11:55:11Started by upstream project "Trigger" build number 4011:55:11originally caused by:
11:55:11 Started by user devspace11:55:11Running as SYSTEM
11:55:11Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
11:55:11The recommended git tool is: NONE
11:55:11No credentials specified
11:55:11 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10
11:55:11Fetching changes from the remote Git repository
11:55:11 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
11:55:11Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git11:55:11 > git --version # timeout=10
11:55:11 > git --version # 'git version 2.52.0'
11:55:11 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
11:55:16 > git rev-parse origin/merge_ci^{commit} # timeout=10
11:55:16Checking out Revision 6b3a800bcba4f892b1229eb8d477e595c95d7aa5 (origin/merge_ci)
11:55:16 > git config core.sparsecheckout # timeout=10
11:55:16 > git checkout -f 6b3a800bcba4f892b1229eb8d477e595c95d7aa5 # timeout=10
11:55:29Commit message: "Add version.properties to etc/omero.properties"
11:55:29 > git rev-list --no-walk f8e321e05513b563fe3a020cc6c21f6e22b2e0cc # timeout=10
11:55:30Cleaning workspace
11:55:30 > git rev-parse --verify HEAD # timeout=10
11:55:30Resetting working tree
11:55:30 > git reset --hard # timeout=10
11:55:30 > git clean -fdx # timeout=10
11:55:57Copied 6 artifacts from "OMERO-python-superbuild-build" build number 2511:55:58[OMERO-build] $ /bin/bash -xe /tmp/jenkins371234689474910374.sh
11:55:58+ mv omero-scripts/dist/omero_scripts-5.10.1.dev0.tar.gz .
11:55:58+ cd src
11:55:58+ export OMERO_BRANCH=merge_ci
11:55:58+ OMERO_BRANCH=merge_ci
11:55:58+ OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
11:55:58+ rm -rf /home/omero/workspace/OMERO-build/omero-virtualenv
11:56:22+ source /home/omero/settings.env
11:56:22++ OMERO_DB_HOST=pg
11:56:22++ OMERO_DB_USER=postgres
11:56:22++ OMERO_DB_PASS=
11:56:22++ OMERO_ROOT_PASS=omero
11:56:22++ OMERO_DATA_DIR=/OMERO
11:56:22++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
11:56:22+ python3.11 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
11:56:40+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl11:56:41Collecting zeroc-ice==3.6.5
11:56:41 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
11:56:44 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 11.4 MB/s eta 0:00:00
11:56:44Installing collected packages: zeroc-ice
11:56:48Successfully installed zeroc-ice-3.6.5
11:56:4811:56:48[notice] A new release of pip available: 22.3.1 -> 26.2
11:56:48[notice] To update, run: python3.11 -m pip install --upgrade pip
11:56:48+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U 'setuptools<66' omero-py
11:56:49Requirement already satisfied: setuptools<66 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (65.5.1)
11:56:50Collecting setuptools<66
11:56:50 Using cached setuptools-65.7.0-py3-none-any.whl (1.2 MB)
11:56:50Collecting omero-py
11:56:50 Using cached omero_py-5.23.0-py3-none-any.whl (2.8 MB)
11:56:50Collecting appdirs
11:56:50 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
11:56:50Collecting future
11:56:50 Using cached future-1.0.0-py3-none-any.whl (491 kB)
11:56:51Collecting numpy<3,>=2
11:56:51 Using cached numpy-2.4.6-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB)
11:56:52Collecting Pillow>=10.0.0
11:56:52 Using cached pillow-12.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (6.9 MB)
11:56:52Collecting PyYAML
11:56:52 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB)
11:56:52Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (from omero-py) (3.6.5)
11:56:52Collecting requests
11:56:52 Using cached requests-2.34.2-py3-none-any.whl (73 kB)
11:56:53Collecting portalocker
11:56:53 Downloading portalocker-4.0.0-py3-none-any.whl (33 kB)
11:56:53Collecting charset_normalizer<4,>=2
11:56:53 Using cached charset_normalizer-3.4.9-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (221 kB)
11:56:53Collecting idna<4,>=2.5
11:56:53 Using cached idna-3.18-py3-none-any.whl (65 kB)
11:56:53Collecting urllib3<3,>=1.26
11:56:53 Using cached urllib3-2.7.0-py3-none-any.whl (131 kB)
11:56:53Collecting certifi>=2023.5.7
11:56:54 Using cached certifi-2026.7.22-py3-none-any.whl (136 kB)
11:56:54Installing collected packages: appdirs, urllib3, setuptools, PyYAML, portalocker, Pillow, numpy, idna, future, charset_normalizer, certifi, requests, omero-py
11:56:55 Attempting uninstall: setuptools
11:56:55 Found existing installation: setuptools 65.5.1
11:56:55 Uninstalling setuptools-65.5.1:
11:56:56 Successfully uninstalled setuptools-65.5.1
11:57:45Successfully installed Pillow-12.3.0 PyYAML-6.0.3 appdirs-1.4.4 certifi-2026.7.22 charset_normalizer-3.4.9 future-1.0.0 idna-3.18 numpy-2.4.6 omero-py-5.23.0 portalocker-4.0.0 requests-2.34.2 setuptools-65.7.0 urllib3-2.7.0
11:57:4511:57:45[notice] A new release of pip available: 22.3.1 -> 26.2
11:57:45[notice] To update, run: python3.11 -m pip install --upgrade pip
11:57:45+ source /home/omero/workspace/OMERO-build/omero-virtualenv/bin/activate
11:57:45++ deactivate nondestructive
11:57:45++ '[' -n '' ']'
11:57:45++ '[' -n '' ']'
11:57:45++ hash -r
11:57:45++ '[' -n '' ']'
11:57:45++ unset VIRTUAL_ENV
11:57:45++ unset VIRTUAL_ENV_PROMPT
11:57:45++ '[' '!' nondestructive = nondestructive ']'
11:57:45++ VIRTUAL_ENV=/home/omero/workspace/OMERO-build/omero-virtualenv
11:57:45++ export VIRTUAL_ENV
11:57:45++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
11:57:45++ PATH=/home/omero/workspace/OMERO-build/omero-virtualenv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
11:57:45++ export PATH
11:57:45++ '[' -n '' ']'
11:57:45++ '[' -z '' ']'
11:57:45++ _OLD_VIRTUAL_PS1=
11:57:45++ PS1='(omero-virtualenv) '
11:57:45++ export PS1
11:57:45++ VIRTUAL_ENV_PROMPT='(omero-virtualenv) '
11:57:45++ export VIRTUAL_ENV_PROMPT
11:57:45++ hash -r
11:57:45+ source docs/hudson/OMERO.sh
11:57:45++ set -e
11:57:45++ set -u
11:57:45++ set -x
11:57:45++ source docs/hudson/functions.sh
11:57:45++ echo Building merge_ci
11:57:45Building merge_ci
11:57:45++ python3 ./build.py build-dev release-all
11:57:45Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
11:57:4611:57:46check-ivy:
11:57:46Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
11:57:46Created dir: /home/omero/workspace/OMERO-build/src/target
11:57:46:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
11:57:46:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
11:57:4811:57:48build-scons:
11:57:48Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
11:57:49No sub-builds to iterate on
11:57:50Entering /home/omero/workspace/OMERO-build/src/components/tools...
11:57:5011:57:50buildlist:
11:57:50:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
11:57:50:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
11:57:5011:57:50clean:
11:57:50Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
11:57:51Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
11:57:5111:57:51python-clean:
11:57:51WARNING: '' not a valid package name; please use only .-separated package names in setup.py
11:57:51/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-622-6b3a800bcb-ice36-b29') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
11:57:51 warnings.warn(
11:57:51running clean
11:57:52Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
11:57:52Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
11:57:5211:57:52python-clean:
11:57:52WARNING: '' not a valid package name; please use only .-separated package names in setup.py
11:57:52/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-622-6b3a800bcb-ice36-b29') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
11:57:52 warnings.warn(
11:57:52running clean
11:57:52Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
11:57:53Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
11:57:53Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
11:57:53Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
11:57:5411:57:54python-clean:
11:57:54WARNING: '' not a valid package name; please use only .-separated package names in setup.py
11:57:54/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-622-6b3a800bcb-ice36-b29') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
11:57:54 warnings.warn(
11:57:54running clean
11:57:54Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
11:57:54Deleting directory /home/omero/workspace/OMERO-build/src/target
11:57:5511:57:55build-scons:
11:57:55Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
11:57:5611:57:56build:
11:57:56No sub-builds to iterate on
11:57:56Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
11:57:57Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
11:57:57Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
11:57:58Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
11:57:5811:57:58tools-init:
11:57:58no-op
11:57:5811:57:58retrieve:
11:57:58:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
11:57:58:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
11:59:2511:59:25prepare:
11:59:25Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
11:59:25Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
11:59:25Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
11:59:25Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
11:59:25Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
11:59:25Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
11:59:25Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
11:59:25Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
11:59:25Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
11:59:25Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
11:59:25Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
11:59:25Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
11:59:25Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
11:59:25Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
11:59:25Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
11:59:2511:59:25pre-compile:
11:59:25Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
11:59:26Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
11:59:34Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
11:59:38Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
11:59:38Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
11:59:4011:59:40compile:
11:59:40no-op
11:59:4011:59:40package:
11:59:40Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
11:59:4411:59:44install:
11:59:44:: delivering :: omero#omero_client;working@652802b07c29 :: 5.6.3-622-6b3a800bcb-ice36-b29 :: integration :: Sat Aug 01 11:57:57 UTC 2026
11:59:44 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
11:59:44:: publishing :: omero#omero_client
11:59:44 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-622-6b3a800bcb-ice36-b29/omero_client-5.6.3-622-6b3a800bcb-ice36-b29.jar
11:59:44 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-622-6b3a800bcb-ice36-b29/omero_client-5.6.3-622-6b3a800bcb-ice36-b29.xml
11:59:45Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
11:59:45Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
11:59:4511:59:45retrieve:
11:59:45:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
11:59:45:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
11:59:46Entering /home/omero/workspace/OMERO-build/src/components/tools...
11:59:4611:59:46dist:
11:59:46Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
11:59:46Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
11:59:46Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
11:59:46Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.10.1.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
11:59:46Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
11:59:47Copying 29 files to /home/omero/workspace/OMERO-build/src/dist
11:59:47Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
11:59:47Entering /home/omero/workspace/OMERO-build/src/components/tests...
11:59:48Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
11:59:4811:59:48copy-licenses:
11:59:48Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
11:59:48Created dir: /home/omero/workspace/OMERO-build/src/dist/share
11:59:48Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
11:59:4911:59:49copy-history:
11:59:49Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
11:59:4911:59:49copy-etc:
11:59:49Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
11:59:49Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
11:59:4911:59:49copy-sql:
11:59:49Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
12:00:0212:00:02copy-server:
12:00:02 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.1.9 won
12:00:0712:00:07copy-client:
12:00:07Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
12:00:11 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.1.9 won
12:00:1512:00:15update-version:
12:00:15Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
12:00:1512:00:15create-workdirs:
12:00:15Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
12:00:15Created dir: /home/omero/workspace/OMERO-build/src/dist/var
12:00:15Created dir: /home/omero/workspace/OMERO-build/src/dist/var/tmp
12:00:1512:00:15copy-luts:
12:00:15Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
12:00:15Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
12:00:1612:00:16test-compile:
12:00:16:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
12:00:16Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
12:00:17Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
12:00:17Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
12:00:17Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
12:00:17Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
12:00:18Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
12:00:18Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
12:00:1912:00:19testng-init:
12:00:19:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
12:00:19:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
12:00:2712:00:27,147 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.16
12:00:2712:00:27,151 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1492c9d - No custom configurators were discovered as a service.
12:00:2712:00:27,151 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1492c9d - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
12:00:2712:00:27,155 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1492c9d - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
12:00:2712:00:27,159 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
12:00:2712:00:27,162 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
12:00:2712:00:27,162 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1492c9d - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 7 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
12:00:2712:00:27,163 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1492c9d - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
12:00:2712:00:27,165 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1492c9d - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
12:00:2712:00:27,168 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
12:00:2712:00:27,169 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
12:00:2712:00:27,171 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@24df8abf - Resource [logback.xml] occurs multiple times on the classpath.
12:00:2712:00:27,171 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@24df8abf - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
12:00:2712:00:27,171 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@24df8abf - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
12:00:2712:00:27,413 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
12:00:2712:00:27,413 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
12:00:2712:00:27,436 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
12:00:2712:00:27,439 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@390d47db - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
12:00:2712:00:27,439 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@390d47db - Please move "immediateFlush" property into the enclosing appender.
12:00:2712:00:27,514 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@390d47db - Setting the "immediateFlush" property of the enclosing appender to true
12:00:2712:00:27,515 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
12:00:2712:00:27,515 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
12:00:2712:00:27,515 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
12:00:2712:00:27,515 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
12:00:2712:00:27,515 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
12:00:2712:00:27,515 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
12:00:2712:00:27,517 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@6aa09c35 - End of configuration.
12:00:2712:00:27,519 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@22457838 - Registering current configuration as safe fallback point
12:00:2712:00:27,519 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1492c9d - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 354 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
12:00:2712:00:27lifecycle.test-compile:
12:00:27Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
12:00:27Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
12:00:28warning: [options] bootstrap class path not set in conjunction with -source 8
12:00:28warning: [options] source value 8 is obsolete and will be removed in a future release
12:00:28warning: [options] target value 8 is obsolete and will be removed in a future release
12:00:28warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
12:00:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
12:00:29import omero.grid.RawAccessRequest;
12:00:29 ^
12:00:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
12:00:30import omero.grid.RawAccessRequest;
12:00:30 ^
12:00:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
12:00:30import omero.grid.RawAccessRequest;
12:00:30 ^
12:00:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
12:00:30import omero.model.ImportJob;
12:00:30 ^
12:00:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
12:00:30import omero.model.ImportJobI;
12:00:30 ^
12:00:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated
12:00:31 IObject link = (IObject) linkClass.newInstance();
12:00:31 ^
12:00:31 where T is a type-variable:
12:00:31 T extends Object declared in class Class
12:00:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
12:00:31 T copy = (T) obj.getClass().newInstance();
12:00:31 ^
12:00:31 where T is a type-variable:
12:00:31 T extends Object declared in class Class
12:00:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
12:00:31 RawAccessRequest raw = new RawAccessRequest();
12:00:31 ^
12:00:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
12:00:31 RawAccessRequest raw = new RawAccessRequest();
12:00:31 ^
12:00:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
12:00:31 raw.repoUuid = legacy.root().getHash().getValue();
12:00:31 ^
12:00:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
12:00:31 raw.command = "rm";
12:00:31 ^
12:00:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
12:00:31 raw.args = Arrays.asList(path);
12:00:31 ^
12:00:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
12:00:31 final IObject link = linkClass.newInstance();
12:00:31 ^
12:00:31 where T is a type-variable:
12:00:31 T extends Object declared in class Class
12:00:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
12:00:31 originalLink.setChild(annotationClass.newInstance());
12:00:31 ^
12:00:31 where T is a type-variable:
12:00:31 T extends Object declared in class Class
12:00:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
12:00:32 RoiResult r = svc.findByImage(id, new RoiOptions());
12:00:32 ^
12:00:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
12:00:32 final RawAccessRequest request = new RawAccessRequest();
12:00:32 ^
12:00:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
12:00:32 final RawAccessRequest request = new RawAccessRequest();
12:00:32 ^
12:00:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
12:00:32 request.repoUuid = repo.root().getHash().getValue();
12:00:32 ^
12:00:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
12:00:32 request.command = "exists";
12:00:32 ^
12:00:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
12:00:32 request.args = Collections.singletonList(dirPath);
12:00:32 ^
12:00:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
12:00:32 final RawAccessRequest request = new RawAccessRequest();
12:00:32 ^
12:00:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
12:00:32 final RawAccessRequest request = new RawAccessRequest();
12:00:32 ^
12:00:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
12:00:32 request.repoUuid = repo.root().getHash().getValue();
12:00:32 ^
12:00:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
12:00:32 request.command = "exists";
12:00:32 ^
12:00:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
12:00:32 request.args = Collections.singletonList(dirName);
12:00:32 ^
12:00:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
12:00:32 final ImportJob importJob = new ImportJobI();
12:00:32 ^
12:00:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
12:00:32 final ImportJob importJob = new ImportJobI();
12:00:32 ^
12:00:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
12:00:32 importJob.setImageName(omero.rtypes.rstring(name));
12:00:32 ^
12:00:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
12:00:32 importJob.setImageDescription(omero.rtypes.rstring(desc));
12:00:32 ^
12:00:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
12:00:32 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
12:00:32 ^
12:00:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
12:00:32 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
12:00:32 ^
12:00:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
12:00:32 final String savedName = sent.getImageName().getValue().toString();
12:00:32 ^
12:00:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
12:00:32 final String savedDesc = sent.getImageDescription().getValue().toString();
12:00:32 ^
12:00:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
12:00:32 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
12:00:32 ^
12:00:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
12:00:32 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
12:00:32 ^
12:00:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
12:00:32 final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
12:00:32 ^
12:00:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
12:00:32 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
12:00:32 ^
12:00:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
12:00:33 RoiResult r = svc.findByImage(image.getId().getValue(),
12:00:33 ^
12:00:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
12:00:33 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
12:00:33 ^
12:00:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
12:00:33 l = svc.getRoiMeasurements(image.getId().getValue(), options);
12:00:33 ^
12:00:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
12:00:33 l = svc.getRoiMeasurements(image.getId().getValue(), options);
12:00:33 ^
12:00:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
12:00:33 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
12:00:33 ^
12:00:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
12:00:33 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
12:00:33 ^
12:00:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
12:00:33 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
12:00:33 ^
12:00:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
12:00:33 table = svc.getTable(f.getId().getValue());
12:00:33 ^
12:00:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
12:00:33 RoiResult r = svc.findByImage(image.getId().getValue(),
12:00:33 ^
12:00:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
12:00:33 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
12:00:33 ^
12:00:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
12:00:33 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
12:00:33 ^
12:00:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
12:00:33 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
12:00:33 ^
12:00:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
12:00:33 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
12:00:33 ^
12:00:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
12:00:33 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
12:00:33 ^
12:00:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
12:00:33 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
12:00:33 ^
12:00:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
12:00:33 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
12:00:33 ^
12:00:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
12:00:33 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
12:00:33 ^
12:00:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Long(long) in Long has been deprecated and marked for removal
12:00:33 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
12:00:33 ^
12:00:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
12:00:33 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
12:00:33 ^
12:00:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
12:00:33 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
12:00:33 ^
12:00:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
12:00:33 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
12:00:33 ^
12:00:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
12:00:33 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
12:00:33 ^
12:00:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
12:00:33 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
12:00:33 ^
12:00:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
12:00:33 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
12:00:33 ^
12:00:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
12:00:33 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
12:00:33 ^
12:00:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
12:00:33 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
12:00:33 ^
12:00:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
12:00:33 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
12:00:33 ^
12:00:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
12:00:33 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
12:00:33 ^
12:00:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
12:00:33 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
12:00:33 ^
12:00:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
12:00:33 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
12:00:33 ^
12:00:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
12:00:33 svc.getShapeStatsRestricted(
12:00:33 ^
12:00:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
12:00:33 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
12:00:33 ^
12:00:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
12:00:33 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
12:00:33 ^
12:00:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
12:00:33 request.typesToIgnore = Collections.singletonList("TagAnnotation");
12:00:33 ^
12:00:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
12:00:33 request.typesToIgnore = Collections.singletonList("IAnnotationLink");
12:00:33 ^
12:00:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
12:00:33 request.typesToIgnore = Collections.singletonList("Annotation");
12:00:33 ^
12:00:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
12:00:33 request.typesToIgnore = Collections.singletonList("Annotation");
12:00:33 ^
12:00:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
12:00:33 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
12:00:33 ^
12:00:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
12:00:34 p2.setRelatedTo(p1);
12:00:34 ^
12:00:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
12:00:34 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
12:00:34 ^
12:00:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
12:00:34 pixels1.setRelatedTo(pixels2);
12:00:34 ^
12:00:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
12:00:34 Pixels pixels = pixels1.getRelatedTo();
12:00:34 ^
12:00:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
12:00:34 Assert.assertNull(pixels1.getRelatedTo());
12:00:34 ^
12:00:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
12:00:34 pixels1.setRelatedTo(pixels2);
12:00:34 ^
12:00:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
12:00:34 Pixels pixels = pixels1.getRelatedTo();
12:00:34 ^
12:00:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
12:00:34 Assert.assertNull(pixels1.getRelatedTo());
12:00:34 ^
12:00:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
12:00:34 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
12:00:34 ^
12:00:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
12:00:34 l = svc.getRoiMeasurements(image.getId().getValue(), options);
12:00:34 ^
12:00:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
12:00:34 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
12:00:34 ^
12:00:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
12:00:34 l = svc.getRoiMeasurements(image.getId().getValue(), options);
12:00:34 ^
12:00:34Note: Some input files use unchecked or unsafe operations.
12:00:34Note: Recompile with -Xlint:unchecked for details.
12:00:3491 warnings
12:00:34Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_1827372765.tmp
12:00:34Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar
12:00:34:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
12:00:34:: delivering :: omero#OmeroJava-test;working@652802b07c29 :: 5.6.3-622-6b3a800bcb-ice36-b29 :: integration :: Sat Aug 01 12:00:18 UTC 2026
12:00:34 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml
12:00:34:: publishing :: omero#OmeroJava-test
12:00:34 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-622-6b3a800bcb-ice36-b29.jar
12:00:34 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-622-6b3a800bcb-ice36-b29.xml
12:00:3512:00:35build-eclipse:
12:00:35No sub-builds to iterate on
12:00:35Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
12:00:3512:00:35retrieve:
12:00:35:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
12:00:35:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
12:00:4012:00:40prepare:
12:00:40Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
12:00:4412:00:44release-clients:
12:00:44Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-622-6b3a800bcb-ice36-b29.zip
12:00:4912:00:49release-zip:
12:00:49Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-622-6b3a800bcb-ice36-b29.zip
12:01:0212:01:02BUILD SUCCESSFUL
12:01:02Total time: 3 minutes 16 seconds
12:01:02++ '[' -d .git ']'
12:01:02++ python3 ./build.py release-src
12:01:02Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
12:01:0312:01:03release-src-git:
12:01:03Releasing openmicroscopy-5.6.3-622-6b3a800bcb-ice36-b29
12:01:04 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-622-6b3a800bcb-ice36-b29.zip
12:01:04 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-622-6b3a800bcb-ice36-b29-base.zip
12:01:0612:01:06BUILD SUCCESSFUL
12:01:06Total time: 4 seconds
12:01:06++ echo BUILD_NUMBER=29
12:01:06++ echo OMERO_BRANCH=merge_ci
12:01:06++ git_info
12:01:06+++ git rev-parse HEAD
12:01:06++ HEAD=6b3a800bcba4f892b1229eb8d477e595c95d7aa5
12:01:06++ git log --max-count=1 6b3a800bcba4f892b1229eb8d477e595c95d7aa5
12:01:06++ env
12:01:06++ sort
12:01:06Archiving artifacts
12:01:24Finished: SUCCESS
