Skip to content
Sign in

Console

Download View as plain text
12:00:30 Started by user devspace
12:00:30 Running as SYSTEM
12:00:30 Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
12:00:30 The recommended git tool is: NONE
12:00:30 No credentials specified
12:00:30  > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10
12:00:30 Fetching changes from the remote Git repository
12:00:30  > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
12:00:30 Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git
12:00:30  > git --version # timeout=10
12:00:30  > git --version # 'git version 2.52.0'
12:00:30  > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
12:00:33  > git rev-parse origin/merge_ci^{commit} # timeout=10
12:00:33 Checking out Revision e0180adcad5483fdffd6be4f17eff77fc3d58c30 (origin/merge_ci)
12:00:33  > git config core.sparsecheckout # timeout=10
12:00:33  > git checkout -f e0180adcad5483fdffd6be4f17eff77fc3d58c30 # timeout=10
12:00:48 Commit message: "Add version.properties to etc/omero.properties"
12:00:48  > git rev-list --no-walk f9a7f8ddff9adc5ee6b6e536c6cd5f93091760d8 # timeout=10
12:00:48 Cleaning workspace
12:00:48  > git rev-parse --verify HEAD # timeout=10
12:00:48 Resetting working tree
12:00:48  > git reset --hard # timeout=10
12:00:48  > git clean -fdx # timeout=10
12:01:20 Copied 6 artifacts from "OMERO-python-superbuild-build" build number 21
12:01:21 [OMERO-build] $ /bin/bash -xe /tmp/jenkins5518794795466279186.sh
12:01:21 + mv omero-scripts/dist/omero_scripts-5.10.1.dev0.tar.gz .
12:01:21 + cd src
12:01:21 + export OMERO_BRANCH=merge_ci
12:01:21 + OMERO_BRANCH=merge_ci
12:01:21 + OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
12:01:21 + rm -rf /home/omero/workspace/OMERO-build/omero-virtualenv
12:01:48 + source /home/omero/settings.env
12:01:48 ++ OMERO_DB_HOST=pg
12:01:48 ++ OMERO_DB_USER=postgres
12:01:48 ++ OMERO_DB_PASS=
12:01:48 ++ OMERO_ROOT_PASS=omero
12:01:48 ++ OMERO_DATA_DIR=/OMERO
12:01:48 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
12:01:48 + python3.11 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
12:02:10 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl
12:02:12 Collecting zeroc-ice==3.6.5
12:02:12   Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
12:02:15      ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 11.5 MB/s eta 0:00:00
12:02:15 Installing collected packages: zeroc-ice
12:02:19 Successfully installed zeroc-ice-3.6.5
12:02:19 
12:02:19 [notice] A new release of pip available: 22.3.1 -> 26.1.2
12:02:19 [notice] To update, run: python3.11 -m pip install --upgrade pip
12:02:19 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U 'setuptools<66' omero-py
12:02:20 Requirement already satisfied: setuptools<66 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (65.5.1)
12:02:20 Collecting setuptools<66
12:02:20   Using cached setuptools-65.7.0-py3-none-any.whl (1.2 MB)
12:02:20 Collecting omero-py
12:02:20   Using cached omero_py-5.22.1-py3-none-any.whl (2.8 MB)
12:02:20 Collecting appdirs
12:02:20   Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
12:02:20 Collecting future
12:02:20   Using cached future-1.0.0-py3-none-any.whl (491 kB)
12:02:21 Collecting numpy<3,>=2
12:02:21   Using cached numpy-2.4.6-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB)
12:02:22 Collecting Pillow>=10.0.0
12:02:22   Using cached pillow-12.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (6.9 MB)
12:02:22 Collecting PyYAML
12:02:22   Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB)
12:02:22 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (from omero-py) (3.6.5)
12:02:22 Collecting requests
12:02:22   Using cached requests-2.34.2-py3-none-any.whl (73 kB)
12:02:22 Collecting portalocker
12:02:22   Using cached portalocker-3.2.0-py3-none-any.whl (22 kB)
12:02:23 Collecting charset_normalizer<4,>=2
12:02:23   Using cached charset_normalizer-3.4.9-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (221 kB)
12:02:23 Collecting idna<4,>=2.5
12:02:23   Using cached idna-3.18-py3-none-any.whl (65 kB)
12:02:23 Collecting urllib3<3,>=1.26
12:02:23   Using cached urllib3-2.7.0-py3-none-any.whl (131 kB)
12:02:23 Collecting certifi>=2023.5.7
12:02:23   Using cached certifi-2026.7.22-py3-none-any.whl (136 kB)
12:02:24 Installing collected packages: appdirs, urllib3, setuptools, PyYAML, portalocker, Pillow, numpy, idna, future, charset_normalizer, certifi, requests, omero-py
12:02:25   Attempting uninstall: setuptools
12:02:25     Found existing installation: setuptools 65.5.1
12:02:25     Uninstalling setuptools-65.5.1:
12:02:26       Successfully uninstalled setuptools-65.5.1
12:03:18 Successfully installed Pillow-12.3.0 PyYAML-6.0.3 appdirs-1.4.4 certifi-2026.7.22 charset_normalizer-3.4.9 future-1.0.0 idna-3.18 numpy-2.4.6 omero-py-5.22.1 portalocker-3.2.0 requests-2.34.2 setuptools-65.7.0 urllib3-2.7.0
12:03:18 
12:03:18 [notice] A new release of pip available: 22.3.1 -> 26.1.2
12:03:18 [notice] To update, run: python3.11 -m pip install --upgrade pip
12:03:18 + source /home/omero/workspace/OMERO-build/omero-virtualenv/bin/activate
12:03:19 ++ deactivate nondestructive
12:03:19 ++ '[' -n '' ']'
12:03:19 ++ '[' -n '' ']'
12:03:19 ++ hash -r
12:03:19 ++ '[' -n '' ']'
12:03:19 ++ unset VIRTUAL_ENV
12:03:19 ++ unset VIRTUAL_ENV_PROMPT
12:03:19 ++ '[' '!' nondestructive = nondestructive ']'
12:03:19 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-build/omero-virtualenv
12:03:19 ++ export VIRTUAL_ENV
12:03:19 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
12:03:19 ++ PATH=/home/omero/workspace/OMERO-build/omero-virtualenv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
12:03:19 ++ export PATH
12:03:19 ++ '[' -n '' ']'
12:03:19 ++ '[' -z '' ']'
12:03:19 ++ _OLD_VIRTUAL_PS1=
12:03:19 ++ PS1='(omero-virtualenv) '
12:03:19 ++ export PS1
12:03:19 ++ VIRTUAL_ENV_PROMPT='(omero-virtualenv) '
12:03:19 ++ export VIRTUAL_ENV_PROMPT
12:03:19 ++ hash -r
12:03:19 + source docs/hudson/OMERO.sh
12:03:19 ++ set -e
12:03:19 ++ set -u
12:03:19 ++ set -x
12:03:19 ++ source docs/hudson/functions.sh
12:03:19 ++ echo Building merge_ci
12:03:19 Building merge_ci
12:03:19 ++ python3 ./build.py build-dev release-all
12:03:19 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
12:03:20 
12:03:20 check-ivy:
12:03:20 Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
12:03:20 Created dir: /home/omero/workspace/OMERO-build/src/target
12:03:20 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
12:03:20 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
12:03:22 
12:03:22 build-scons:
12:03:22 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
12:03:23 No sub-builds to iterate on
12:03:24 Entering /home/omero/workspace/OMERO-build/src/components/tools...
12:03:24 
12:03:24 buildlist:
12:03:24 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
12:03:24 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
12:03:24 
12:03:24 clean:
12:03:24 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
12:03:25 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
12:03:26 
12:03:26 python-clean:
12:03:26 WARNING: '' not a valid package name; please use only .-separated package names in setup.py
12:03:26 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-623-e0180adcad-ice36-b25') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
12:03:26   warnings.warn(
12:03:26 running clean
12:03:26 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
12:03:26 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
12:03:26 
12:03:26 python-clean:
12:03:26 WARNING: '' not a valid package name; please use only .-separated package names in setup.py
12:03:26 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-623-e0180adcad-ice36-b25') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
12:03:26   warnings.warn(
12:03:26 running clean
12:03:27 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
12:03:27 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
12:03:27 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
12:03:27 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
12:03:28 
12:03:28 python-clean:
12:03:28 WARNING: '' not a valid package name; please use only .-separated package names in setup.py
12:03:28 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-623-e0180adcad-ice36-b25') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
12:03:28   warnings.warn(
12:03:28 running clean
12:03:28 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
12:03:28 Deleting directory /home/omero/workspace/OMERO-build/src/target
12:03:29 
12:03:29 build-scons:
12:03:29 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
12:03:31 
12:03:31 build:
12:03:31 No sub-builds to iterate on
12:03:31 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
12:03:31 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
12:03:32 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
12:03:32 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
12:03:32 
12:03:32 tools-init:
12:03:32 no-op
12:03:33 
12:03:33 retrieve:
12:03:33 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
12:03:33 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
12:04:53 
12:04:53 prepare:
12:04:53 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
12:04:53 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
12:04:53 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
12:04:53 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
12:04:53 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
12:04:53 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
12:04:53 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
12:04:53 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
12:04:53 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
12:04:53 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
12:04:53 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
12:04:54 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
12:04:54 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
12:04:54 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
12:04:54 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
12:04:54 
12:04:54 pre-compile:
12:04:54 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
12:04:55 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
12:05:04 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
12:05:09 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
12:05:09 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
12:05:11 
12:05:11 compile:
12:05:11 no-op
12:05:12 
12:05:12 package:
12:05:12 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
12:05:16 
12:05:16 install:
12:05:16 :: delivering :: omero#omero_client;working@4590dbd6a4a0 :: 5.6.3-623-e0180adcad-ice36-b25 :: integration :: Wed Jul 29 12:03:32 UTC 2026
12:05:16 	delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
12:05:16 :: publishing :: omero#omero_client
12:05:17 	published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-623-e0180adcad-ice36-b25/omero_client-5.6.3-623-e0180adcad-ice36-b25.jar
12:05:17 	published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-623-e0180adcad-ice36-b25/omero_client-5.6.3-623-e0180adcad-ice36-b25.xml
12:05:17 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
12:05:17 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
12:05:18 
12:05:18 retrieve:
12:05:18 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
12:05:18 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
12:05:18 Entering /home/omero/workspace/OMERO-build/src/components/tools...
12:05:18 
12:05:18 dist:
12:05:18 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
12:05:18 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
12:05:18 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
12:05:18 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.10.1.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
12:05:19 Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
12:05:20 Copying 29 files to /home/omero/workspace/OMERO-build/src/dist
12:05:20 Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
12:05:20 Entering /home/omero/workspace/OMERO-build/src/components/tests...
12:05:21 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
12:05:22 
12:05:22 copy-licenses:
12:05:22 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
12:05:22 Created dir: /home/omero/workspace/OMERO-build/src/dist/share
12:05:22 Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
12:05:22 
12:05:22 copy-history:
12:05:22 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
12:05:22 
12:05:22 copy-etc:
12:05:22 Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
12:05:23 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
12:05:23 
12:05:23 copy-sql:
12:05:23 Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
12:05:34 
12:05:34 copy-server:
12:05:34 	conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.1.9 won
12:05:39 
12:05:39 copy-client:
12:05:39 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
12:05:43 	conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.1.9 won
12:05:48 
12:05:48 update-version:
12:05:48 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
12:05:48 
12:05:48 create-workdirs:
12:05:48 Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
12:05:48 Created dir: /home/omero/workspace/OMERO-build/src/dist/var
12:05:48 Created dir: /home/omero/workspace/OMERO-build/src/dist/var/tmp
12:05:48 
12:05:48 copy-luts:
12:05:48 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
12:05:48 Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
12:05:49 
12:05:49 test-compile:
12:05:49 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
12:05:49 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
12:05:50 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
12:05:50 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
12:05:50 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
12:05:50 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
12:05:50 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
12:05:51 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
12:05:51 
12:05:51 testng-init:
12:05:51 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
12:05:51 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
12:06:00 12:05:59,765 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.16
12:06:00 12:05:59,768 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1492c9d - No custom configurators were discovered as a service.
12:06:00 12:05:59,768 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1492c9d - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
12:06:00 12:05:59,772 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1492c9d - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
12:06:00 12:05:59,775 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
12:06:00 12:05:59,778 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
12:06:00 12:05:59,779 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1492c9d - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 7 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
12:06:00 12:05:59,779 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1492c9d - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
12:06:00 12:05:59,781 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1492c9d - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
12:06:00 12:05:59,785 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
12:06:00 12:05:59,786 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
12:06:00 12:05:59,788 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@24df8abf - Resource [logback.xml] occurs multiple times on the classpath.
12:06:00 12:05:59,788 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@24df8abf - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
12:06:00 12:05:59,788 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@24df8abf - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
12:06:00 12:06:00,039 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
12:06:00 12:06:00,039 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
12:06:00 12:06:00,062 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
12:06:00 12:06:00,065 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@390d47db - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
12:06:00 12:06:00,065 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@390d47db - Please move "immediateFlush" property into the enclosing appender.
12:06:00 12:06:00,137 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@390d47db - Setting the "immediateFlush" property of the enclosing appender to true
12:06:00 12:06:00,138 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
12:06:00 12:06:00,138 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
12:06:00 12:06:00,138 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
12:06:00 12:06:00,138 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
12:06:00 12:06:00,138 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
12:06:00 12:06:00,138 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
12:06:00 12:06:00,139 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@6aa09c35 - End of configuration.
12:06:00 12:06:00,142 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@22457838 - Registering current configuration as safe fallback point
12:06:00 12:06:00,142 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1492c9d - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 361 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
12:06:00 
12:06:00 lifecycle.test-compile:
12:06:00 Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
12:06:00 Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
12:06:00 warning: [options] bootstrap class path not set in conjunction with -source 8
12:06:00 warning: [options] source value 8 is obsolete and will be removed in a future release
12:06:00 warning: [options] target value 8 is obsolete and will be removed in a future release
12:06:00 warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
12:06:02 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
12:06:02 import omero.grid.RawAccessRequest;
12:06:02                  ^
12:06:03 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
12:06:03 import omero.grid.RawAccessRequest;
12:06:03                  ^
12:06:03 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
12:06:03 import omero.grid.RawAccessRequest;
12:06:03                  ^
12:06:03 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
12:06:03 import omero.model.ImportJob;
12:06:03                   ^
12:06:03 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
12:06:03 import omero.model.ImportJobI;
12:06:03                   ^
12:06:04 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated
12:06:04         IObject link = (IObject) linkClass.newInstance();
12:06:04                                           ^
12:06:04   where T is a type-variable:
12:06:04     T extends Object declared in class Class
12:06:04 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
12:06:04         T copy = (T) obj.getClass().newInstance();
12:06:04                                    ^
12:06:04   where T is a type-variable:
12:06:04     T extends Object declared in class Class
12:06:04 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
12:06:04         RawAccessRequest raw = new RawAccessRequest();
12:06:04         ^
12:06:04 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
12:06:04         RawAccessRequest raw = new RawAccessRequest();
12:06:04                                    ^
12:06:04 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
12:06:04         raw.repoUuid = legacy.root().getHash().getValue();
12:06:04            ^
12:06:04 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
12:06:04         raw.command = "rm";
12:06:04            ^
12:06:04 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
12:06:04         raw.args = Arrays.asList(path);
12:06:04            ^
12:06:04 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
12:06:04         final IObject link = linkClass.newInstance();
12:06:04                                       ^
12:06:04   where T is a type-variable:
12:06:04     T extends Object declared in class Class
12:06:04 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
12:06:04             originalLink.setChild(annotationClass.newInstance());
12:06:04                                                  ^
12:06:04   where T is a type-variable:
12:06:04     T extends Object declared in class Class
12:06:05 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
12:06:05         RoiResult r = svc.findByImage(id, new RoiOptions());
12:06:05                          ^
12:06:05 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
12:06:05         final RawAccessRequest request = new RawAccessRequest();
12:06:05               ^
12:06:05 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
12:06:05         final RawAccessRequest request = new RawAccessRequest();
12:06:05                                              ^
12:06:05 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
12:06:05         request.repoUuid = repo.root().getHash().getValue();
12:06:05                ^
12:06:05 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
12:06:05         request.command = "exists";
12:06:05                ^
12:06:05 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
12:06:05         request.args = Collections.singletonList(dirPath);
12:06:05                ^
12:06:05 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
12:06:05         final RawAccessRequest request = new RawAccessRequest();
12:06:05               ^
12:06:05 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
12:06:05         final RawAccessRequest request = new RawAccessRequest();
12:06:05                                              ^
12:06:05 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
12:06:05         request.repoUuid = repo.root().getHash().getValue();
12:06:05                ^
12:06:05 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
12:06:05         request.command = "exists";
12:06:05                ^
12:06:05 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
12:06:05         request.args = Collections.singletonList(dirName);
12:06:05                ^
12:06:05 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
12:06:05         final ImportJob importJob = new ImportJobI();
12:06:05               ^
12:06:05 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
12:06:05         final ImportJob importJob = new ImportJobI();
12:06:05                                         ^
12:06:05 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
12:06:05         importJob.setImageName(omero.rtypes.rstring(name));
12:06:05                  ^
12:06:05 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
12:06:05         importJob.setImageDescription(omero.rtypes.rstring(desc));
12:06:05                  ^
12:06:05 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
12:06:05         ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
12:06:05         ^
12:06:05 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
12:06:05         ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
12:06:05                           ^
12:06:05 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
12:06:05         final String savedName = sent.getImageName().getValue().toString();
12:06:05                                      ^
12:06:05 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
12:06:05         final String savedDesc = sent.getImageDescription().getValue().toString();
12:06:05                                      ^
12:06:05 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
12:06:05         final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
12:06:05               ^
12:06:05 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
12:06:05         final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
12:06:05                                               ^
12:06:05 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
12:06:05         final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
12:06:05                                                        ^
12:06:05 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
12:06:05         final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
12:06:05                                                        ^
12:06:06 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
12:06:06         RoiResult r = svc.findByImage(image.getId().getValue(),
12:06:06                          ^
12:06:06 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
12:06:06         List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
12:06:06                                 ^
12:06:06 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
12:06:06         l = svc.getRoiMeasurements(image.getId().getValue(), options);
12:06:06                ^
12:06:06 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
12:06:06         l = svc.getRoiMeasurements(image.getId().getValue(), options);
12:06:06                ^
12:06:06 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
12:06:06         List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
12:06:06                                 ^
12:06:06 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
12:06:06         Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
12:06:06                                          ^
12:06:06 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
12:06:06         List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
12:06:06                                 ^
12:06:06 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
12:06:06         table = svc.getTable(f.getId().getValue());
12:06:06                    ^
12:06:06 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
12:06:06         RoiResult r = svc.findByImage(image.getId().getValue(),
12:06:06                          ^
12:06:06 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
12:06:06         r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
12:06:06                ^
12:06:06 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
12:06:06         r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
12:06:06                ^
12:06:06 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
12:06:06         r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
12:06:06                ^
12:06:06 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
12:06:06         r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
12:06:06                ^
12:06:06 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
12:06:06             null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
12:06:06                   ^
12:06:06 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
12:06:06             null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
12:06:06                                   ^
12:06:06 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
12:06:06             new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
12:06:06                                    ^
12:06:06 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
12:06:06             new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
12:06:06                                                    ^
12:06:06 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Long(long) in Long has been deprecated and marked for removal
12:06:06             Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
12:06:06                                       ^
12:06:06 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
12:06:06             Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
12:06:06                                                        ^
12:06:06 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
12:06:06             Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
12:06:06                                                                        ^
12:06:06 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
12:06:06         inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
12:06:06                                        ^
12:06:06 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
12:06:06         inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
12:06:06                                                         ^
12:06:06 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
12:06:06         inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
12:06:06                                        ^
12:06:06 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
12:06:06         inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
12:06:06                                                        ^
12:06:06 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
12:06:06         inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
12:06:06                                        ^
12:06:06 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
12:06:06         inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
12:06:06                                                        ^
12:06:06 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
12:06:06         inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
12:06:06                                        ^
12:06:06 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
12:06:06         inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
12:06:06                                                        ^
12:06:06 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
12:06:06         inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
12:06:06                                        ^
12:06:06 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
12:06:06         inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
12:06:06                                                        ^
12:06:06 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
12:06:06                 svc.getShapeStatsRestricted(
12:06:06                    ^
12:06:06 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
12:06:06         final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
12:06:06                                        ^
12:06:06 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
12:06:06         projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
12:06:06                                      ^
12:06:06 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
12:06:06         request.typesToIgnore = Collections.singletonList("TagAnnotation");
12:06:06                ^
12:06:06 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
12:06:06         request.typesToIgnore = Collections.singletonList("IAnnotationLink");
12:06:06                ^
12:06:06 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
12:06:06         request.typesToIgnore = Collections.singletonList("Annotation");
12:06:06                ^
12:06:06 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
12:06:06                     request.typesToIgnore = Collections.singletonList("Annotation");
12:06:06                            ^
12:06:06 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
12:06:06         projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
12:06:06                                      ^
12:06:06 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
12:06:06         p2.setRelatedTo(p1);
12:06:06           ^
12:06:06 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
12:06:06         Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
12:06:06                                           ^
12:06:06 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
12:06:06         pixels1.setRelatedTo(pixels2);
12:06:06                ^
12:06:06 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
12:06:06         Pixels pixels = pixels1.getRelatedTo();
12:06:06                                ^
12:06:06 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
12:06:06         Assert.assertNull(pixels1.getRelatedTo());
12:06:06                                  ^
12:06:06 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
12:06:06         pixels1.setRelatedTo(pixels2);
12:06:06                ^
12:06:06 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
12:06:06         Pixels pixels = pixels1.getRelatedTo();
12:06:06                                ^
12:06:06 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
12:06:06         Assert.assertNull(pixels1.getRelatedTo());
12:06:06                                  ^
12:06:06 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
12:06:06         List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
12:06:06                                 ^
12:06:06 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
12:06:06         l = svc.getRoiMeasurements(image.getId().getValue(), options);
12:06:06                ^
12:06:06 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
12:06:06         List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
12:06:06                                 ^
12:06:06 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
12:06:06         l = svc.getRoiMeasurements(image.getId().getValue(), options);
12:06:06                ^
12:06:07 Note: Some input files use unchecked or unsafe operations.
12:06:07 Note: Recompile with -Xlint:unchecked for details.
12:06:07 91 warnings
12:06:07 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_2092631699.tmp
12:06:07 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar
12:06:07 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
12:06:07 :: delivering :: omero#OmeroJava-test;working@4590dbd6a4a0 :: 5.6.3-623-e0180adcad-ice36-b25 :: integration :: Wed Jul 29 12:05:50 UTC 2026
12:06:07 	delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml
12:06:07 :: publishing :: omero#OmeroJava-test
12:06:07 	published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-623-e0180adcad-ice36-b25.jar
12:06:07 	published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-623-e0180adcad-ice36-b25.xml
12:06:08 
12:06:08 build-eclipse:
12:06:08 No sub-builds to iterate on
12:06:08 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
12:06:09 
12:06:09 retrieve:
12:06:09 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
12:06:09 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
12:06:13 
12:06:13 prepare:
12:06:13 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
12:06:17 
12:06:17 release-clients:
12:06:17 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-623-e0180adcad-ice36-b25.zip
12:06:23 
12:06:23 release-zip:
12:06:23 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-623-e0180adcad-ice36-b25.zip
12:06:35 
12:06:35 BUILD SUCCESSFUL
12:06:35 Total time: 3 minutes 15 seconds
12:06:35 ++ '[' -d .git ']'
12:06:35 ++ python3 ./build.py release-src
12:06:35 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
12:06:36 
12:06:36 release-src-git:
12:06:36 Releasing openmicroscopy-5.6.3-623-e0180adcad-ice36-b25
12:06:37   - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-623-e0180adcad-ice36-b25.zip
12:06:37   - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-623-e0180adcad-ice36-b25-base.zip
12:06:39 
12:06:39 BUILD SUCCESSFUL
12:06:39 Total time: 3 seconds
12:06:39 ++ echo BUILD_NUMBER=25
12:06:39 ++ echo OMERO_BRANCH=merge_ci
12:06:39 ++ git_info
12:06:39 +++ git rev-parse HEAD
12:06:39 ++ HEAD=e0180adcad5483fdffd6be4f17eff77fc3d58c30
12:06:39 ++ git log --max-count=1 e0180adcad5483fdffd6be4f17eff77fc3d58c30
12:06:39 ++ env
12:06:39 ++ sort
12:06:39 Archiving artifacts
12:06:55 Finished: SUCCESS