^
00:36:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
00:36:14 final String savedName = sent.getImageName().getValue().toString();
00:36:14 ^
00:36:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
00:36:14 final String savedDesc = sent.getImageDescription().getValue().toString();
00:36:14 ^
00:36:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
00:36:14 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
00:36:14 ^
00:36:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
00:36:14 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
00:36:14 ^
00:36:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
00:36:14 final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
00:36:14 ^
00:36:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
00:36:14 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
00:36:14 ^
00:36:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
00:36:14 RoiResult r = svc.findByImage(image.getId().getValue(),
00:36:14 ^
00:36:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:36:14 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:36:14 ^
00:36:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:36:14 l = svc.getRoiMeasurements(image.getId().getValue(), options);
00:36:14 ^
00:36:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:36:14 l = svc.getRoiMeasurements(image.getId().getValue(), options);
00:36:14 ^
00:36:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:36:14 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:36:14 ^
00:36:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
00:36:14 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
00:36:14 ^
00:36:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:36:14 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:36:14 ^
00:36:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
00:36:14 table = svc.getTable(f.getId().getValue());
00:36:14 ^
00:36:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
00:36:14 RoiResult r = svc.findByImage(image.getId().getValue(),
00:36:14 ^
00:36:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
00:36:14 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
00:36:14 ^
00:36:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
00:36:14 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
00:36:14 ^
00:36:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
00:36:14 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
00:36:14 ^
00:36:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
00:36:14 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
00:36:14 ^
00:36:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
00:36:14 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
00:36:14 ^
00:36:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
00:36:14 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
00:36:14 ^
00:36:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
00:36:14 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
00:36:14 ^
00:36:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
00:36:14 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
00:36:14 ^
00:36:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Long(long) in Long has been deprecated and marked for removal
00:36:14 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
00:36:14 ^
00:36:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
00:36:14 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
00:36:14 ^
00:36:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
00:36:14 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
00:36:14 ^
00:36:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
00:36:14 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
00:36:14 ^
00:36:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
00:36:14 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
00:36:14 ^
00:36:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
00:36:14 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
00:36:14 ^
00:36:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
00:36:14 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
00:36:14 ^
00:36:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
00:36:14 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
00:36:14 ^
00:36:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
00:36:14 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
00:36:14 ^
00:36:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
00:36:14 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
00:36:14 ^
00:36:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
00:36:14 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
00:36:14 ^
00:36:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
00:36:14 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
00:36:14 ^
00:36:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
00:36:14 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
00:36:14 ^
00:36:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
00:36:14 svc.getShapeStatsRestricted(
00:36:14 ^
00:36:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
00:36:14 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
00:36:14 ^
00:36:15/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:36:15 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
00:36:15 ^
00:36:15/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
00:36:15 request.typesToIgnore = Collections.singletonList("TagAnnotation");
00:36:15 ^
00:36:15/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
00:36:15 request.typesToIgnore = Collections.singletonList("IAnnotationLink");
00:36:15 ^
00:36:15/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
00:36:15 request.typesToIgnore = Collections.singletonList("Annotation");
00:36:15 ^
00:36:15/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
00:36:15 request.typesToIgnore = Collections.singletonList("Annotation");
00:36:15 ^
00:36:15/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:36:15 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
00:36:15 ^
00:36:15/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:36:15 p2.setRelatedTo(p1);
00:36:15 ^
00:36:15/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:36:15 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
00:36:15 ^
00:36:15/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:36:15 pixels1.setRelatedTo(pixels2);
00:36:15 ^
00:36:15/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:36:15 Pixels pixels = pixels1.getRelatedTo();
00:36:15 ^
00:36:15/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:36:15 Assert.assertNull(pixels1.getRelatedTo());
00:36:15 ^
00:36:15/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:36:15 pixels1.setRelatedTo(pixels2);
00:36:15 ^
00:36:15/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:36:15 Pixels pixels = pixels1.getRelatedTo();
00:36:15 ^
00:36:15/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:36:15 Assert.assertNull(pixels1.getRelatedTo());
00:36:15 ^
00:36:15/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:36:15 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:36:15 ^
00:36:15/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:36:15 l = svc.getRoiMeasurements(image.getId().getValue(), options);
00:36:15 ^
00:36:15/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:36:15 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:36:15 ^
00:36:15/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:36:15 l = svc.getRoiMeasurements(image.getId().getValue(), options);
00:36:15 ^
00:36:15Note: Some input files use unchecked or unsafe operations.
00:36:15Note: Recompile with -Xlint:unchecked for details.
00:36:1588 warnings
00:36:15Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_1041737121.tmp
00:36:15Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar
00:36:15:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:36:15:: delivering :: omero#OmeroJava-test;working@57f60e06d356 :: 5.6.3-583-73afe49d98-ice36-b21 :: integration :: Sat Jan 17 00:36:07 UTC 2026
00:36:15 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml
00:36:15:: publishing :: omero#OmeroJava-test
00:36:15 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-583-73afe49d98-ice36-b21.jar
00:36:15 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-583-73afe49d98-ice36-b21.xml
00:36:1500:36:15build-eclipse:
00:36:15No sub-builds to iterate on
00:36:15Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
00:36:1500:36:15retrieve:
00:36:15:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:36:15:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:36:1700:36:17prepare:
00:36:17Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
00:36:1800:36:18release-clients:
00:36:18Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-583-73afe49d98-ice36-b21.zip
00:36:2300:36:23release-zip:
00:36:23Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-583-73afe49d98-ice36-b21.zip
00:36:3300:36:33BUILD SUCCESSFUL
00:36:33Total time: 1 minute 20 seconds
00:36:33++ '[' -d .git ']'
00:36:33++ python3 ./build.py release-src
00:36:34Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
00:36:3400:36:34release-src-git:
00:36:34Releasing openmicroscopy-5.6.3-583-73afe49d98-ice36-b21
00:36:35 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-583-73afe49d98-ice36-b21.zip
00:36:35 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-583-73afe49d98-ice36-b21-base.zip
00:36:3700:36:37BUILD SUCCESSFUL
00:36:37Total time: 3 seconds
00:36:37++ echo BUILD_NUMBER=21
00:36:37++ echo OMERO_BRANCH=merge_ci
00:36:37++ git_info
00:36:37+++ git rev-parse HEAD
00:36:37++ HEAD=73afe49d98d184335cec5007155859f52473e8fb
00:36:37++ git log --max-count=1 73afe49d98d184335cec5007155859f52473e8fb
00:36:37++ env
00:36:37++ sort
00:36:37Archiving artifacts
00:36:52Finished: SUCCESS
