00:40:29Started by upstream project "Trigger" build number 2300:40:29originally caused by:
00:40:29 Started by timer
00:40:29Running as SYSTEM
00:40:29Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
00:40:29The recommended git tool is: NONE
00:40:29No credentials specified
00:40:29 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10
00:40:29Fetching changes from the remote Git repository
00:40:29 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
00:40:29Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git00:40:29 > git --version # timeout=10
00:40:29 > git --version # 'git version 2.39.3'
00:40:29 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
00:40:34 > git rev-parse origin/merge_ci^{commit} # timeout=10
00:40:34Checking out Revision e0f5d19207134c9a262a0601306d56f1fbf16177 (origin/merge_ci)
00:40:34 > git config core.sparsecheckout # timeout=10
00:40:34 > git checkout -f e0f5d19207134c9a262a0601306d56f1fbf16177 # timeout=10
00:40:34Commit message: "Add version.properties to etc/omero.properties"
00:40:34 > git rev-list --no-walk 047b15e3a55ae7d80157cd9856a74bea15c46065 # timeout=10
00:40:34Cleaning workspace
00:40:34 > git rev-parse --verify HEAD # timeout=10
00:40:34Resetting working tree
00:40:34 > git reset --hard # timeout=10
00:40:34 > git clean -fdx # timeout=10
00:40:35Copied 6 artifacts from "OMERO-python-superbuild-build" build number 2000:40:35[OMERO-build] $ /bin/bash -xe /tmp/jenkins13623379196200316703.sh
00:40:35+ mv omero-scripts/dist/omero-scripts-5.8.1.dev0.tar.gz .
00:40:35+ cd src
00:40:35+ export OMERO_BRANCH=merge_ci
00:40:35+ OMERO_BRANCH=merge_ci
00:40:35+ OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
00:40:35+ source /home/omero/settings.env
00:40:35++ OMERO_DB_HOST=pg
00:40:35++ OMERO_DB_USER=postgres
00:40:35++ OMERO_DB_PASS=
00:40:35++ OMERO_ROOT_PASS=omero
00:40:35++ OMERO_DATA_DIR=/OMERO
00:40:35++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
00:40:35+ python3 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
00:40:38+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl00:40:40Collecting zeroc-ice==3.6.5
00:40:41 Downloading https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl (31.3 MB)
00:40:43WARNING: You are using pip version 21.2.3; however, version 24.0 is available.
00:40:43You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command.
00:40:43+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U setuptools omero-py
00:40:43Requirement already satisfied: setuptools in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (69.2.0)
00:40:44Requirement already satisfied: omero-py in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (5.19.1)
00:40:44Requirement already satisfied: numpy in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.4)
00:40:44Requirement already satisfied: portalocker in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.8.2)
00:40:44Requirement already satisfied: future in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.0.0)
00:40:44Requirement already satisfied: urllib3<2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.18)
00:40:44Requirement already satisfied: PyYAML in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (6.0.1)
00:40:44Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (3.6.5)
00:40:44Requirement already satisfied: requests in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.31.0)
00:40:44Requirement already satisfied: appdirs in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.4.4)
00:40:44Requirement already satisfied: Pillow>=10.0.0 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (10.2.0)
00:40:44Requirement already satisfied: charset-normalizer<4,>=2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.3.2)
00:40:44Requirement already satisfied: idna<4,>=2.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.6)
00:40:44Requirement already satisfied: certifi>=2017.4.17 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (2024.2.2)
00:40:44WARNING: You are using pip version 21.2.3; however, version 24.0 is available.
00:40:44You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command.
00:40:44+ source docs/hudson/OMERO.sh
00:40:44++ set -e
00:40:44++ set -u
00:40:44++ set -x
00:40:44++ source docs/hudson/functions.sh
00:40:44++ echo Building merge_ci
00:40:44Building merge_ci
00:40:44++ python3 ./build.py build-dev release-all
00:40:44OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0
00:40:47Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
00:40:4800:40:48check-ivy:
00:40:48Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
00:40:48Created dir: /home/omero/workspace/OMERO-build/src/target
00:40:49:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:40:49:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:40:5000:40:50build-scons:
00:40:50Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
00:40:51No sub-builds to iterate on
00:40:51Entering /home/omero/workspace/OMERO-build/src/components/tools...
00:40:5100:40:51buildlist:
00:40:51:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:40:51:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:40:5200:40:52clean:
00:40:52Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:40:52Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:40:5200:40:52python-clean:
00:40:52WARNING: '' not a valid package name; please use only .-separated package names in setup.py
00:40:52/usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-437-e0f5d19207-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
00:40:52 warnings.warn(
00:40:52running clean
00:40:52Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
00:40:52Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
00:40:5200:40:52python-clean:
00:40:52WARNING: '' not a valid package name; please use only .-separated package names in setup.py
00:40:52/usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-437-e0f5d19207-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
00:40:52 warnings.warn(
00:40:52running clean
00:40:52Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
00:40:52Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
00:40:52Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:40:52Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:40:5300:40:53python-clean:
00:40:53WARNING: '' not a valid package name; please use only .-separated package names in setup.py
00:40:53/usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-437-e0f5d19207-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
00:40:53 warnings.warn(
00:40:53running clean
00:40:53Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
00:40:53Deleting directory /home/omero/workspace/OMERO-build/src/target
00:40:5300:40:53build-scons:
00:40:53Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
00:40:5300:40:53build:
00:40:53No sub-builds to iterate on
00:40:53Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:40:53Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:40:53Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
00:40:53Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
00:40:5300:40:53tools-init:
00:40:53no-op
00:40:5300:40:53retrieve:
00:40:53:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:40:53:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:40:54WARNING: An illegal reflective access operation has occurred
00:40:54WARNING: Illegal reflective access by org.apache.ivy.util.url.IvyAuthenticator (file:/home/omero/workspace/OMERO-build/src/lib/repository/ivy-2.4.0.jar) to field java.net.Authenticator.theAuthenticator
00:40:54WARNING: Please consider reporting this to the maintainers of org.apache.ivy.util.url.IvyAuthenticator
00:40:54WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
00:40:54WARNING: All illegal access operations will be denied in a future release
00:41:1900:41:19prepare:
00:41:19Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
00:41:19Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
00:41:19Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
00:41:19Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:41:19Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:41:19Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
00:41:19Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
00:41:19Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:41:19Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:41:19Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:41:19Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:41:19Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:41:19Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:41:19Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:41:19Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:41:1900:41:19pre-compile:
00:41:19Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:41:19Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:41:19Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:41:19Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:41:19Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:41:1900:41:19compile:
00:41:19no-op
00:41:1900:41:19package:
00:41:19Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
00:41:2000:41:20install:
00:41:20:: delivering :: omero#omero_client;working@8e0779f03086 :: 5.6.3-437-e0f5d19207-ice36 :: integration :: Tue Apr 02 00:40:53 UTC 2024
00:41:20 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
00:41:20:: publishing :: omero#omero_client
00:41:20 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-437-e0f5d19207-ice36/omero_client-5.6.3-437-e0f5d19207-ice36.jar
00:41:20 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-437-e0f5d19207-ice36/omero_client-5.6.3-437-e0f5d19207-ice36.xml
00:41:20Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:41:20Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:41:2100:41:21retrieve:
00:41:21:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:41:21:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:41:21Entering /home/omero/workspace/OMERO-build/src/components/tools...
00:41:2100:41:21dist:
00:41:21Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
00:41:21Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
00:41:21Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
00:41:21Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero-scripts-5.8.1.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
00:41:21Copying 28 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
00:41:21Copying 28 files to /home/omero/workspace/OMERO-build/src/dist
00:41:21Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
00:41:21Entering /home/omero/workspace/OMERO-build/src/components/tests...
00:41:21Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
00:41:2100:41:21copy-licenses:
00:41:21Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
00:41:21Created dir: /home/omero/workspace/OMERO-build/src/dist/share
00:41:21Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
00:41:2200:41:22copy-history:
00:41:22Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
00:41:2200:41:22copy-etc:
00:41:22Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
00:41:22Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
00:41:2200:41:22copy-sql:
00:41:22Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
00:41:4400:41:44copy-server:
00:41:44 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.0.11 won
00:41:44 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/annotations.jar in [server]: 2.17.100 won
00:41:4400:41:44copy-client:
00:41:44Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
00:41:47 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.0.11 won
00:41:47 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/annotations.jar in [client]: 2.17.100 won
00:41:4700:41:47update-version:
00:41:47Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
00:41:4700:41:47create-workdirs:
00:41:47Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
00:41:47Created dir: /home/omero/workspace/OMERO-build/src/dist/var
00:41:4700:41:47copy-luts:
00:41:47Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
00:41:47Copying 39 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
00:41:4700:41:47test-compile:
00:41:47:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:41:47Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
00:41:47Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:41:47Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:41:47Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:41:47Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:41:47Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
00:41:47Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
00:41:4800:41:48testng-init:
00:41:48:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:41:48:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:41:5200:41:51,921 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
00:41:5200:41:51,924 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6c4ffcf0 - No custom configurators were discovered as a service.
00:41:5200:41:51,924 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6c4ffcf0 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
00:41:5200:41:51,927 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6c4ffcf0 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
00:41:5200:41:51,928 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
00:41:5200:41:51,928 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
00:41:5200:41:51,929 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6c4ffcf0 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
00:41:5200:41:51,929 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6c4ffcf0 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
00:41:5200:41:51,931 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6c4ffcf0 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
00:41:5200:41:51,931 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
00:41:5200:41:51,931 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
00:41:5200:41:51,933 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@fba5072 - Resource [logback.xml] occurs multiple times on the classpath.
00:41:5200:41:51,933 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@fba5072 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
00:41:5200:41:51,933 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@fba5072 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
00:41:5200:41:52,181 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
00:41:5200:41:52,181 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
00:41:5200:41:52,203 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
00:41:5200:41:52,205 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@2a94a702 - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
00:41:5200:41:52,205 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@2a94a702 - Please move "immediateFlush" property into the enclosing appender.
00:41:5200:41:52,270 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@2a94a702 - Setting the "immediateFlush" property of the enclosing appender to true
00:41:5200:41:52,271 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
00:41:5200:41:52,271 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
00:41:5200:41:52,271 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
00:41:5200:41:52,271 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
00:41:5200:41:52,271 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
00:41:5200:41:52,271 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
00:41:5200:41:52,272 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@21da6808 - End of configuration.
00:41:5200:41:52,274 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@3261b8bf - Registering current configuration as safe fallback point
00:41:5200:41:52,274 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6c4ffcf0 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 343 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
00:41:5200:41:52lifecycle.test-compile:
00:41:52Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
00:41:52Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
00:41:53warning: [options] bootstrap class path not set in conjunction with -source 8
00:41:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:41:56import omero.grid.RawAccessRequest;
00:41:56 ^
00:41:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:41:56import omero.grid.RawAccessRequest;
00:41:56 ^
00:41:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:41:56import omero.grid.RawAccessRequest;
00:41:56 ^
00:41:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
00:41:56import omero.model.ImportJob;
00:41:56 ^
00:41:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
00:41:56import omero.model.ImportJobI;
00:41:56 ^
00:41:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated
00:41:57 IObject link = (IObject) linkClass.newInstance();
00:41:57 ^
00:41:57 where T is a type-variable:
00:41:57 T extends Object declared in class Class
00:41:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
00:41:58 T copy = (T) obj.getClass().newInstance();
00:41:58 ^
00:41:58 where T is a type-variable:
00:41:58 T extends Object declared in class Class
00:41:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:41:58 RawAccessRequest raw = new RawAccessRequest();
00:41:58 ^
00:41:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:41:58 RawAccessRequest raw = new RawAccessRequest();
00:41:58 ^
00:41:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
00:41:58 raw.repoUuid = legacy.root().getHash().getValue();
00:41:58 ^
00:41:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
00:41:58 raw.command = "rm";
00:41:58 ^
00:41:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
00:41:58 raw.args = Arrays.asList(path);
00:41:58 ^
00:41:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
00:41:58 final IObject link = linkClass.newInstance();
00:41:58 ^
00:41:58 where T is a type-variable:
00:41:58 T extends Object declared in class Class
00:41:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
00:41:58 originalLink.setChild(annotationClass.newInstance());
00:41:58 ^
00:41:58 where T is a type-variable:
00:41:58 T extends Object declared in class Class
00:41:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
00:41:59 RoiResult r = svc.findByImage(id, new RoiOptions());
00:41:59 ^
00:41:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:41:59 final RawAccessRequest request = new RawAccessRequest();
00:41:59 ^
00:41:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:41:59 final RawAccessRequest request = new RawAccessRequest();
00:41:59 ^
00:41:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
00:41:59 request.repoUuid = repo.root().getHash().getValue();
00:41:59 ^
00:41:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
00:41:59 request.command = "exists";
00:41:59 ^
00:41:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
00:41:59 request.args = Collections.singletonList(dirPath);
00:41:59 ^
00:41:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:41:59 final RawAccessRequest request = new RawAccessRequest();
00:41:59 ^
00:41:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:41:59 final RawAccessRequest request = new RawAccessRequest();
00:41:59 ^
00:41:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
00:41:59 request.repoUuid = repo.root().getHash().getValue();
00:41:59 ^
00:41:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
00:41:59 request.command = "exists";
00:41:59 ^
00:41:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
00:41:59 request.args = Collections.singletonList(dirName);
00:41:59 ^
00:41:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
00:41:59 final ImportJob importJob = new ImportJobI();
00:41:59 ^
00:41:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
00:41:59 final ImportJob importJob = new ImportJobI();
00:41:59 ^
00:41:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
00:41:59 importJob.setImageName(omero.rtypes.rstring(name));
00:41:59 ^
00:41:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
00:41:59 importJob.setImageDescription(omero.rtypes.rstring(desc));
00:41:59 ^
00:41:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
00:41:59 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
00:41:59 ^
00:41:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
00:41:59 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
00:41:59 ^
00:41:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
00:41:59 final String savedName = sent.getImageName().getValue().toString();
00:41:59 ^
00:41:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
00:41:59 final String savedDesc = sent.getImageDescription().getValue().toString();
00:41:59 ^
00:41:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
00:41:59 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
00:41:59 ^
00:41:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
00:41:59 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
00:41:59 ^
00:41:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
00:41:59 final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
00:41:59 ^
00:41:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
00:41:59 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
00:41:59 ^
00:42:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
00:42:00 RoiResult r = svc.findByImage(image.getId().getValue(),
00:42:00 ^
00:42:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:42:00 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:42:00 ^
00:42:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:42:00 l = svc.getRoiMeasurements(image.getId().getValue(), options);
00:42:00 ^
00:42:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:42:00 l = svc.getRoiMeasurements(image.getId().getValue(), options);
00:42:00 ^
00:42:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:42:00 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:42:00 ^
00:42:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
00:42:00 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
00:42:00 ^
00:42:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:42:00 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:42:00 ^
00:42:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
00:42:00 table = svc.getTable(f.getId().getValue());
00:42:00 ^
00:42:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
00:42:00 RoiResult r = svc.findByImage(image.getId().getValue(),
00:42:00 ^
00:42:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
00:42:00 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
00:42:00 ^
00:42:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
00:42:00 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
00:42:00 ^
00:42:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
00:42:00 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
00:42:00 ^
00:42:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
00:42:00 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
00:42:00 ^
00:42:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
00:42:00 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
00:42:00 ^
00:42:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
00:42:00 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
00:42:00 ^
00:42:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
00:42:00 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
00:42:00 ^
00:42:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
00:42:00 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
00:42:00 ^
00:42:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Long(long) in Long has been deprecated
00:42:00 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
00:42:00 ^
00:42:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
00:42:00 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
00:42:00 ^
00:42:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
00:42:00 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
00:42:00 ^
00:42:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
00:42:00 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
00:42:00 ^
00:42:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
00:42:00 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
00:42:00 ^
00:42:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
00:42:00 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
00:42:00 ^
00:42:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
00:42:00 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
00:42:00 ^
00:42:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
00:42:00 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
00:42:00 ^
00:42:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
00:42:00 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
00:42:00 ^
00:42:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
00:42:00 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
00:42:00 ^
00:42:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
00:42:00 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
00:42:00 ^
00:42:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
00:42:00 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
00:42:00 ^
00:42:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
00:42:00 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
00:42:00 ^
00:42:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
00:42:00 svc.getShapeStatsRestricted(
00:42:00 ^
00:42:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
00:42:00 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
00:42:00 ^
00:42:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:42:00 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
00:42:00 ^
00:42:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
00:42:00 request.typesToIgnore = Collections.singletonList("TagAnnotation");
00:42:00 ^
00:42:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
00:42:00 request.typesToIgnore = Collections.singletonList("IAnnotationLink");
00:42:00 ^
00:42:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
00:42:00 request.typesToIgnore = Collections.singletonList("Annotation");
00:42:00 ^
00:42:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
00:42:00 request.typesToIgnore = Collections.singletonList("Annotation");
00:42:00 ^
00:42:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:42:01 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
00:42:01 ^
00:42:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:42:01 p2.setRelatedTo(p1);
00:42:01 ^
00:42:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:42:01 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
00:42:01 ^
00:42:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:42:01 pixels1.setRelatedTo(pixels2);
00:42:01 ^
00:42:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:42:01 Pixels pixels = pixels1.getRelatedTo();
00:42:01 ^
00:42:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:42:01 Assert.assertNull(pixels1.getRelatedTo());
00:42:01 ^
00:42:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:42:01 pixels1.setRelatedTo(pixels2);
00:42:01 ^
00:42:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:42:01 Pixels pixels = pixels1.getRelatedTo();
00:42:01 ^
00:42:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:42:01 Assert.assertNull(pixels1.getRelatedTo());
00:42:01 ^
00:42:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:42:01 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:42:01 ^
00:42:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:42:01 l = svc.getRoiMeasurements(image.getId().getValue(), options);
00:42:01 ^
00:42:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:42:01 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:42:01 ^
00:42:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:42:01 l = svc.getRoiMeasurements(image.getId().getValue(), options);
00:42:01 ^
00:42:01Note: Some input files use unchecked or unsafe operations.
00:42:01Note: Recompile with -Xlint:unchecked for details.
00:42:0188 warnings
00:42:01Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_622221643.tmp
00:42:01Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar
00:42:01:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:42:01:: delivering :: omero#OmeroJava-test;working@8e0779f03086 :: 5.6.3-437-e0f5d19207-ice36 :: integration :: Tue Apr 02 00:41:47 UTC 2024
00:42:01 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml
00:42:01:: publishing :: omero#OmeroJava-test
00:42:01 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-437-e0f5d19207-ice36.jar
00:42:01 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-437-e0f5d19207-ice36.xml
00:42:0100:42:01build-eclipse:
00:42:01No sub-builds to iterate on
00:42:01Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
00:42:0100:42:01retrieve:
00:42:01:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:42:01:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:42:0400:42:04prepare:
00:42:04Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
00:42:0500:42:05release-clients:
00:42:05Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-437-e0f5d19207-ice36.zip
00:42:1100:42:11release-zip:
00:42:11Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-437-e0f5d19207-ice36.zip
00:42:2500:42:25BUILD SUCCESSFUL
00:42:25Total time: 1 minute 38 seconds
00:42:25++ '[' -d .git ']'
00:42:25++ python3 ./build.py release-src
00:42:25OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0
00:42:26Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
00:42:2600:42:26release-src-git:
00:42:26Releasing openmicroscopy-5.6.3-437-e0f5d19207-ice36
00:42:28 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-437-e0f5d19207-ice36.zip
00:42:28 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-437-e0f5d19207-ice36-base.zip
00:42:3000:42:30BUILD SUCCESSFUL
00:42:30Total time: 4 seconds
00:42:30++ echo BUILD_NUMBER=20
00:42:30++ echo OMERO_BRANCH=merge_ci
00:42:30++ git_info
00:42:30+++ git rev-parse HEAD
00:42:30++ HEAD=e0f5d19207134c9a262a0601306d56f1fbf16177
00:42:30++ git log --max-count=1 e0f5d19207134c9a262a0601306d56f1fbf16177
00:42:30++ env
00:42:30++ sort
00:42:30Archiving artifacts
00:43:00Finished: SUCCESS
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