12:57:41Started by upstream project "Trigger" build number 3612:57:41originally caused by:
12:57:41 Started by user devspace12:57:41Running as SYSTEM
12:57:41Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
12:57:41The recommended git tool is: NONE
12:57:41No credentials specified
12:57:41 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10
12:57:41Fetching changes from the remote Git repository
12:57:41 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
12:57:42Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git12:57:42 > git --version # timeout=10
12:57:42 > git --version # 'git version 2.52.0'
12:57:42 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
12:57:43 > git rev-parse origin/merge_ci^{commit} # timeout=10
12:57:43Checking out Revision fbd2e29eae13d869964af9bdde0b2e7e9df7d503 (origin/merge_ci)
12:57:43 > git config core.sparsecheckout # timeout=10
12:57:43 > git checkout -f fbd2e29eae13d869964af9bdde0b2e7e9df7d503 # timeout=10
12:57:44Commit message: "Add version.properties to etc/omero.properties"
12:57:44 > git rev-list --no-walk e0180adcad5483fdffd6be4f17eff77fc3d58c30 # timeout=10
12:57:44Cleaning workspace
12:57:44 > git rev-parse --verify HEAD # timeout=10
12:57:44Resetting working tree
12:57:44 > git reset --hard # timeout=10
12:57:44 > git clean -fdx # timeout=10
12:58:01Copied 6 artifacts from "OMERO-python-superbuild-build" build number 2212:58:02[OMERO-build] $ /bin/bash -xe /tmp/jenkins656724560008461727.sh
12:58:02+ mv omero-scripts/dist/omero_scripts-5.10.1.dev0.tar.gz .
12:58:02+ cd src
12:58:02+ export OMERO_BRANCH=merge_ci
12:58:02+ OMERO_BRANCH=merge_ci
12:58:02+ OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
12:58:02+ rm -rf /home/omero/workspace/OMERO-build/omero-virtualenv
12:58:17+ source /home/omero/settings.env
12:58:17++ OMERO_DB_HOST=pg
12:58:17++ OMERO_DB_USER=postgres
12:58:17++ OMERO_DB_PASS=
12:58:17++ OMERO_ROOT_PASS=omero
12:58:17++ OMERO_DATA_DIR=/OMERO
12:58:17++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
12:58:17+ python3.11 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
12:58:36+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl12:58:37Collecting zeroc-ice==3.6.5
12:58:37 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
12:58:40 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 11.7 MB/s eta 0:00:00
12:58:40Installing collected packages: zeroc-ice
12:58:43Successfully installed zeroc-ice-3.6.5
12:58:4312:58:43[notice] A new release of pip available: 22.3.1 -> 26.1.2
12:58:43[notice] To update, run: python3.11 -m pip install --upgrade pip
12:58:43+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U 'setuptools<66' omero-py
12:58:44Requirement already satisfied: setuptools<66 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (65.5.1)
12:58:45Collecting setuptools<66
12:58:45 Using cached setuptools-65.7.0-py3-none-any.whl (1.2 MB)
12:58:45Collecting omero-py
12:58:45 Using cached omero_py-5.22.1-py3-none-any.whl (2.8 MB)
12:58:45Collecting appdirs
12:58:45 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
12:58:45Collecting future
12:58:45 Using cached future-1.0.0-py3-none-any.whl (491 kB)
12:58:46Collecting numpy<3,>=2
12:58:46 Using cached numpy-2.4.6-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB)
12:58:46Collecting Pillow>=10.0.0
12:58:46 Using cached pillow-12.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (6.9 MB)
12:58:46Collecting PyYAML
12:58:46 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB)
12:58:46Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (from omero-py) (3.6.5)
12:58:47Collecting requests
12:58:47 Using cached requests-2.34.2-py3-none-any.whl (73 kB)
12:58:47Collecting portalocker
12:58:47 Using cached portalocker-3.2.0-py3-none-any.whl (22 kB)
12:58:47Collecting charset_normalizer<4,>=2
12:58:47 Using cached charset_normalizer-3.4.9-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (221 kB)
12:58:47Collecting idna<4,>=2.5
12:58:47 Using cached idna-3.18-py3-none-any.whl (65 kB)
12:58:47Collecting urllib3<3,>=1.26
12:58:47 Using cached urllib3-2.7.0-py3-none-any.whl (131 kB)
12:58:47Collecting certifi>=2023.5.7
12:58:47 Using cached certifi-2026.7.22-py3-none-any.whl (136 kB)
12:58:47Installing collected packages: appdirs, urllib3, setuptools, PyYAML, portalocker, Pillow, numpy, idna, future, charset_normalizer, certifi, requests, omero-py
12:58:48 Attempting uninstall: setuptools
12:58:48 Found existing installation: setuptools 65.5.1
12:58:49 Uninstalling setuptools-65.5.1:
12:58:49 Successfully uninstalled setuptools-65.5.1
12:59:36Successfully installed Pillow-12.3.0 PyYAML-6.0.3 appdirs-1.4.4 certifi-2026.7.22 charset_normalizer-3.4.9 future-1.0.0 idna-3.18 numpy-2.4.6 omero-py-5.22.1 portalocker-3.2.0 requests-2.34.2 setuptools-65.7.0 urllib3-2.7.0
12:59:3612:59:36[notice] A new release of pip available: 22.3.1 -> 26.1.2
12:59:36[notice] To update, run: python3.11 -m pip install --upgrade pip
12:59:37+ source /home/omero/workspace/OMERO-build/omero-virtualenv/bin/activate
12:59:37++ deactivate nondestructive
12:59:37++ '[' -n '' ']'
12:59:37++ '[' -n '' ']'
12:59:37++ hash -r
12:59:37++ '[' -n '' ']'
12:59:37++ unset VIRTUAL_ENV
12:59:37++ unset VIRTUAL_ENV_PROMPT
12:59:37++ '[' '!' nondestructive = nondestructive ']'
12:59:37++ VIRTUAL_ENV=/home/omero/workspace/OMERO-build/omero-virtualenv
12:59:37++ export VIRTUAL_ENV
12:59:37++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
12:59:37++ PATH=/home/omero/workspace/OMERO-build/omero-virtualenv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
12:59:37++ export PATH
12:59:37++ '[' -n '' ']'
12:59:37++ '[' -z '' ']'
12:59:37++ _OLD_VIRTUAL_PS1=
12:59:37++ PS1='(omero-virtualenv) '
12:59:37++ export PS1
12:59:37++ VIRTUAL_ENV_PROMPT='(omero-virtualenv) '
12:59:37++ export VIRTUAL_ENV_PROMPT
12:59:37++ hash -r
12:59:37+ source docs/hudson/OMERO.sh
12:59:37++ set -e
12:59:37++ set -u
12:59:37++ set -x
12:59:37++ source docs/hudson/functions.sh
12:59:37++ echo Building merge_ci
12:59:37Building merge_ci
12:59:37++ python3 ./build.py build-dev release-all
12:59:37Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
12:59:3812:59:38check-ivy:
12:59:38Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
12:59:38Created dir: /home/omero/workspace/OMERO-build/src/target
12:59:38:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
12:59:38:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
12:59:3912:59:39build-scons:
12:59:39Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
12:59:41No sub-builds to iterate on
12:59:41Entering /home/omero/workspace/OMERO-build/src/components/tools...
12:59:4212:59:42buildlist:
12:59:42:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
12:59:42:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
12:59:4212:59:42clean:
12:59:42Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
12:59:42Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
12:59:4312:59:43python-clean:
12:59:43WARNING: '' not a valid package name; please use only .-separated package names in setup.py
12:59:43/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-623-fbd2e29eae-ice36-b26') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
12:59:43 warnings.warn(
12:59:43running clean
12:59:43Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
12:59:43Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
12:59:4412:59:44python-clean:
12:59:44WARNING: '' not a valid package name; please use only .-separated package names in setup.py
12:59:44/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-623-fbd2e29eae-ice36-b26') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
12:59:44 warnings.warn(
12:59:44running clean
12:59:44Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
12:59:44Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
12:59:45Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
12:59:45Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
12:59:4512:59:45python-clean:
12:59:45WARNING: '' not a valid package name; please use only .-separated package names in setup.py
12:59:45/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-623-fbd2e29eae-ice36-b26') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
12:59:45 warnings.warn(
12:59:45running clean
12:59:45Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
12:59:45Deleting directory /home/omero/workspace/OMERO-build/src/target
12:59:4612:59:46build-scons:
12:59:46Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
12:59:4812:59:48build:
12:59:48No sub-builds to iterate on
12:59:48Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
12:59:48Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
12:59:49Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
12:59:49Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
12:59:4912:59:49tools-init:
12:59:49no-op
12:59:4912:59:49retrieve:
12:59:49:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
12:59:49:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
13:00:3813:00:38prepare:
13:00:38Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
13:00:38Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
13:00:38Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
13:00:38Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
13:00:38Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
13:00:38Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
13:00:38Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
13:00:38Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
13:00:38Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
13:00:38Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
13:00:38Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
13:00:38Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
13:00:38Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
13:00:38Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
13:00:38Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
13:00:3813:00:38pre-compile:
13:00:38Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
13:00:39Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
13:00:46Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
13:00:51Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
13:00:52Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
13:00:5413:00:54compile:
13:00:54no-op
13:00:5413:00:54package:
13:00:54Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
13:00:5813:00:58install:
13:00:58:: delivering :: omero#omero_client;working@4590dbd6a4a0 :: 5.6.3-623-fbd2e29eae-ice36-b26 :: integration :: Wed Jul 29 12:59:49 UTC 2026
13:00:58 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
13:00:58:: publishing :: omero#omero_client
13:00:58 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-623-fbd2e29eae-ice36-b26/omero_client-5.6.3-623-fbd2e29eae-ice36-b26.jar
13:00:58 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-623-fbd2e29eae-ice36-b26/omero_client-5.6.3-623-fbd2e29eae-ice36-b26.xml
13:00:59Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
13:00:59Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
13:00:5913:00:59retrieve:
13:00:59:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
13:00:59:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
13:01:00Entering /home/omero/workspace/OMERO-build/src/components/tools...
13:01:0013:01:00dist:
13:01:00Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
13:01:00Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
13:01:00Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
13:01:00Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.10.1.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
13:01:01Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
13:01:01Copying 29 files to /home/omero/workspace/OMERO-build/src/dist
13:01:02Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
13:01:02Entering /home/omero/workspace/OMERO-build/src/components/tests...
13:01:03Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
13:01:0413:01:04copy-licenses:
13:01:04Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
13:01:04Created dir: /home/omero/workspace/OMERO-build/src/dist/share
13:01:04Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
13:01:0413:01:04copy-history:
13:01:04Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
13:01:0413:01:04copy-etc:
13:01:04Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
13:01:05Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
13:01:0513:01:05copy-sql:
13:01:05Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
13:01:1613:01:16copy-server:
13:01:16 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.1.9 won
13:01:2113:01:21copy-client:
13:01:21Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
13:01:25 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.1.9 won
13:01:3013:01:30update-version:
13:01:30Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
13:01:3013:01:30create-workdirs:
13:01:30Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
13:01:30Created dir: /home/omero/workspace/OMERO-build/src/dist/var
13:01:30Created dir: /home/omero/workspace/OMERO-build/src/dist/var/tmp
13:01:3013:01:30copy-luts:
13:01:30Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
13:01:30Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
13:01:3013:01:30test-compile:
13:01:30:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
13:01:31Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
13:01:31Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
13:01:31Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
13:01:31Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
13:01:32Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
13:01:33Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
13:01:34Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
13:01:3413:01:34testng-init:
13:01:34:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
13:01:34:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
13:01:4313:01:43,234 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.16
13:01:4313:01:43,237 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6aa09c35 - No custom configurators were discovered as a service.
13:01:4313:01:43,237 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6aa09c35 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
13:01:4313:01:43,241 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6aa09c35 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
13:01:4313:01:43,244 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
13:01:4313:01:43,246 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
13:01:4313:01:43,247 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6aa09c35 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 6 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
13:01:4313:01:43,247 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6aa09c35 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
13:01:4313:01:43,249 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6aa09c35 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
13:01:4313:01:43,252 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
13:01:4313:01:43,254 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
13:01:4313:01:43,255 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@22457838 - Resource [logback.xml] occurs multiple times on the classpath.
13:01:4313:01:43,255 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@22457838 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
13:01:4313:01:43,255 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@22457838 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
13:01:4313:01:43,506 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
13:01:4313:01:43,506 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
13:01:4313:01:43,529 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
13:01:4313:01:43,531 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@7a9794bd - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
13:01:4313:01:43,531 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@7a9794bd - Please move "immediateFlush" property into the enclosing appender.
13:01:4313:01:43,605 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@7a9794bd - Setting the "immediateFlush" property of the enclosing appender to true
13:01:4313:01:43,606 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
13:01:4313:01:43,606 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
13:01:4313:01:43,606 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
13:01:4313:01:43,606 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
13:01:4313:01:43,606 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
13:01:4313:01:43,606 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
13:01:4313:01:43,608 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@297727ab - End of configuration.
13:01:4313:01:43,610 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@47585784 - Registering current configuration as safe fallback point
13:01:4313:01:43,610 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6aa09c35 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 361 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
13:01:4313:01:43lifecycle.test-compile:
13:01:43Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
13:01:43Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
13:01:44warning: [options] bootstrap class path not set in conjunction with -source 8
13:01:44warning: [options] source value 8 is obsolete and will be removed in a future release
13:01:44warning: [options] target value 8 is obsolete and will be removed in a future release
13:01:44warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
13:01:46/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
13:01:46import omero.grid.RawAccessRequest;
13:01:46 ^
13:01:46/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
13:01:46import omero.grid.RawAccessRequest;
13:01:46 ^
13:01:46/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
13:01:46import omero.grid.RawAccessRequest;
13:01:46 ^
13:01:46/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
13:01:46import omero.model.ImportJob;
13:01:46 ^
13:01:46/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
13:01:46import omero.model.ImportJobI;
13:01:46 ^
13:01:47/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated
13:01:47 IObject link = (IObject) linkClass.newInstance();
13:01:47 ^
13:01:47 where T is a type-variable:
13:01:47 T extends Object declared in class Class
13:01:47/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
13:01:47 T copy = (T) obj.getClass().newInstance();
13:01:47 ^
13:01:47 where T is a type-variable:
13:01:47 T extends Object declared in class Class
13:01:47/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
13:01:47 RawAccessRequest raw = new RawAccessRequest();
13:01:47 ^
13:01:47/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
13:01:47 RawAccessRequest raw = new RawAccessRequest();
13:01:47 ^
13:01:47/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
13:01:47 raw.repoUuid = legacy.root().getHash().getValue();
13:01:47 ^
13:01:47/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
13:01:47 raw.command = "rm";
13:01:47 ^
13:01:47/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
13:01:47 raw.args = Arrays.asList(path);
13:01:47 ^
13:01:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
13:01:48 final IObject link = linkClass.newInstance();
13:01:48 ^
13:01:48 where T is a type-variable:
13:01:48 T extends Object declared in class Class
13:01:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
13:01:48 originalLink.setChild(annotationClass.newInstance());
13:01:48 ^
13:01:48 where T is a type-variable:
13:01:48 T extends Object declared in class Class
13:01:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
13:01:48 RoiResult r = svc.findByImage(id, new RoiOptions());
13:01:48 ^
13:01:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
13:01:48 final RawAccessRequest request = new RawAccessRequest();
13:01:48 ^
13:01:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
13:01:48 final RawAccessRequest request = new RawAccessRequest();
13:01:48 ^
13:01:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
13:01:48 request.repoUuid = repo.root().getHash().getValue();
13:01:48 ^
13:01:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
13:01:48 request.command = "exists";
13:01:48 ^
13:01:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
13:01:48 request.args = Collections.singletonList(dirPath);
13:01:48 ^
13:01:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
13:01:48 final RawAccessRequest request = new RawAccessRequest();
13:01:48 ^
13:01:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
13:01:48 final RawAccessRequest request = new RawAccessRequest();
13:01:48 ^
13:01:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
13:01:48 request.repoUuid = repo.root().getHash().getValue();
13:01:48 ^
13:01:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
13:01:48 request.command = "exists";
13:01:48 ^
13:01:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
13:01:48 request.args = Collections.singletonList(dirName);
13:01:48 ^
13:01:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
13:01:49 final ImportJob importJob = new ImportJobI();
13:01:49 ^
13:01:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
13:01:49 final ImportJob importJob = new ImportJobI();
13:01:49 ^
13:01:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
13:01:49 importJob.setImageName(omero.rtypes.rstring(name));
13:01:49 ^
13:01:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
13:01:49 importJob.setImageDescription(omero.rtypes.rstring(desc));
13:01:49 ^
13:01:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
13:01:49 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
13:01:49 ^
13:01:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
13:01:49 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
13:01:49 ^
13:01:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
13:01:49 final String savedName = sent.getImageName().getValue().toString();
13:01:49 ^
13:01:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
13:01:49 final String savedDesc = sent.getImageDescription().getValue().toString();
13:01:49 ^
13:01:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
13:01:49 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
13:01:49 ^
13:01:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
13:01:49 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
13:01:49 ^
13:01:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
13:01:49 final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
13:01:49 ^
13:01:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
13:01:49 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
13:01:49 ^
13:01:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
13:01:49 RoiResult r = svc.findByImage(image.getId().getValue(),
13:01:49 ^
13:01:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
13:01:49 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
13:01:49 ^
13:01:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
13:01:49 l = svc.getRoiMeasurements(image.getId().getValue(), options);
13:01:49 ^
13:01:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
13:01:49 l = svc.getRoiMeasurements(image.getId().getValue(), options);
13:01:49 ^
13:01:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
13:01:49 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
13:01:49 ^
13:01:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
13:01:49 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
13:01:49 ^
13:01:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
13:01:49 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
13:01:49 ^
13:01:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
13:01:49 table = svc.getTable(f.getId().getValue());
13:01:49 ^
13:01:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
13:01:49 RoiResult r = svc.findByImage(image.getId().getValue(),
13:01:49 ^
13:01:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
13:01:49 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
13:01:49 ^
13:01:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
13:01:49 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
13:01:49 ^
13:01:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
13:01:49 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
13:01:49 ^
13:01:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
13:01:49 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
13:01:49 ^
13:01:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
13:01:49 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
13:01:49 ^
13:01:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
13:01:49 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
13:01:49 ^
13:01:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
13:01:49 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
13:01:49 ^
13:01:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
13:01:49 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
13:01:49 ^
13:01:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Long(long) in Long has been deprecated and marked for removal
13:01:49 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
13:01:49 ^
13:01:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
13:01:49 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
13:01:49 ^
13:01:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
13:01:49 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
13:01:49 ^
13:01:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
13:01:49 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
13:01:49 ^
13:01:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
13:01:49 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
13:01:49 ^
13:01:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
13:01:49 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
13:01:49 ^
13:01:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
13:01:49 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
13:01:49 ^
13:01:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
13:01:49 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
13:01:49 ^
13:01:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
13:01:49 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
13:01:49 ^
13:01:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
13:01:49 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
13:01:49 ^
13:01:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
13:01:49 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
13:01:49 ^
13:01:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
13:01:49 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
13:01:49 ^
13:01:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
13:01:49 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
13:01:49 ^
13:01:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
13:01:49 svc.getShapeStatsRestricted(
13:01:49 ^
13:01:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
13:01:49 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
13:01:49 ^
13:01:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
13:01:49 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
13:01:49 ^
13:01:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
13:01:50 request.typesToIgnore = Collections.singletonList("TagAnnotation");
13:01:50 ^
13:01:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
13:01:50 request.typesToIgnore = Collections.singletonList("IAnnotationLink");
13:01:50 ^
13:01:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
13:01:50 request.typesToIgnore = Collections.singletonList("Annotation");
13:01:50 ^
13:01:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
13:01:50 request.typesToIgnore = Collections.singletonList("Annotation");
13:01:50 ^
13:01:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
13:01:50 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
13:01:50 ^
13:01:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
13:01:50 p2.setRelatedTo(p1);
13:01:50 ^
13:01:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
13:01:50 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
13:01:50 ^
13:01:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
13:01:50 pixels1.setRelatedTo(pixels2);
13:01:50 ^
13:01:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
13:01:50 Pixels pixels = pixels1.getRelatedTo();
13:01:50 ^
13:01:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
13:01:50 Assert.assertNull(pixels1.getRelatedTo());
13:01:50 ^
13:01:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
13:01:50 pixels1.setRelatedTo(pixels2);
13:01:50 ^
13:01:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
13:01:50 Pixels pixels = pixels1.getRelatedTo();
13:01:50 ^
13:01:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
13:01:50 Assert.assertNull(pixels1.getRelatedTo());
13:01:50 ^
13:01:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
13:01:50 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
13:01:50 ^
13:01:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
13:01:50 l = svc.getRoiMeasurements(image.getId().getValue(), options);
13:01:50 ^
13:01:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
13:01:50 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
13:01:50 ^
13:01:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
13:01:50 l = svc.getRoiMeasurements(image.getId().getValue(), options);
13:01:50 ^
13:01:50Note: Some input files use unchecked or unsafe operations.
13:01:50Note: Recompile with -Xlint:unchecked for details.
13:01:5091 warnings
13:01:50Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_486849459.tmp
13:01:50Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar
13:01:51:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
13:01:51:: delivering :: omero#OmeroJava-test;working@4590dbd6a4a0 :: 5.6.3-623-fbd2e29eae-ice36-b26 :: integration :: Wed Jul 29 13:01:33 UTC 2026
13:01:51 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml
13:01:51:: publishing :: omero#OmeroJava-test
13:01:51 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-623-fbd2e29eae-ice36-b26.jar
13:01:51 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-623-fbd2e29eae-ice36-b26.xml
13:01:5113:01:51build-eclipse:
13:01:51No sub-builds to iterate on
13:01:51Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
13:01:5113:01:51retrieve:
13:01:51:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
13:01:51:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
13:01:5613:01:56prepare:
13:01:56Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
13:03:4513:03:45release-clients:
13:03:45Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-623-fbd2e29eae-ice36-b26.zip
13:03:4813:03:48release-zip:
13:03:48Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26.zip
13:04:0013:04:00BUILD SUCCESSFUL
13:04:00Total time: 4 minutes 23 seconds
13:04:00++ '[' -d .git ']'
13:04:00++ python3 ./build.py release-src
13:04:00Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
13:04:0113:04:01release-src-git:
13:04:01Releasing openmicroscopy-5.6.3-623-fbd2e29eae-ice36-b26
13:04:03 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-623-fbd2e29eae-ice36-b26.zip
13:04:03 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-623-fbd2e29eae-ice36-b26-base.zip
13:04:0413:04:04BUILD SUCCESSFUL
13:04:04Total time: 4 seconds
13:04:04++ echo BUILD_NUMBER=26
13:04:04++ echo OMERO_BRANCH=merge_ci
13:04:04++ git_info
13:04:04+++ git rev-parse HEAD
13:04:04++ HEAD=fbd2e29eae13d869964af9bdde0b2e7e9df7d503
13:04:04++ git log --max-count=1 fbd2e29eae13d869964af9bdde0b2e7e9df7d503
13:04:04++ env
13:04:04++ sort
13:04:04Archiving artifacts
13:04:21Finished: SUCCESS
