06:29:27Started by upstream project "Trigger" build number 3506:29:27originally caused by:
06:29:27 Started by user devspace06:29:27Running as SYSTEM
06:29:27Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
06:29:27The recommended git tool is: NONE
06:29:27No credentials specified
06:29:27 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10
06:29:27Fetching changes from the remote Git repository
06:29:27 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
06:29:27Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git06:29:27 > git --version # timeout=10
06:29:27 > git --version # 'git version 2.39.3'
06:29:27 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
06:29:32 > git rev-parse origin/merge_ci^{commit} # timeout=10
06:29:32Checking out Revision 73ca23df5ecd2d0e40a68ab9304894c9b6df91ad (origin/merge_ci)
06:29:32 > git config core.sparsecheckout # timeout=10
06:29:32 > git checkout -f 73ca23df5ecd2d0e40a68ab9304894c9b6df91ad # timeout=10
06:29:34Commit message: "Add version.properties to etc/omero.properties"
06:29:34 > git rev-list --no-walk 66bbda8c656299810a2c4cec2d9ba3795c0fc0b7 # timeout=10
06:29:34Cleaning workspace
06:29:34 > git rev-parse --verify HEAD # timeout=10
06:29:34Resetting working tree
06:29:34 > git reset --hard # timeout=10
06:29:34 > git clean -fdx # timeout=10
06:29:38Copied 6 artifacts from "OMERO-python-superbuild-build" build number 3006:29:38[OMERO-build] $ /bin/bash -xe /tmp/jenkins461552625819525945.sh
06:29:38+ mv omero-scripts/dist/omero-scripts-5.8.1.dev0.tar.gz .
06:29:38+ cd src
06:29:38+ export OMERO_BRANCH=merge_ci
06:29:38+ OMERO_BRANCH=merge_ci
06:29:38+ OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
06:29:38+ source /home/omero/settings.env
06:29:38++ OMERO_DB_HOST=pg
06:29:38++ OMERO_DB_USER=postgres
06:29:38++ OMERO_DB_PASS=
06:29:38++ OMERO_ROOT_PASS=omero
06:29:38++ OMERO_DATA_DIR=/OMERO
06:29:38++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
06:29:38+ python3 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
06:29:41+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl06:29:43Collecting zeroc-ice==3.6.5
06:29:44 Downloading https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl (31.3 MB)
06:29:46WARNING: You are using pip version 21.2.3; however, version 24.0 is available.
06:29:46You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command.
06:29:46+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U setuptools omero-py
06:29:47Requirement already satisfied: setuptools in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (69.2.0)
06:29:47Requirement already satisfied: omero-py in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (5.19.1)
06:29:48Requirement already satisfied: numpy in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.4)
06:29:48Requirement already satisfied: Pillow>=10.0.0 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (10.2.0)
06:29:48Requirement already satisfied: appdirs in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.4.4)
06:29:48Requirement already satisfied: portalocker in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.8.2)
06:29:48Requirement already satisfied: PyYAML in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (6.0.1)
06:29:48Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (3.6.5)
06:29:48Requirement already satisfied: urllib3<2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.18)
06:29:48Requirement already satisfied: requests in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.31.0)
06:29:48Requirement already satisfied: future in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.0.0)
06:29:48Requirement already satisfied: idna<4,>=2.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.6)
06:29:48Requirement already satisfied: certifi>=2017.4.17 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (2024.2.2)
06:29:48Requirement already satisfied: charset-normalizer<4,>=2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.3.2)
06:29:48WARNING: You are using pip version 21.2.3; however, version 24.0 is available.
06:29:48You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command.
06:29:48+ source docs/hudson/OMERO.sh
06:29:48++ set -e
06:29:48++ set -u
06:29:48++ set -x
06:29:48++ source docs/hudson/functions.sh
06:29:48++ echo Building merge_ci
06:29:48Building merge_ci
06:29:48++ python3 ./build.py build-dev release-all
06:29:48OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0
06:29:49Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
06:29:5006:29:50check-ivy:
06:29:50Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
06:29:50Created dir: /home/omero/workspace/OMERO-build/src/target
06:29:50:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
06:29:50:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
06:29:5106:29:51build-scons:
06:29:51Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
06:29:51No sub-builds to iterate on
06:29:51Entering /home/omero/workspace/OMERO-build/src/components/tools...
06:29:5106:29:51buildlist:
06:29:51:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
06:29:51:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
06:29:5206:29:52clean:
06:29:52Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
06:29:52Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
06:29:5206:29:52python-clean:
06:29:52WARNING: '' not a valid package name; please use only .-separated package names in setup.py
06:29:52/usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-452-73ca23df5e-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
06:29:52 warnings.warn(
06:29:52running clean
06:29:52Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
06:29:52Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
06:29:5206:29:52python-clean:
06:29:52WARNING: '' not a valid package name; please use only .-separated package names in setup.py
06:29:52/usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-452-73ca23df5e-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
06:29:52 warnings.warn(
06:29:52running clean
06:29:52Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
06:29:52Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
06:29:52Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
06:29:52Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
06:29:5206:29:52python-clean:
06:29:52WARNING: '' not a valid package name; please use only .-separated package names in setup.py
06:29:52/usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-452-73ca23df5e-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
06:29:52 warnings.warn(
06:29:52running clean
06:29:52Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
06:29:52Deleting directory /home/omero/workspace/OMERO-build/src/target
06:29:5306:29:53build-scons:
06:29:53Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
06:29:5306:29:53build:
06:29:53No sub-builds to iterate on
06:29:53Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
06:29:53Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
06:29:53Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
06:29:53Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
06:29:5306:29:53tools-init:
06:29:53no-op
06:29:5306:29:53retrieve:
06:29:53:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
06:29:53:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
06:29:54WARNING: An illegal reflective access operation has occurred
06:29:54WARNING: Illegal reflective access by org.apache.ivy.util.url.IvyAuthenticator (file:/home/omero/workspace/OMERO-build/src/lib/repository/ivy-2.4.0.jar) to field java.net.Authenticator.theAuthenticator
06:29:54WARNING: Please consider reporting this to the maintainers of org.apache.ivy.util.url.IvyAuthenticator
06:29:54WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
06:29:54WARNING: All illegal access operations will be denied in a future release
06:30:5606:30:56prepare:
06:30:56Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
06:30:56Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
06:30:56Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
06:30:56Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
06:30:56Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
06:30:56Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
06:30:56Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
06:30:56Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
06:30:56Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
06:30:56Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
06:30:56Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
06:30:56Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
06:30:56Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
06:30:56Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
06:30:56Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
06:30:5606:30:56pre-compile:
06:30:56Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
06:30:56Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
06:30:56Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
06:30:56Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
06:30:56Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
06:30:5606:30:56compile:
06:30:56no-op
06:30:5706:30:57package:
06:30:57Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
06:30:5706:30:57install:
06:30:57:: delivering :: omero#omero_client;working@aa84d84ce982 :: 5.6.3-452-73ca23df5e-ice36 :: integration :: Fri Apr 12 06:29:53 UTC 2024
06:30:57 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
06:30:57:: publishing :: omero#omero_client
06:30:57 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-452-73ca23df5e-ice36/omero_client-5.6.3-452-73ca23df5e-ice36.jar
06:30:57 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-452-73ca23df5e-ice36/omero_client-5.6.3-452-73ca23df5e-ice36.xml
06:30:57Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
06:30:57Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
06:30:5806:30:58retrieve:
06:30:58:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
06:30:58:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
06:30:58Entering /home/omero/workspace/OMERO-build/src/components/tools...
06:30:5806:30:58dist:
06:30:58Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
06:30:58Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
06:30:58Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
06:30:58Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero-scripts-5.8.1.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
06:30:59Copying 28 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
06:30:59Copying 28 files to /home/omero/workspace/OMERO-build/src/dist
06:30:59Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
06:30:59Entering /home/omero/workspace/OMERO-build/src/components/tests...
06:30:59Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
06:30:5906:30:59copy-licenses:
06:30:59Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
06:30:59Created dir: /home/omero/workspace/OMERO-build/src/dist/share
06:30:59Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
06:30:5906:30:59copy-history:
06:30:59Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
06:30:5906:30:59copy-etc:
06:30:59Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
06:30:59Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
06:30:5906:30:59copy-sql:
06:30:59Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
06:31:1606:31:16copy-server:
06:31:16 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.0.11 won
06:31:1606:31:16copy-client:
06:31:16Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
06:31:18 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.0.11 won
06:31:1806:31:18update-version:
06:31:18Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
06:31:1806:31:18create-workdirs:
06:31:18Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
06:31:18Created dir: /home/omero/workspace/OMERO-build/src/dist/var
06:31:1806:31:18copy-luts:
06:31:18Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
06:31:18Copying 39 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
06:31:1806:31:18test-compile:
06:31:18:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
06:31:18Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
06:31:18Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
06:31:18Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
06:31:18Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
06:31:18Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
06:31:18Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
06:31:18Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
06:31:1806:31:18testng-init:
06:31:18:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
06:31:18:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
06:31:2406:31:23,848 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
06:31:2406:31:23,854 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7cfe97db - No custom configurators were discovered as a service.
06:31:2406:31:23,854 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7cfe97db - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
06:31:2406:31:23,858 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7cfe97db - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
06:31:2406:31:23,859 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
06:31:2406:31:23,859 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
06:31:2406:31:23,861 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7cfe97db - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 3 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
06:31:2406:31:23,861 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7cfe97db - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
06:31:2406:31:23,864 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7cfe97db - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
06:31:2406:31:23,866 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
06:31:2406:31:23,866 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
06:31:2406:31:23,869 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@664bd35e - Resource [logback.xml] occurs multiple times on the classpath.
06:31:2406:31:23,869 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@664bd35e - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
06:31:2406:31:23,869 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@664bd35e - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
06:31:2406:31:24,277 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
06:31:2406:31:24,277 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
06:31:2406:31:24,308 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
06:31:2406:31:24,310 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@33ce766b - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
06:31:2406:31:24,310 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@33ce766b - Please move "immediateFlush" property into the enclosing appender.
06:31:2406:31:24,407 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@33ce766b - Setting the "immediateFlush" property of the enclosing appender to true
06:31:2406:31:24,408 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
06:31:2406:31:24,408 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
06:31:2406:31:24,408 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
06:31:2406:31:24,408 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
06:31:2406:31:24,409 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
06:31:2406:31:24,409 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
06:31:2406:31:24,411 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5bd8b901 - End of configuration.
06:31:2406:31:24,414 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5390bdee - Registering current configuration as safe fallback point
06:31:2406:31:24,414 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7cfe97db - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 550 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
06:31:2406:31:24lifecycle.test-compile:
06:31:24Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
06:31:24Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
06:31:25warning: [options] bootstrap class path not set in conjunction with -source 8
06:31:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
06:31:27import omero.grid.RawAccessRequest;
06:31:27 ^
06:31:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
06:31:27import omero.grid.RawAccessRequest;
06:31:27 ^
06:31:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
06:31:27import omero.grid.RawAccessRequest;
06:31:27 ^
06:31:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
06:31:27import omero.model.ImportJob;
06:31:27 ^
06:31:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
06:31:27import omero.model.ImportJobI;
06:31:27 ^
06:31:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated
06:31:28 IObject link = (IObject) linkClass.newInstance();
06:31:28 ^
06:31:28 where T is a type-variable:
06:31:28 T extends Object declared in class Class
06:31:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
06:31:29 T copy = (T) obj.getClass().newInstance();
06:31:29 ^
06:31:29 where T is a type-variable:
06:31:29 T extends Object declared in class Class
06:31:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
06:31:29 RawAccessRequest raw = new RawAccessRequest();
06:31:29 ^
06:31:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
06:31:29 RawAccessRequest raw = new RawAccessRequest();
06:31:29 ^
06:31:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
06:31:29 raw.repoUuid = legacy.root().getHash().getValue();
06:31:29 ^
06:31:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
06:31:29 raw.command = "rm";
06:31:29 ^
06:31:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
06:31:29 raw.args = Arrays.asList(path);
06:31:29 ^
06:31:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
06:31:29 final IObject link = linkClass.newInstance();
06:31:29 ^
06:31:29 where T is a type-variable:
06:31:29 T extends Object declared in class Class
06:31:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
06:31:29 originalLink.setChild(annotationClass.newInstance());
06:31:29 ^
06:31:29 where T is a type-variable:
06:31:29 T extends Object declared in class Class
06:31:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
06:31:30 RoiResult r = svc.findByImage(id, new RoiOptions());
06:31:30 ^
06:31:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
06:31:30 final RawAccessRequest request = new RawAccessRequest();
06:31:30 ^
06:31:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
06:31:30 final RawAccessRequest request = new RawAccessRequest();
06:31:30 ^
06:31:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
06:31:30 request.repoUuid = repo.root().getHash().getValue();
06:31:30 ^
06:31:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
06:31:30 request.command = "exists";
06:31:30 ^
06:31:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
06:31:30 request.args = Collections.singletonList(dirPath);
06:31:30 ^
06:31:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
06:31:30 final RawAccessRequest request = new RawAccessRequest();
06:31:30 ^
06:31:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
06:31:30 final RawAccessRequest request = new RawAccessRequest();
06:31:30 ^
06:31:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
06:31:30 request.repoUuid = repo.root().getHash().getValue();
06:31:30 ^
06:31:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
06:31:30 request.command = "exists";
06:31:30 ^
06:31:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
06:31:30 request.args = Collections.singletonList(dirName);
06:31:30 ^
06:31:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
06:31:30 final ImportJob importJob = new ImportJobI();
06:31:30 ^
06:31:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
06:31:30 final ImportJob importJob = new ImportJobI();
06:31:30 ^
06:31:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
06:31:30 importJob.setImageName(omero.rtypes.rstring(name));
06:31:30 ^
06:31:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
06:31:30 importJob.setImageDescription(omero.rtypes.rstring(desc));
06:31:30 ^
06:31:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
06:31:30 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
06:31:30 ^
06:31:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
06:31:30 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
06:31:30 ^
06:31:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
06:31:30 final String savedName = sent.getImageName().getValue().toString();
06:31:30 ^
06:31:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
06:31:30 final String savedDesc = sent.getImageDescription().getValue().toString();
06:31:30 ^
06:31:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
06:31:30 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
06:31:30 ^
06:31:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
06:31:30 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
06:31:30 ^
06:31:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
06:31:30 final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
06:31:30 ^
06:31:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
06:31:30 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
06:31:30 ^
06:31:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
06:31:31 RoiResult r = svc.findByImage(image.getId().getValue(),
06:31:31 ^
06:31:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
06:31:31 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
06:31:31 ^
06:31:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
06:31:31 l = svc.getRoiMeasurements(image.getId().getValue(), options);
06:31:31 ^
06:31:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
06:31:31 l = svc.getRoiMeasurements(image.getId().getValue(), options);
06:31:31 ^
06:31:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
06:31:31 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
06:31:31 ^
06:31:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
06:31:31 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
06:31:31 ^
06:31:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
06:31:31 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
06:31:31 ^
06:31:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
06:31:31 table = svc.getTable(f.getId().getValue());
06:31:31 ^
06:31:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
06:31:31 RoiResult r = svc.findByImage(image.getId().getValue(),
06:31:31 ^
06:31:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
06:31:31 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
06:31:31 ^
06:31:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
06:31:31 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
06:31:31 ^
06:31:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
06:31:31 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
06:31:31 ^
06:31:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
06:31:31 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
06:31:31 ^
06:31:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
06:31:31 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
06:31:31 ^
06:31:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
06:31:31 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
06:31:31 ^
06:31:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
06:31:31 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
06:31:31 ^
06:31:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
06:31:31 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
06:31:31 ^
06:31:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Long(long) in Long has been deprecated
06:31:31 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
06:31:31 ^
06:31:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
06:31:31 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
06:31:31 ^
06:31:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
06:31:31 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
06:31:31 ^
06:31:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
06:31:31 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
06:31:31 ^
06:31:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
06:31:31 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
06:31:31 ^
06:31:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
06:31:31 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
06:31:31 ^
06:31:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
06:31:31 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
06:31:31 ^
06:31:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
06:31:31 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
06:31:31 ^
06:31:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
06:31:31 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
06:31:31 ^
06:31:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
06:31:31 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
06:31:31 ^
06:31:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
06:31:31 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
06:31:31 ^
06:31:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
06:31:31 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
06:31:31 ^
06:31:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
06:31:31 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
06:31:31 ^
06:31:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
06:31:31 svc.getShapeStatsRestricted(
06:31:31 ^
06:31:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
06:31:31 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
06:31:31 ^
06:31:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
06:31:31 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
06:31:31 ^
06:31:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
06:31:31 request.typesToIgnore = Collections.singletonList("TagAnnotation");
06:31:31 ^
06:31:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
06:31:31 request.typesToIgnore = Collections.singletonList("IAnnotationLink");
06:31:31 ^
06:31:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
06:31:31 request.typesToIgnore = Collections.singletonList("Annotation");
06:31:31 ^
06:31:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
06:31:31 request.typesToIgnore = Collections.singletonList("Annotation");
06:31:31 ^
06:31:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
06:31:31 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
06:31:31 ^
06:31:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
06:31:31 p2.setRelatedTo(p1);
06:31:31 ^
06:31:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
06:31:31 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
06:31:31 ^
06:31:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
06:31:31 pixels1.setRelatedTo(pixels2);
06:31:31 ^
06:31:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
06:31:31 Pixels pixels = pixels1.getRelatedTo();
06:31:31 ^
06:31:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
06:31:31 Assert.assertNull(pixels1.getRelatedTo());
06:31:31 ^
06:31:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
06:31:31 pixels1.setRelatedTo(pixels2);
06:31:31 ^
06:31:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
06:31:31 Pixels pixels = pixels1.getRelatedTo();
06:31:31 ^
06:31:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
06:31:31 Assert.assertNull(pixels1.getRelatedTo());
06:31:31 ^
06:31:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
06:31:31 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
06:31:31 ^
06:31:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
06:31:31 l = svc.getRoiMeasurements(image.getId().getValue(), options);
06:31:31 ^
06:31:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
06:31:31 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
06:31:31 ^
06:31:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
06:31:31 l = svc.getRoiMeasurements(image.getId().getValue(), options);
06:31:31 ^
06:31:32Note: Some input files use unchecked or unsafe operations.
06:31:32Note: Recompile with -Xlint:unchecked for details.
06:31:3288 warnings
06:31:32Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_2118236101.tmp
06:31:32Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar
06:31:32:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
06:31:32:: delivering :: omero#OmeroJava-test;working@aa84d84ce982 :: 5.6.3-452-73ca23df5e-ice36 :: integration :: Fri Apr 12 06:31:18 UTC 2024
06:31:32 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml
06:31:32:: publishing :: omero#OmeroJava-test
06:31:32 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-452-73ca23df5e-ice36.jar
06:31:32 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-452-73ca23df5e-ice36.xml
06:31:3206:31:32build-eclipse:
06:31:32No sub-builds to iterate on
06:31:32Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
06:31:3206:31:32retrieve:
06:31:32:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
06:31:32:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
06:31:3506:31:35prepare:
06:31:35Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
06:31:3706:31:37release-clients:
06:31:37Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-452-73ca23df5e-ice36.zip
06:31:4306:31:43release-zip:
06:31:43Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-452-73ca23df5e-ice36.zip
06:31:5606:31:56BUILD SUCCESSFUL
06:31:56Total time: 2 minutes 7 seconds
06:31:57++ '[' -d .git ']'
06:31:57++ python3 ./build.py release-src
06:31:57OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0
06:31:57Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
06:31:5706:31:57release-src-git:
06:31:57Releasing openmicroscopy-5.6.3-452-73ca23df5e-ice36
06:31:59 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-452-73ca23df5e-ice36.zip
06:31:59 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-452-73ca23df5e-ice36-base.zip
06:32:0106:32:01BUILD SUCCESSFUL
06:32:01Total time: 4 seconds
06:32:01++ echo BUILD_NUMBER=30
06:32:01++ echo OMERO_BRANCH=merge_ci
06:32:01++ git_info
06:32:01+++ git rev-parse HEAD
06:32:01++ HEAD=73ca23df5ecd2d0e40a68ab9304894c9b6df91ad
06:32:01++ git log --max-count=1 73ca23df5ecd2d0e40a68ab9304894c9b6df91ad
06:32:01++ env
06:32:01++ sort
06:32:01Archiving artifacts
06:32:34Finished: SUCCESS
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