08:18:37Started by upstream project "Trigger" build number 5308:18:37originally caused by:
08:18:37 Started by user devspace08:18:37 Restarted from build #52, stage OMERO Distribution
08:18:37Running as SYSTEM
08:18:37Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
08:18:37The recommended git tool is: NONE
08:18:37No credentials specified
08:18:37 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10
08:18:37Fetching changes from the remote Git repository
08:18:37 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
08:18:37Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git08:18:37 > git --version # timeout=10
08:18:37 > git --version # 'git version 2.47.3'
08:18:37 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
08:18:38 > git rev-parse origin/merge_ci^{commit} # timeout=10
08:18:38Checking out Revision e85749924e415997e3b44cb7dce742ebbe048cc8 (origin/merge_ci)
08:18:38 > git config core.sparsecheckout # timeout=10
08:18:38 > git checkout -f e85749924e415997e3b44cb7dce742ebbe048cc8 # timeout=10
08:18:38Commit message: "Add version.properties to etc/omero.properties"
08:18:38 > git rev-list --no-walk 54be68746a121e1c8c57cd0b168719178bc22938 # timeout=10
08:18:38Cleaning workspace
08:18:38 > git rev-parse --verify HEAD # timeout=10
08:18:38Resetting working tree
08:18:38 > git reset --hard # timeout=10
08:18:38 > git clean -fdx # timeout=10
08:18:38Copied 6 artifacts from "OMERO-python-superbuild-build" build number 2708:18:38[OMERO-build] $ /bin/bash -xe /tmp/jenkins8537800364099004175.sh
08:18:38+ mv omero-scripts/dist/omero_scripts-5.9.2.dev0.tar.gz .
08:18:38+ cd src
08:18:38+ export OMERO_BRANCH=merge_ci
08:18:38+ OMERO_BRANCH=merge_ci
08:18:38+ OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
08:18:38+ rm -rf /home/omero/workspace/OMERO-build/omero-virtualenv
08:18:38+ source /home/omero/settings.env
08:18:38++ OMERO_DB_HOST=pg
08:18:38++ OMERO_DB_USER=postgres
08:18:38++ OMERO_DB_PASS=
08:18:38++ OMERO_ROOT_PASS=omero
08:18:38++ OMERO_DATA_DIR=/OMERO
08:18:38++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
08:18:38+ python3.11 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
08:18:42+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl08:18:42Collecting zeroc-ice==3.6.5
08:18:43 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
08:18:45 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 12.3 MB/s eta 0:00:00
08:18:45Installing collected packages: zeroc-ice
08:18:46Successfully installed zeroc-ice-3.6.5
08:18:4608:18:46[notice] A new release of pip available: 22.3.1 -> 25.3
08:18:46[notice] To update, run: python3.11 -m pip install --upgrade pip
08:18:46+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U 'setuptools<66' omero-py
08:18:46Requirement already satisfied: setuptools<66 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (65.5.1)
08:18:46Collecting setuptools<66
08:18:46 Using cached setuptools-65.7.0-py3-none-any.whl (1.2 MB)
08:18:46Collecting omero-py
08:18:46 Using cached omero_py-5.21.3-py3-none-any.whl (2.8 MB)
08:18:47Collecting appdirs
08:18:47 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
08:18:47Collecting future
08:18:47 Using cached future-1.0.0-py3-none-any.whl (491 kB)
08:18:47Collecting numpy<3
08:18:47 Using cached numpy-2.4.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.7 MB)
08:18:48Collecting Pillow>=10.0.0
08:18:48 Using cached pillow-12.1.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (7.0 MB)
08:18:48Collecting PyYAML
08:18:48 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB)
08:18:48Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (from omero-py) (3.6.5)
08:18:48Collecting requests
08:18:48 Using cached requests-2.32.5-py3-none-any.whl (64 kB)
08:18:48Collecting portalocker
08:18:48 Using cached portalocker-3.2.0-py3-none-any.whl (22 kB)
08:18:48Collecting charset_normalizer<4,>=2
08:18:48 Using cached charset_normalizer-3.4.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (151 kB)
08:18:48Collecting idna<4,>=2.5
08:18:48 Using cached idna-3.11-py3-none-any.whl (71 kB)
08:18:48Collecting urllib3<3,>=1.21.1
08:18:48 Using cached urllib3-2.6.3-py3-none-any.whl (131 kB)
08:18:48Collecting certifi>=2017.4.17
08:18:48 Using cached certifi-2026.1.4-py3-none-any.whl (152 kB)
08:18:48Installing collected packages: appdirs, urllib3, setuptools, PyYAML, portalocker, Pillow, numpy, idna, future, charset_normalizer, certifi, requests, omero-py
08:18:49 Attempting uninstall: setuptools
08:18:49 Found existing installation: setuptools 65.5.1
08:18:49 Uninstalling setuptools-65.5.1:
08:18:49 Successfully uninstalled setuptools-65.5.1
08:18:54Successfully installed Pillow-12.1.0 PyYAML-6.0.3 appdirs-1.4.4 certifi-2026.1.4 charset_normalizer-3.4.4 future-1.0.0 idna-3.11 numpy-2.4.1 omero-py-5.21.3 portalocker-3.2.0 requests-2.32.5 setuptools-65.7.0 urllib3-2.6.3
08:18:5408:18:54[notice] A new release of pip available: 22.3.1 -> 25.3
08:18:54[notice] To update, run: python3.11 -m pip install --upgrade pip
08:18:54+ source /home/omero/workspace/OMERO-build/omero-virtualenv/bin/activate
08:18:54++ deactivate nondestructive
08:18:54++ '[' -n '' ']'
08:18:54++ '[' -n '' ']'
08:18:54++ hash -r
08:18:54++ '[' -n '' ']'
08:18:54++ unset VIRTUAL_ENV
08:18:54++ unset VIRTUAL_ENV_PROMPT
08:18:54++ '[' '!' nondestructive = nondestructive ']'
08:18:54++ VIRTUAL_ENV=/home/omero/workspace/OMERO-build/omero-virtualenv
08:18:54++ export VIRTUAL_ENV
08:18:54++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
08:18:54++ PATH=/home/omero/workspace/OMERO-build/omero-virtualenv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
08:18:54++ export PATH
08:18:54++ '[' -n '' ']'
08:18:54++ '[' -z '' ']'
08:18:54++ _OLD_VIRTUAL_PS1=
08:18:54++ PS1='(omero-virtualenv) '
08:18:54++ export PS1
08:18:54++ VIRTUAL_ENV_PROMPT='(omero-virtualenv) '
08:18:54++ export VIRTUAL_ENV_PROMPT
08:18:54++ hash -r
08:18:54+ source docs/hudson/OMERO.sh
08:18:54++ set -e
08:18:54++ set -u
08:18:54++ set -x
08:18:54++ source docs/hudson/functions.sh
08:18:54++ echo Building merge_ci
08:18:54Building merge_ci
08:18:54++ python3 ./build.py build-dev release-all
08:18:54Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
08:18:5508:18:55check-ivy:
08:18:55Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
08:18:55Created dir: /home/omero/workspace/OMERO-build/src/target
08:18:55:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
08:18:55:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
08:18:5508:18:55build-scons:
08:18:55Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
08:18:55No sub-builds to iterate on
08:18:55Entering /home/omero/workspace/OMERO-build/src/components/tools...
08:18:5608:18:56buildlist:
08:18:56:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
08:18:56:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
08:18:5608:18:56clean:
08:18:56Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
08:18:56Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
08:18:5608:18:56python-clean:
08:18:56WARNING: '' not a valid package name; please use only .-separated package names in setup.py
08:18:56/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-585-e85749924e-ice36-b30') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
08:18:56 warnings.warn(
08:18:56running clean
08:18:56Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
08:18:56Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
08:18:5608:18:56python-clean:
08:18:56WARNING: '' not a valid package name; please use only .-separated package names in setup.py
08:18:56/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-585-e85749924e-ice36-b30') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
08:18:56 warnings.warn(
08:18:56running clean
08:18:56Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
08:18:57Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
08:18:57Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
08:18:57Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
08:18:5708:18:57python-clean:
08:18:57WARNING: '' not a valid package name; please use only .-separated package names in setup.py
08:18:57/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-585-e85749924e-ice36-b30') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
08:18:57 warnings.warn(
08:18:57running clean
08:18:57Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
08:18:57Deleting directory /home/omero/workspace/OMERO-build/src/target
08:18:5708:18:57build-scons:
08:18:57Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
08:18:5708:18:57build:
08:18:57No sub-builds to iterate on
08:18:57Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
08:18:57Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
08:18:57Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
08:18:57Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
08:18:5708:18:57tools-init:
08:18:57no-op
08:18:5708:18:57retrieve:
08:18:57:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
08:18:57:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
08:19:1008:19:10prepare:
08:19:10Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
08:19:10Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
08:19:10Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
08:19:10Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
08:19:10Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
08:19:10Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
08:19:10Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
08:19:10Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
08:19:10Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
08:19:10Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
08:19:10Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
08:19:10Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
08:19:10Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
08:19:10Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
08:19:10Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
08:19:1008:19:10pre-compile:
08:19:10Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
08:19:10Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
08:19:10Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
08:19:11Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
08:19:11Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
08:19:1108:19:11compile:
08:19:11no-op
08:19:1108:19:11package:
08:19:11Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
08:19:1108:19:11install:
08:19:11:: delivering :: omero#omero_client;working@3ed3dc50d100 :: 5.6.3-585-e85749924e-ice36-b30 :: integration :: Fri Jan 23 08:18:57 UTC 2026
08:19:11 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
08:19:11:: publishing :: omero#omero_client
08:19:11 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-585-e85749924e-ice36-b30/omero_client-5.6.3-585-e85749924e-ice36-b30.jar
08:19:11 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-585-e85749924e-ice36-b30/omero_client-5.6.3-585-e85749924e-ice36-b30.xml
08:19:11Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
08:19:11Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
08:19:1108:19:11retrieve:
08:19:11:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
08:19:11:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
08:19:12Entering /home/omero/workspace/OMERO-build/src/components/tools...
08:19:1208:19:12dist:
08:19:12Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
08:19:12Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
08:19:12Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
08:19:12Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.9.2.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
08:19:12Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
08:19:12Copying 29 files to /home/omero/workspace/OMERO-build/src/dist
08:19:12Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
08:19:12Entering /home/omero/workspace/OMERO-build/src/components/tests...
08:19:12Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
08:19:1208:19:12copy-licenses:
08:19:12Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
08:19:12Created dir: /home/omero/workspace/OMERO-build/src/dist/share
08:19:12Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
08:19:1208:19:12copy-history:
08:19:12Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
08:19:1208:19:12copy-etc:
08:19:12Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
08:19:12Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
08:19:1208:19:12copy-sql:
08:19:12Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
08:19:1708:19:17copy-server:
08:19:17 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.1.9 won
08:19:1808:19:18copy-client:
08:19:18Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
08:19:19 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.1.9 won
08:19:1908:19:19update-version:
08:19:19Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
08:19:1908:19:19create-workdirs:
08:19:19Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
08:19:19Created dir: /home/omero/workspace/OMERO-build/src/dist/var
08:19:19Created dir: /home/omero/workspace/OMERO-build/src/dist/var/tmp
08:19:1908:19:19copy-luts:
08:19:19Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
08:19:19Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
08:19:1908:19:19test-compile:
08:19:19:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
08:19:19Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
08:19:19Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
08:19:19Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
08:19:19Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
08:19:19Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
08:19:20Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
08:19:20Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
08:19:2008:19:20testng-init:
08:19:20:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
08:19:20:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
08:19:2208:19:22,604 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.16
08:19:2208:19:22,606 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5a4700ba - No custom configurators were discovered as a service.
08:19:2208:19:22,606 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5a4700ba - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
08:19:2208:19:22,609 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5a4700ba - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
08:19:2208:19:22,609 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
08:19:2208:19:22,609 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
08:19:2208:19:22,610 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5a4700ba - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
08:19:2208:19:22,610 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5a4700ba - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
08:19:2208:19:22,611 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5a4700ba - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
08:19:2208:19:22,611 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
08:19:2208:19:22,612 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
08:19:2208:19:22,612 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@63e38fc8 - Resource [logback.xml] occurs multiple times on the classpath.
08:19:2208:19:22,612 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@63e38fc8 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
08:19:2208:19:22,612 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@63e38fc8 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
08:19:2208:19:22,811 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
08:19:2208:19:22,811 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
08:19:2208:19:22,828 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
08:19:2208:19:22,830 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@523c4a6d - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
08:19:2208:19:22,830 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@523c4a6d - Please move "immediateFlush" property into the enclosing appender.
08:19:2208:19:22,885 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@523c4a6d - Setting the "immediateFlush" property of the enclosing appender to true
08:19:2208:19:22,885 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
08:19:2208:19:22,885 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
08:19:2208:19:22,885 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
08:19:2208:19:22,886 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
08:19:2208:19:22,886 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
08:19:2208:19:22,886 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
08:19:2208:19:22,887 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@160b010e - End of configuration.
08:19:2208:19:22,888 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@742b91a5 - Registering current configuration as safe fallback point
08:19:2208:19:22,888 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5a4700ba - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 277 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
08:19:2208:19:22lifecycle.test-compile:
08:19:22Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
08:19:22Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
08:19:23warning: [options] bootstrap class path not set in conjunction with -source 8
08:19:24/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
08:19:24import omero.grid.RawAccessRequest;
08:19:24 ^
08:19:24/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
08:19:24import omero.grid.RawAccessRequest;
08:19:24 ^
08:19:24/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
08:19:24import omero.grid.RawAccessRequest;
08:19:24 ^
08:19:24/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
08:19:24import omero.model.ImportJob;
08:19:24 ^
08:19:24/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
08:19:24import omero.model.ImportJobI;
08:19:24 ^
08:19:25/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated
08:19:25 IObject link = (IObject) linkClass.newInstance();
08:19:25 ^
08:19:25 where T is a type-variable:
08:19:25 T extends Object declared in class Class
08:19:25/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
08:19:25 T copy = (T) obj.getClass().newInstance();
08:19:25 ^
08:19:25 where T is a type-variable:
08:19:25 T extends Object declared in class Class
08:19:25/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
08:19:25 RawAccessRequest raw = new RawAccessRequest();
08:19:25 ^
08:19:25/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
08:19:25 RawAccessRequest raw = new RawAccessRequest();
08:19:25 ^
08:19:25/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
08:19:25 raw.repoUuid = legacy.root().getHash().getValue();
08:19:25 ^
08:19:25/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
08:19:25 raw.command = "rm";
08:19:25 ^
08:19:25/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
08:19:25 raw.args = Arrays.asList(path);
08:19:25 ^
08:19:25/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
08:19:25 final IObject link = linkClass.newInstance();
08:19:25 ^
08:19:25 where T is a type-variable:
08:19:25 T extends Object declared in class Class
08:19:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
08:19:26 originalLink.setChild(annotationClass.newInstance());
08:19:26 ^
08:19:26 where T is a type-variable:
08:19:26 T extends Object declared in class Class
08:19:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
08:19:26 RoiResult r = svc.findByImage(id, new RoiOptions());
08:19:26 ^
08:19:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
08:19:26 final RawAccessRequest request = new RawAccessRequest();
08:19:26 ^
08:19:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
08:19:26 final RawAccessRequest request = new RawAccessRequest();
08:19:26 ^
08:19:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
08:19:26 request.repoUuid = repo.root().getHash().getValue();
08:19:26 ^
08:19:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
08:19:26 request.command = "exists";
08:19:26 ^
08:19:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
08:19:26 request.args = Collections.singletonList(dirPath);
08:19:26 ^
08:19:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
08:19:26 final RawAccessRequest request = new RawAccessRequest();
08:19:26 ^
08:19:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
08:19:26 final RawAccessRequest request = new RawAccessRequest();
08:19:26 ^
08:19:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
08:19:26 request.repoUuid = repo.root().getHash().getValue();
08:19:26 ^
08:19:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
08:19:26 request.command = "exists";
08:19:26 ^
08:19:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
08:19:26 request.args = Collections.singletonList(dirName);
08:19:26 ^
08:19:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
08:19:26 final ImportJob importJob = new ImportJobI();
08:19:26 ^
08:19:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
08:19:26 final ImportJob importJob = new ImportJobI();
08:19:26 ^
08:19:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
08:19:26 importJob.setImageName(omero.rtypes.rstring(name));
08:19:26 ^
08:19:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
08:19:26 importJob.setImageDescription(omero.rtypes.rstring(desc));
08:19:26 ^
08:19:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
08:19:26 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
08:19:26 ^
08:19:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
08:19:26 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
08:19:26 ^
08:19:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
08:19:26 final String savedName = sent.getImageName().getValue().toString();
08:19:26 ^
08:19:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
08:19:26 final String savedDesc = sent.getImageDescription().getValue().toString();
08:19:26 ^
08:19:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
08:19:26 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
08:19:26 ^
08:19:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
08:19:26 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
08:19:26 ^
08:19:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
08:19:26 final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
08:19:26 ^
08:19:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
08:19:26 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
08:19:26 ^
08:19:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
08:19:27 RoiResult r = svc.findByImage(image.getId().getValue(),
08:19:27 ^
08:19:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
08:19:27 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
08:19:27 ^
08:19:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
08:19:27 l = svc.getRoiMeasurements(image.getId().getValue(), options);
08:19:27 ^
08:19:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
08:19:27 l = svc.getRoiMeasurements(image.getId().getValue(), options);
08:19:27 ^
08:19:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
08:19:27 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
08:19:27 ^
08:19:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
08:19:27 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
08:19:27 ^
08:19:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
08:19:27 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
08:19:27 ^
08:19:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
08:19:27 table = svc.getTable(f.getId().getValue());
08:19:27 ^
08:19:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
08:19:27 RoiResult r = svc.findByImage(image.getId().getValue(),
08:19:27 ^
08:19:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
08:19:27 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
08:19:27 ^
08:19:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
08:19:27 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
08:19:27 ^
08:19:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
08:19:27 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
08:19:27 ^
08:19:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
08:19:27 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
08:19:27 ^
08:19:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
08:19:27 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
08:19:27 ^
08:19:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
08:19:27 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
08:19:27 ^
08:19:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
08:19:27 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
08:19:27 ^
08:19:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
08:19:27 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
08:19:27 ^
08:19:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Long(long) in Long has been deprecated and marked for removal
08:19:27 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
08:19:27 ^
08:19:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
08:19:27 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
08:19:27 ^
08:19:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
08:19:27 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
08:19:27 ^
08:19:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
08:19:27 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
08:19:27 ^
08:19:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
08:19:27 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
08:19:27 ^
08:19:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
08:19:27 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
08:19:27 ^
08:19:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
08:19:27 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
08:19:27 ^
08:19:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
08:19:27 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
08:19:27 ^
08:19:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
08:19:27 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
08:19:27 ^
08:19:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
08:19:27 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
08:19:27 ^
08:19:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
08:19:27 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
08:19:27 ^
08:19:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
08:19:27 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
08:19:27 ^
08:19:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
08:19:27 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
08:19:27 ^
08:19:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
08:19:27 svc.getShapeStatsRestricted(
08:19:27 ^
08:19:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
08:19:27 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
08:19:27 ^
08:19:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
08:19:27 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
08:19:27 ^
08:19:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
08:19:27 request.typesToIgnore = Collections.singletonList("TagAnnotation");
08:19:27 ^
08:19:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
08:19:27 request.typesToIgnore = Collections.singletonList("IAnnotationLink");
08:19:27 ^
08:19:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
08:19:27 request.typesToIgnore = Collections.singletonList("Annotation");
08:19:27 ^
08:19:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
08:19:27 request.typesToIgnore = Collections.singletonList("Annotation");
08:19:27 ^
08:19:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
08:19:27 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
08:19:27 ^
08:19:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
08:19:27 p2.setRelatedTo(p1);
08:19:27 ^
08:19:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
08:19:27 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
08:19:27 ^
08:19:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
08:19:27 pixels1.setRelatedTo(pixels2);
08:19:27 ^
08:19:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
08:19:27 Pixels pixels = pixels1.getRelatedTo();
08:19:27 ^
08:19:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
08:19:27 Assert.assertNull(pixels1.getRelatedTo());
08:19:27 ^
08:19:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
08:19:27 pixels1.setRelatedTo(pixels2);
08:19:27 ^
08:19:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
08:19:27 Pixels pixels = pixels1.getRelatedTo();
08:19:27 ^
08:19:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
08:19:27 Assert.assertNull(pixels1.getRelatedTo());
08:19:27 ^
08:19:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
08:19:27 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
08:19:27 ^
08:19:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
08:19:27 l = svc.getRoiMeasurements(image.getId().getValue(), options);
08:19:27 ^
08:19:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
08:19:27 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
08:19:27 ^
08:19:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
08:19:27 l = svc.getRoiMeasurements(image.getId().getValue(), options);
08:19:27 ^
08:19:27Note: Some input files use unchecked or unsafe operations.
08:19:27Note: Recompile with -Xlint:unchecked for details.
08:19:2788 warnings
08:19:27Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_1237748980.tmp
08:19:27Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar
08:19:27:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
08:19:27:: delivering :: omero#OmeroJava-test;working@3ed3dc50d100 :: 5.6.3-585-e85749924e-ice36-b30 :: integration :: Fri Jan 23 08:19:20 UTC 2026
08:19:27 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml
08:19:27:: publishing :: omero#OmeroJava-test
08:19:27 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-585-e85749924e-ice36-b30.jar
08:19:27 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-585-e85749924e-ice36-b30.xml
08:19:2708:19:27build-eclipse:
08:19:27No sub-builds to iterate on
08:19:28Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
08:19:2808:19:28retrieve:
08:19:28:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
08:19:28:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
08:19:3008:19:30prepare:
08:19:30Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
08:19:3108:19:31release-clients:
08:19:31Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-585-e85749924e-ice36-b30.zip
08:19:3608:19:36release-zip:
08:19:36Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-585-e85749924e-ice36-b30.zip
08:19:4708:19:47BUILD SUCCESSFUL
08:19:47Total time: 52 seconds
08:19:47++ '[' -d .git ']'
08:19:47++ python3 ./build.py release-src
08:19:47Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
08:19:4708:19:47release-src-git:
08:19:47Releasing openmicroscopy-5.6.3-585-e85749924e-ice36-b30
08:19:49 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-585-e85749924e-ice36-b30.zip
08:19:49 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-585-e85749924e-ice36-b30-base.zip
08:19:5008:19:50BUILD SUCCESSFUL
08:19:50Total time: 3 seconds
08:19:50++ echo BUILD_NUMBER=30
08:19:50++ echo OMERO_BRANCH=merge_ci
08:19:50++ git_info
08:19:50+++ git rev-parse HEAD
08:19:50++ HEAD=e85749924e415997e3b44cb7dce742ebbe048cc8
08:19:50++ git log --max-count=1 e85749924e415997e3b44cb7dce742ebbe048cc8
08:19:50++ env
08:19:50++ sort
08:19:50Archiving artifacts
08:20:07Finished: SUCCESS
