07:17:42Started by upstream project "Trigger" build number 5207:17:42originally caused by:
07:17:42 Started by user devspace07:17:42 Restarted from build #51, stage OMERO Distribution
07:17:42Running as SYSTEM
07:17:42Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
07:17:42The recommended git tool is: NONE
07:17:42No credentials specified
07:17:42 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10
07:17:42Fetching changes from the remote Git repository
07:17:42 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
07:17:42Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git07:17:42 > git --version # timeout=10
07:17:42 > git --version # 'git version 2.47.3'
07:17:42 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
07:17:43 > git rev-parse origin/merge_ci^{commit} # timeout=10
07:17:43Checking out Revision 54be68746a121e1c8c57cd0b168719178bc22938 (origin/merge_ci)
07:17:43 > git config core.sparsecheckout # timeout=10
07:17:43 > git checkout -f 54be68746a121e1c8c57cd0b168719178bc22938 # timeout=10
07:17:43Commit message: "Add version.properties to etc/omero.properties"
07:17:43 > git rev-list --no-walk 6d15fa9b031293aa23bef4151dbdb945df0b61e9 # timeout=10
07:17:43Cleaning workspace
07:17:43 > git rev-parse --verify HEAD # timeout=10
07:17:43Resetting working tree
07:17:43 > git reset --hard # timeout=10
07:17:43 > git clean -fdx # timeout=10
07:17:43Copied 6 artifacts from "OMERO-python-superbuild-build" build number 2707:17:43[OMERO-build] $ /bin/bash -xe /tmp/jenkins17791597614591903537.sh
07:17:43+ mv omero-scripts/dist/omero_scripts-5.9.2.dev0.tar.gz .
07:17:43+ cd src
07:17:43+ export OMERO_BRANCH=merge_ci
07:17:43+ OMERO_BRANCH=merge_ci
07:17:43+ OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
07:17:43+ rm -rf /home/omero/workspace/OMERO-build/omero-virtualenv
07:17:43+ source /home/omero/settings.env
07:17:43++ OMERO_DB_HOST=pg
07:17:43++ OMERO_DB_USER=postgres
07:17:43++ OMERO_DB_PASS=
07:17:43++ OMERO_ROOT_PASS=omero
07:17:43++ OMERO_DATA_DIR=/OMERO
07:17:43++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
07:17:43+ python3.11 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
07:17:47+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl07:17:47Collecting zeroc-ice==3.6.5
07:17:47 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
07:17:49 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 20.3 MB/s eta 0:00:00
07:17:49Installing collected packages: zeroc-ice
07:17:50Successfully installed zeroc-ice-3.6.5
07:17:5007:17:50[notice] A new release of pip available: 22.3.1 -> 25.3
07:17:50[notice] To update, run: python3.11 -m pip install --upgrade pip
07:17:50+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U 'setuptools<66' omero-py
07:17:50Requirement already satisfied: setuptools<66 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (65.5.1)
07:17:51Collecting setuptools<66
07:17:51 Using cached setuptools-65.7.0-py3-none-any.whl (1.2 MB)
07:17:51Collecting omero-py
07:17:51 Using cached omero_py-5.21.3-py3-none-any.whl (2.8 MB)
07:17:51Collecting appdirs
07:17:51 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
07:17:51Collecting future
07:17:51 Using cached future-1.0.0-py3-none-any.whl (491 kB)
07:17:51Collecting numpy<3
07:17:51 Using cached numpy-2.4.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.7 MB)
07:17:52Collecting Pillow>=10.0.0
07:17:52 Using cached pillow-12.1.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (7.0 MB)
07:17:52Collecting PyYAML
07:17:52 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB)
07:17:52Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (from omero-py) (3.6.5)
07:17:52Collecting requests
07:17:52 Using cached requests-2.32.5-py3-none-any.whl (64 kB)
07:17:52Collecting portalocker
07:17:52 Using cached portalocker-3.2.0-py3-none-any.whl (22 kB)
07:17:52Collecting charset_normalizer<4,>=2
07:17:52 Using cached charset_normalizer-3.4.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (151 kB)
07:17:52Collecting idna<4,>=2.5
07:17:52 Using cached idna-3.11-py3-none-any.whl (71 kB)
07:17:52Collecting urllib3<3,>=1.21.1
07:17:52 Using cached urllib3-2.6.3-py3-none-any.whl (131 kB)
07:17:53Collecting certifi>=2017.4.17
07:17:53 Using cached certifi-2026.1.4-py3-none-any.whl (152 kB)
07:17:53Installing collected packages: appdirs, urllib3, setuptools, PyYAML, portalocker, Pillow, numpy, idna, future, charset_normalizer, certifi, requests, omero-py
07:17:53 Attempting uninstall: setuptools
07:17:53 Found existing installation: setuptools 65.5.1
07:17:53 Uninstalling setuptools-65.5.1:
07:17:53 Successfully uninstalled setuptools-65.5.1
07:17:58Successfully installed Pillow-12.1.0 PyYAML-6.0.3 appdirs-1.4.4 certifi-2026.1.4 charset_normalizer-3.4.4 future-1.0.0 idna-3.11 numpy-2.4.1 omero-py-5.21.3 portalocker-3.2.0 requests-2.32.5 setuptools-65.7.0 urllib3-2.6.3
07:17:5807:17:58[notice] A new release of pip available: 22.3.1 -> 25.3
07:17:58[notice] To update, run: python3.11 -m pip install --upgrade pip
07:17:58+ source /home/omero/workspace/OMERO-build/omero-virtualenv/bin/activate
07:17:58++ deactivate nondestructive
07:17:58++ '[' -n '' ']'
07:17:58++ '[' -n '' ']'
07:17:58++ hash -r
07:17:58++ '[' -n '' ']'
07:17:58++ unset VIRTUAL_ENV
07:17:58++ unset VIRTUAL_ENV_PROMPT
07:17:58++ '[' '!' nondestructive = nondestructive ']'
07:17:58++ VIRTUAL_ENV=/home/omero/workspace/OMERO-build/omero-virtualenv
07:17:58++ export VIRTUAL_ENV
07:17:58++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
07:17:58++ PATH=/home/omero/workspace/OMERO-build/omero-virtualenv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
07:17:58++ export PATH
07:17:58++ '[' -n '' ']'
07:17:58++ '[' -z '' ']'
07:17:58++ _OLD_VIRTUAL_PS1=
07:17:58++ PS1='(omero-virtualenv) '
07:17:58++ export PS1
07:17:58++ VIRTUAL_ENV_PROMPT='(omero-virtualenv) '
07:17:58++ export VIRTUAL_ENV_PROMPT
07:17:58++ hash -r
07:17:58+ source docs/hudson/OMERO.sh
07:17:58++ set -e
07:17:58++ set -u
07:17:58++ set -x
07:17:58++ source docs/hudson/functions.sh
07:17:58++ echo Building merge_ci
07:17:58Building merge_ci
07:17:58++ python3 ./build.py build-dev release-all
07:17:58Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
07:17:5907:17:59check-ivy:
07:17:59Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
07:17:59Created dir: /home/omero/workspace/OMERO-build/src/target
07:17:59:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
07:17:59:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
07:18:0007:18:00build-scons:
07:18:00Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
07:18:00No sub-builds to iterate on
07:18:00Entering /home/omero/workspace/OMERO-build/src/components/tools...
07:18:0007:18:00buildlist:
07:18:00:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
07:18:00:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
07:18:0007:18:00clean:
07:18:00Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
07:18:00Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
07:18:0007:18:00python-clean:
07:18:00WARNING: '' not a valid package name; please use only .-separated package names in setup.py
07:18:00/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-584-54be68746a-ice36-b29') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
07:18:00 warnings.warn(
07:18:00running clean
07:18:00Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
07:18:00Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
07:18:0107:18:01python-clean:
07:18:01WARNING: '' not a valid package name; please use only .-separated package names in setup.py
07:18:01/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-584-54be68746a-ice36-b29') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
07:18:01 warnings.warn(
07:18:01running clean
07:18:01Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
07:18:01Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
07:18:01Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
07:18:01Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
07:18:0107:18:01python-clean:
07:18:01WARNING: '' not a valid package name; please use only .-separated package names in setup.py
07:18:01/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-584-54be68746a-ice36-b29') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
07:18:01 warnings.warn(
07:18:01running clean
07:18:01Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
07:18:01Deleting directory /home/omero/workspace/OMERO-build/src/target
07:18:0107:18:01build-scons:
07:18:01Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
07:18:0107:18:01build:
07:18:01No sub-builds to iterate on
07:18:01Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
07:18:01Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
07:18:01Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
07:18:01Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
07:18:0107:18:01tools-init:
07:18:01no-op
07:18:0207:18:02retrieve:
07:18:02:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
07:18:02:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
07:18:1407:18:14prepare:
07:18:14Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
07:18:14Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
07:18:14Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
07:18:14Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
07:18:14Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
07:18:14Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
07:18:14Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
07:18:14Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
07:18:14Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
07:18:14Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
07:18:14Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
07:18:14Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
07:18:14Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
07:18:14Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
07:18:14Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
07:18:1407:18:14pre-compile:
07:18:14Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
07:18:14Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
07:18:14Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
07:18:14Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
07:18:14Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
07:18:1407:18:14compile:
07:18:14no-op
07:18:1407:18:14package:
07:18:14Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
07:18:1507:18:15install:
07:18:15:: delivering :: omero#omero_client;working@3ed3dc50d100 :: 5.6.3-584-54be68746a-ice36-b29 :: integration :: Fri Jan 23 07:18:01 UTC 2026
07:18:15 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
07:18:15:: publishing :: omero#omero_client
07:18:15 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-584-54be68746a-ice36-b29/omero_client-5.6.3-584-54be68746a-ice36-b29.jar
07:18:15 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-584-54be68746a-ice36-b29/omero_client-5.6.3-584-54be68746a-ice36-b29.xml
07:18:15Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
07:18:15Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
07:18:1507:18:15retrieve:
07:18:15:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
07:18:15:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
07:18:15Entering /home/omero/workspace/OMERO-build/src/components/tools...
07:18:1507:18:15dist:
07:18:15Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
07:18:15Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
07:18:15Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
07:18:15Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.9.2.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
07:18:15Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
07:18:15Copying 29 files to /home/omero/workspace/OMERO-build/src/dist
07:18:15Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
07:18:15Entering /home/omero/workspace/OMERO-build/src/components/tests...
07:18:15Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
07:18:1607:18:16copy-licenses:
07:18:16Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
07:18:16Created dir: /home/omero/workspace/OMERO-build/src/dist/share
07:18:16Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
07:18:1607:18:16copy-history:
07:18:16Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
07:18:1607:18:16copy-etc:
07:18:16Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
07:18:16Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
07:18:1607:18:16copy-sql:
07:18:16Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
07:18:2007:18:20copy-server:
07:18:20 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.1.9 won
07:18:2107:18:21copy-client:
07:18:21Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
07:18:22 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.1.9 won
07:18:2207:18:22update-version:
07:18:22Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
07:18:2207:18:22create-workdirs:
07:18:22Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
07:18:22Created dir: /home/omero/workspace/OMERO-build/src/dist/var
07:18:22Created dir: /home/omero/workspace/OMERO-build/src/dist/var/tmp
07:18:2207:18:22copy-luts:
07:18:22Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
07:18:22Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
07:18:2207:18:22test-compile:
07:18:22:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
07:18:22Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
07:18:22Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
07:18:22Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
07:18:22Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
07:18:22Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
07:18:22Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
07:18:22Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
07:18:2207:18:22testng-init:
07:18:22:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
07:18:22:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
07:18:2607:18:25,824 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.16
07:18:2607:18:25,826 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5a4700ba - No custom configurators were discovered as a service.
07:18:2607:18:25,826 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5a4700ba - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
07:18:2607:18:25,829 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5a4700ba - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
07:18:2607:18:25,830 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
07:18:2607:18:25,830 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
07:18:2607:18:25,831 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5a4700ba - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
07:18:2607:18:25,831 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5a4700ba - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
07:18:2607:18:25,832 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5a4700ba - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
07:18:2607:18:25,832 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
07:18:2607:18:25,832 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
07:18:2607:18:25,833 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@63e38fc8 - Resource [logback.xml] occurs multiple times on the classpath.
07:18:2607:18:25,833 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@63e38fc8 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
07:18:2607:18:25,833 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@63e38fc8 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
07:18:2607:18:26,029 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
07:18:2607:18:26,029 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
07:18:2607:18:26,045 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
07:18:2607:18:26,047 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@523c4a6d - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
07:18:2607:18:26,047 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@523c4a6d - Please move "immediateFlush" property into the enclosing appender.
07:18:2607:18:26,101 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@523c4a6d - Setting the "immediateFlush" property of the enclosing appender to true
07:18:2607:18:26,102 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
07:18:2607:18:26,102 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
07:18:2607:18:26,102 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
07:18:2607:18:26,102 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
07:18:2607:18:26,102 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
07:18:2607:18:26,102 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
07:18:2607:18:26,103 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@160b010e - End of configuration.
07:18:2607:18:26,105 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@742b91a5 - Registering current configuration as safe fallback point
07:18:2607:18:26,105 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5a4700ba - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 273 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
07:18:2607:18:26lifecycle.test-compile:
07:18:26Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
07:18:26Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
07:18:26warning: [options] bootstrap class path not set in conjunction with -source 8
07:18:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
07:18:27import omero.grid.RawAccessRequest;
07:18:27 ^
07:18:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
07:18:27import omero.grid.RawAccessRequest;
07:18:27 ^
07:18:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
07:18:27import omero.grid.RawAccessRequest;
07:18:27 ^
07:18:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
07:18:27import omero.model.ImportJob;
07:18:27 ^
07:18:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
07:18:27import omero.model.ImportJobI;
07:18:27 ^
07:18:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated
07:18:28 IObject link = (IObject) linkClass.newInstance();
07:18:28 ^
07:18:28 where T is a type-variable:
07:18:28 T extends Object declared in class Class
07:18:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
07:18:28 T copy = (T) obj.getClass().newInstance();
07:18:28 ^
07:18:28 where T is a type-variable:
07:18:28 T extends Object declared in class Class
07:18:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
07:18:28 RawAccessRequest raw = new RawAccessRequest();
07:18:28 ^
07:18:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
07:18:28 RawAccessRequest raw = new RawAccessRequest();
07:18:28 ^
07:18:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
07:18:28 raw.repoUuid = legacy.root().getHash().getValue();
07:18:28 ^
07:18:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
07:18:28 raw.command = "rm";
07:18:28 ^
07:18:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
07:18:28 raw.args = Arrays.asList(path);
07:18:28 ^
07:18:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
07:18:29 final IObject link = linkClass.newInstance();
07:18:29 ^
07:18:29 where T is a type-variable:
07:18:29 T extends Object declared in class Class
07:18:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
07:18:29 originalLink.setChild(annotationClass.newInstance());
07:18:29 ^
07:18:29 where T is a type-variable:
07:18:29 T extends Object declared in class Class
07:18:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
07:18:29 RoiResult r = svc.findByImage(id, new RoiOptions());
07:18:29 ^
07:18:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
07:18:29 final RawAccessRequest request = new RawAccessRequest();
07:18:29 ^
07:18:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
07:18:29 final RawAccessRequest request = new RawAccessRequest();
07:18:29 ^
07:18:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
07:18:29 request.repoUuid = repo.root().getHash().getValue();
07:18:29 ^
07:18:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
07:18:29 request.command = "exists";
07:18:29 ^
07:18:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
07:18:29 request.args = Collections.singletonList(dirPath);
07:18:29 ^
07:18:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
07:18:29 final RawAccessRequest request = new RawAccessRequest();
07:18:29 ^
07:18:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
07:18:29 final RawAccessRequest request = new RawAccessRequest();
07:18:29 ^
07:18:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
07:18:29 request.repoUuid = repo.root().getHash().getValue();
07:18:29 ^
07:18:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
07:18:29 request.command = "exists";
07:18:29 ^
07:18:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
07:18:29 request.args = Collections.singletonList(dirName);
07:18:29 ^
07:18:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
07:18:29 final ImportJob importJob = new ImportJobI();
07:18:29 ^
07:18:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
07:18:29 final ImportJob importJob = new ImportJobI();
07:18:29 ^
07:18:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
07:18:29 importJob.setImageName(omero.rtypes.rstring(name));
07:18:29 ^
07:18:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
07:18:29 importJob.setImageDescription(omero.rtypes.rstring(desc));
07:18:29 ^
07:18:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
07:18:29 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
07:18:29 ^
07:18:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
07:18:29 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
07:18:29 ^
07:18:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
07:18:29 final String savedName = sent.getImageName().getValue().toString();
07:18:29 ^
07:18:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
07:18:29 final String savedDesc = sent.getImageDescription().getValue().toString();
07:18:29 ^
07:18:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
07:18:29 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
07:18:29 ^
07:18:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
07:18:29 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
07:18:29 ^
07:18:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
07:18:29 final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
07:18:29 ^
07:18:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
07:18:29 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
07:18:29 ^
07:18:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
07:18:30 RoiResult r = svc.findByImage(image.getId().getValue(),
07:18:30 ^
07:18:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
07:18:30 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
07:18:30 ^
07:18:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
07:18:30 l = svc.getRoiMeasurements(image.getId().getValue(), options);
07:18:30 ^
07:18:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
07:18:30 l = svc.getRoiMeasurements(image.getId().getValue(), options);
07:18:30 ^
07:18:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
07:18:30 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
07:18:30 ^
07:18:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
07:18:30 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
07:18:30 ^
07:18:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
07:18:30 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
07:18:30 ^
07:18:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
07:18:30 table = svc.getTable(f.getId().getValue());
07:18:30 ^
07:18:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
07:18:30 RoiResult r = svc.findByImage(image.getId().getValue(),
07:18:30 ^
07:18:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
07:18:30 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
07:18:30 ^
07:18:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
07:18:30 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
07:18:30 ^
07:18:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
07:18:30 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
07:18:30 ^
07:18:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
07:18:30 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
07:18:30 ^
07:18:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
07:18:30 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
07:18:30 ^
07:18:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
07:18:30 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
07:18:30 ^
07:18:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
07:18:30 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
07:18:30 ^
07:18:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
07:18:30 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
07:18:30 ^
07:18:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Long(long) in Long has been deprecated and marked for removal
07:18:30 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
07:18:30 ^
07:18:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
07:18:30 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
07:18:30 ^
07:18:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
07:18:30 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
07:18:30 ^
07:18:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
07:18:30 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
07:18:30 ^
07:18:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
07:18:30 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
07:18:30 ^
07:18:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
07:18:30 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
07:18:30 ^
07:18:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
07:18:30 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
07:18:30 ^
07:18:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
07:18:30 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
07:18:30 ^
07:18:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
07:18:30 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
07:18:30 ^
07:18:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
07:18:30 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
07:18:30 ^
07:18:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
07:18:30 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
07:18:30 ^
07:18:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
07:18:30 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
07:18:30 ^
07:18:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
07:18:30 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
07:18:30 ^
07:18:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
07:18:30 svc.getShapeStatsRestricted(
07:18:30 ^
07:18:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
07:18:30 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
07:18:30 ^
07:18:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
07:18:30 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
07:18:30 ^
07:18:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AdditionalDeleteTest.java:681: error: incompatible types: String cannot be converted to RString
07:18:30 file.setName("testing");
07:18:30 ^
07:18:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
07:18:30 request.typesToIgnore = Collections.singletonList("TagAnnotation");
07:18:30 ^
07:18:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
07:18:30 request.typesToIgnore = Collections.singletonList("IAnnotationLink");
07:18:30 ^
07:18:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
07:18:30 request.typesToIgnore = Collections.singletonList("Annotation");
07:18:30 ^
07:18:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
07:18:30 request.typesToIgnore = Collections.singletonList("Annotation");
07:18:30 ^
07:18:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
07:18:30 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
07:18:30 ^
07:18:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
07:18:30 p2.setRelatedTo(p1);
07:18:30 ^
07:18:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
07:18:30 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
07:18:30 ^
07:18:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
07:18:30 pixels1.setRelatedTo(pixels2);
07:18:30 ^
07:18:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
07:18:30 Pixels pixels = pixels1.getRelatedTo();
07:18:30 ^
07:18:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
07:18:30 Assert.assertNull(pixels1.getRelatedTo());
07:18:30 ^
07:18:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
07:18:30 pixels1.setRelatedTo(pixels2);
07:18:30 ^
07:18:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
07:18:30 Pixels pixels = pixels1.getRelatedTo();
07:18:30 ^
07:18:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
07:18:30 Assert.assertNull(pixels1.getRelatedTo());
07:18:30 ^
07:18:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
07:18:30 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
07:18:30 ^
07:18:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
07:18:30 l = svc.getRoiMeasurements(image.getId().getValue(), options);
07:18:30 ^
07:18:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
07:18:30 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
07:18:30 ^
07:18:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
07:18:30 l = svc.getRoiMeasurements(image.getId().getValue(), options);
07:18:30 ^
07:18:30Note: Some input files use unchecked or unsafe operations.
07:18:30Note: Recompile with -Xlint:unchecked for details.
07:18:30Note: Some messages have been simplified; recompile with -Xdiags:verbose to get full output
07:18:301 error
07:18:3088 warnings
07:18:3007:18:30BUILD FAILED
07:18:30/home/omero/workspace/OMERO-build/src/build.xml:174: The following error occurred while executing this line:
07:18:30/home/omero/workspace/OMERO-build/src/build.xml:169: The following error occurred while executing this line:
07:18:30/home/omero/workspace/OMERO-build/src/components/antlib/resources/global.xml:316: The following error occurred while executing this line:
07:18:30/home/omero/workspace/OMERO-build/src/components/antlib/resources/lifecycle.xml:263: The following error occurred while executing this line:
07:18:30/home/omero/workspace/OMERO-build/src/components/antlib/resources/lifecycle.xml:157: Compile failed; see the compiler error output for details.
07:18:3007:18:30Total time: 32 seconds
07:18:31Build step 'Execute shell' marked build as failure
07:18:31Archiving artifacts
07:18:31Finished: FAILURE
