09:23:38Started by upstream project "Trigger" build number 4209:23:38originally caused by:
09:23:38 Started by user devspace09:23:38Running as SYSTEM
09:23:38Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
09:23:38The recommended git tool is: NONE
09:23:38No credentials specified
09:23:38 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10
09:23:38Fetching changes from the remote Git repository
09:23:38 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
09:23:38Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git09:23:38 > git --version # timeout=10
09:23:38 > git --version # 'git version 2.52.0'
09:23:38 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
09:23:41 > git rev-parse origin/merge_ci^{commit} # timeout=10
09:23:41Checking out Revision 9dcf70e17eb693df3a032f408d3a57fd1a216841 (origin/merge_ci)
09:23:41 > git config core.sparsecheckout # timeout=10
09:23:41 > git checkout -f 9dcf70e17eb693df3a032f408d3a57fd1a216841 # timeout=10
09:23:42Commit message: "Add version.properties to etc/omero.properties"
09:23:42 > git rev-list --no-walk 4200ce5a560278872282579f324b813e24f6765e # timeout=10
09:23:42Cleaning workspace
09:23:42 > git rev-parse --verify HEAD # timeout=10
09:23:42Resetting working tree
09:23:42 > git reset --hard # timeout=10
09:23:42 > git clean -fdx # timeout=10
09:24:13Copied 6 artifacts from "OMERO-python-superbuild-build" build number 2709:24:13[OMERO-build] $ /bin/bash -xe /tmp/jenkins17906671931914310338.sh
09:24:13+ mv omero-scripts/dist/omero_scripts-5.10.1.dev0.tar.gz .
09:24:13+ cd src
09:24:13+ export OMERO_BRANCH=merge_ci
09:24:13+ OMERO_BRANCH=merge_ci
09:24:13+ OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
09:24:13+ rm -rf /home/omero/workspace/OMERO-build/omero-virtualenv
09:24:35+ source /home/omero/settings.env
09:24:35++ OMERO_DB_HOST=pg
09:24:35++ OMERO_DB_USER=postgres
09:24:35++ OMERO_DB_PASS=
09:24:35++ OMERO_ROOT_PASS=omero
09:24:35++ OMERO_DATA_DIR=/OMERO
09:24:35++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
09:24:35+ python3.11 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
09:24:53+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl09:24:54Collecting zeroc-ice==3.6.5
09:24:55 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
09:24:57 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 11.8 MB/s eta 0:00:00
09:24:58Installing collected packages: zeroc-ice
09:25:01Successfully installed zeroc-ice-3.6.5
09:25:0109:25:01[notice] A new release of pip available: 22.3.1 -> 26.2
09:25:01[notice] To update, run: python3.11 -m pip install --upgrade pip
09:25:01+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U 'setuptools<66' omero-py
09:25:02Requirement already satisfied: setuptools<66 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (65.5.1)
09:25:02Collecting setuptools<66
09:25:02 Using cached setuptools-65.7.0-py3-none-any.whl (1.2 MB)
09:25:03Collecting omero-py
09:25:03 Using cached omero_py-5.23.0-py3-none-any.whl (2.8 MB)
09:25:03Collecting appdirs
09:25:03 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
09:25:03Collecting future
09:25:03 Using cached future-1.0.0-py3-none-any.whl (491 kB)
09:25:03Collecting numpy<3,>=2
09:25:03 Using cached numpy-2.4.6-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB)
09:25:04Collecting Pillow>=10.0.0
09:25:04 Using cached pillow-12.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (6.9 MB)
09:25:04Collecting PyYAML
09:25:04 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB)
09:25:04Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (from omero-py) (3.6.5)
09:25:04Collecting requests
09:25:05 Using cached requests-2.34.2-py3-none-any.whl (73 kB)
09:25:05Collecting portalocker
09:25:05 Using cached portalocker-4.0.0-py3-none-any.whl (33 kB)
09:25:05Collecting charset_normalizer<4,>=2
09:25:05 Using cached charset_normalizer-3.4.9-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (221 kB)
09:25:05Collecting idna<4,>=2.5
09:25:05 Using cached idna-3.18-py3-none-any.whl (65 kB)
09:25:05Collecting urllib3<3,>=1.26
09:25:05 Using cached urllib3-2.7.0-py3-none-any.whl (131 kB)
09:25:05Collecting certifi>=2023.5.7
09:25:05 Using cached certifi-2026.7.22-py3-none-any.whl (136 kB)
09:25:06Installing collected packages: appdirs, urllib3, setuptools, PyYAML, portalocker, Pillow, numpy, idna, future, charset_normalizer, certifi, requests, omero-py
09:25:07 Attempting uninstall: setuptools
09:25:07 Found existing installation: setuptools 65.5.1
09:25:07 Uninstalling setuptools-65.5.1:
09:25:08 Successfully uninstalled setuptools-65.5.1
09:26:06Successfully installed Pillow-12.3.0 PyYAML-6.0.3 appdirs-1.4.4 certifi-2026.7.22 charset_normalizer-3.4.9 future-1.0.0 idna-3.18 numpy-2.4.6 omero-py-5.23.0 portalocker-4.0.0 requests-2.34.2 setuptools-65.7.0 urllib3-2.7.0
09:26:0609:26:06[notice] A new release of pip available: 22.3.1 -> 26.2
09:26:06[notice] To update, run: python3.11 -m pip install --upgrade pip
09:26:06+ source /home/omero/workspace/OMERO-build/omero-virtualenv/bin/activate
09:26:06++ deactivate nondestructive
09:26:06++ '[' -n '' ']'
09:26:06++ '[' -n '' ']'
09:26:06++ hash -r
09:26:06++ '[' -n '' ']'
09:26:06++ unset VIRTUAL_ENV
09:26:06++ unset VIRTUAL_ENV_PROMPT
09:26:06++ '[' '!' nondestructive = nondestructive ']'
09:26:06++ VIRTUAL_ENV=/home/omero/workspace/OMERO-build/omero-virtualenv
09:26:06++ export VIRTUAL_ENV
09:26:06++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
09:26:06++ PATH=/home/omero/workspace/OMERO-build/omero-virtualenv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
09:26:06++ export PATH
09:26:06++ '[' -n '' ']'
09:26:06++ '[' -z '' ']'
09:26:06++ _OLD_VIRTUAL_PS1=
09:26:06++ PS1='(omero-virtualenv) '
09:26:06++ export PS1
09:26:06++ VIRTUAL_ENV_PROMPT='(omero-virtualenv) '
09:26:06++ export VIRTUAL_ENV_PROMPT
09:26:06++ hash -r
09:26:06+ source docs/hudson/OMERO.sh
09:26:06++ set -e
09:26:06++ set -u
09:26:06++ set -x
09:26:06++ source docs/hudson/functions.sh
09:26:06++ echo Building merge_ci
09:26:06Building merge_ci
09:26:06++ python3 ./build.py build-dev release-all
09:26:06Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
09:26:0809:26:08check-ivy:
09:26:08Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
09:26:08Created dir: /home/omero/workspace/OMERO-build/src/target
09:26:08:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
09:26:08:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
09:26:1009:26:10build-scons:
09:26:10Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
09:26:11No sub-builds to iterate on
09:26:12Entering /home/omero/workspace/OMERO-build/src/components/tools...
09:26:1209:26:12buildlist:
09:26:12:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
09:26:12:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
09:26:1209:26:12clean:
09:26:12Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
09:26:13Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
09:26:1309:26:13python-clean:
09:26:13WARNING: '' not a valid package name; please use only .-separated package names in setup.py
09:26:13/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-622-9dcf70e17e-ice36-b31') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
09:26:13 warnings.warn(
09:26:13running clean
09:26:13Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
09:26:14Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
09:26:1409:26:14python-clean:
09:26:14WARNING: '' not a valid package name; please use only .-separated package names in setup.py
09:26:14/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-622-9dcf70e17e-ice36-b31') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
09:26:14 warnings.warn(
09:26:14running clean
09:26:14Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
09:26:15Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
09:26:15Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
09:26:15Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
09:26:1609:26:16python-clean:
09:26:16WARNING: '' not a valid package name; please use only .-separated package names in setup.py
09:26:16/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-622-9dcf70e17e-ice36-b31') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
09:26:16 warnings.warn(
09:26:16running clean
09:26:16Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
09:26:16Deleting directory /home/omero/workspace/OMERO-build/src/target
09:26:1709:26:17build-scons:
09:26:17Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
09:26:1909:26:19build:
09:26:19No sub-builds to iterate on
09:26:19Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
09:26:19Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
09:26:19Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
09:26:20Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
09:26:2009:26:20tools-init:
09:26:20no-op
09:26:2009:26:20retrieve:
09:26:20:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
09:26:20:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
09:27:5409:27:54prepare:
09:27:54Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
09:27:54Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
09:27:54Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
09:27:54Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
09:27:54Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
09:27:54Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
09:27:54Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
09:27:54Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
09:27:54Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
09:27:54Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
09:27:54Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
09:27:54Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
09:27:54Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
09:27:54Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
09:27:54Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
09:27:5409:27:54pre-compile:
09:27:54Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
09:27:55Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
09:28:03Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
09:28:07Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
09:28:08Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
09:28:1009:28:10compile:
09:28:10no-op
09:28:1009:28:10package:
09:28:10Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
09:28:1709:28:17install:
09:28:17:: delivering :: omero#omero_client;working@652802b07c29 :: 5.6.3-622-9dcf70e17e-ice36-b31 :: integration :: Sun Aug 02 09:26:19 UTC 2026
09:28:17 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
09:28:17:: publishing :: omero#omero_client
09:28:17 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-622-9dcf70e17e-ice36-b31/omero_client-5.6.3-622-9dcf70e17e-ice36-b31.jar
09:28:17 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-622-9dcf70e17e-ice36-b31/omero_client-5.6.3-622-9dcf70e17e-ice36-b31.xml
09:28:18Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
09:28:18Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
09:28:1809:28:18retrieve:
09:28:18:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
09:28:18:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
09:28:19Entering /home/omero/workspace/OMERO-build/src/components/tools...
09:28:1909:28:19dist:
09:28:19Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
09:28:19Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
09:28:19Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
09:28:19Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.10.1.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
09:28:20Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
09:28:20Copying 29 files to /home/omero/workspace/OMERO-build/src/dist
09:28:20Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
09:28:21Entering /home/omero/workspace/OMERO-build/src/components/tests...
09:28:21Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
09:28:2209:28:22copy-licenses:
09:28:22Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
09:28:22Created dir: /home/omero/workspace/OMERO-build/src/dist/share
09:28:22Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
09:28:2209:28:22copy-history:
09:28:22Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
09:28:2209:28:22copy-etc:
09:28:22Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
09:28:23Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
09:28:2309:28:23copy-sql:
09:28:23Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
09:28:3509:28:35copy-server:
09:28:35 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.1.9 won
09:28:4009:28:40copy-client:
09:28:40Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
09:28:44 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.1.9 won
09:28:5809:28:58update-version:
09:28:58Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
09:28:5809:28:58create-workdirs:
09:28:58Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
09:28:58Created dir: /home/omero/workspace/OMERO-build/src/dist/var
09:28:58Created dir: /home/omero/workspace/OMERO-build/src/dist/var/tmp
09:28:5809:28:58copy-luts:
09:28:58Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
09:28:58Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
09:28:5909:28:59test-compile:
09:28:59:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
09:28:59Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
09:29:00Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
09:29:00Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
09:29:00Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
09:29:00Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
09:29:00Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
09:29:01Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
09:29:0109:29:01testng-init:
09:29:01:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
09:29:01:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
09:29:0909:29:09,343 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.16
09:29:0909:29:09,346 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1492c9d - No custom configurators were discovered as a service.
09:29:0909:29:09,346 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1492c9d - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
09:29:0909:29:09,351 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1492c9d - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
09:29:0909:29:09,359 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
09:29:0909:29:09,361 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
09:29:0909:29:09,362 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1492c9d - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 11 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
09:29:0909:29:09,362 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1492c9d - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
09:29:0909:29:09,364 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1492c9d - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
09:29:0909:29:09,366 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
09:29:0909:29:09,367 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
09:29:0909:29:09,369 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@24df8abf - Resource [logback.xml] occurs multiple times on the classpath.
09:29:0909:29:09,369 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@24df8abf - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
09:29:0909:29:09,369 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@24df8abf - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
09:29:0909:29:09,624 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
09:29:0909:29:09,624 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
09:29:0909:29:09,649 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
09:29:0909:29:09,651 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@390d47db - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
09:29:0909:29:09,651 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@390d47db - Please move "immediateFlush" property into the enclosing appender.
09:29:0909:29:09,726 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@390d47db - Setting the "immediateFlush" property of the enclosing appender to true
09:29:0909:29:09,727 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
09:29:0909:29:09,727 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
09:29:0909:29:09,727 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
09:29:0909:29:09,727 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
09:29:0909:29:09,727 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
09:29:0909:29:09,727 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
09:29:0909:29:09,728 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@6aa09c35 - End of configuration.
09:29:0909:29:09,731 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@22457838 - Registering current configuration as safe fallback point
09:29:0909:29:09,731 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1492c9d - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 367 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
09:29:0909:29:09lifecycle.test-compile:
09:29:09Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
09:29:09Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
09:29:10warning: [options] bootstrap class path not set in conjunction with -source 8
09:29:10warning: [options] source value 8 is obsolete and will be removed in a future release
09:29:10warning: [options] target value 8 is obsolete and will be removed in a future release
09:29:10warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
09:29:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
09:29:11import omero.grid.RawAccessRequest;
09:29:11 ^
09:29:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
09:29:12import omero.grid.RawAccessRequest;
09:29:12 ^
09:29:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
09:29:12import omero.grid.RawAccessRequest;
09:29:12 ^
09:29:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
09:29:12import omero.model.ImportJob;
09:29:12 ^
09:29:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
09:29:12import omero.model.ImportJobI;
09:29:12 ^
09:29:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated
09:29:13 IObject link = (IObject) linkClass.newInstance();
09:29:13 ^
09:29:13 where T is a type-variable:
09:29:13 T extends Object declared in class Class
09:29:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
09:29:13 T copy = (T) obj.getClass().newInstance();
09:29:13 ^
09:29:13 where T is a type-variable:
09:29:13 T extends Object declared in class Class
09:29:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
09:29:13 RawAccessRequest raw = new RawAccessRequest();
09:29:13 ^
09:29:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
09:29:13 RawAccessRequest raw = new RawAccessRequest();
09:29:13 ^
09:29:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
09:29:13 raw.repoUuid = legacy.root().getHash().getValue();
09:29:13 ^
09:29:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
09:29:13 raw.command = "rm";
09:29:13 ^
09:29:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
09:29:13 raw.args = Arrays.asList(path);
09:29:13 ^
09:29:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
09:29:13 final IObject link = linkClass.newInstance();
09:29:13 ^
09:29:13 where T is a type-variable:
09:29:13 T extends Object declared in class Class
09:29:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
09:29:13 originalLink.setChild(annotationClass.newInstance());
09:29:13 ^
09:29:13 where T is a type-variable:
09:29:13 T extends Object declared in class Class
09:29:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
09:29:14 RoiResult r = svc.findByImage(id, new RoiOptions());
09:29:14 ^
09:29:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
09:29:14 final RawAccessRequest request = new RawAccessRequest();
09:29:14 ^
09:29:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
09:29:14 final RawAccessRequest request = new RawAccessRequest();
09:29:14 ^
09:29:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
09:29:14 request.repoUuid = repo.root().getHash().getValue();
09:29:14 ^
09:29:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
09:29:14 request.command = "exists";
09:29:14 ^
09:29:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
09:29:14 request.args = Collections.singletonList(dirPath);
09:29:14 ^
09:29:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
09:29:14 final RawAccessRequest request = new RawAccessRequest();
09:29:14 ^
09:29:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
09:29:14 final RawAccessRequest request = new RawAccessRequest();
09:29:14 ^
09:29:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
09:29:14 request.repoUuid = repo.root().getHash().getValue();
09:29:14 ^
09:29:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
09:29:14 request.command = "exists";
09:29:14 ^
09:29:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
09:29:14 request.args = Collections.singletonList(dirName);
09:29:14 ^
09:29:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
09:29:14 final ImportJob importJob = new ImportJobI();
09:29:14 ^
09:29:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
09:29:14 final ImportJob importJob = new ImportJobI();
09:29:14 ^
09:29:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
09:29:14 importJob.setImageName(omero.rtypes.rstring(name));
09:29:14 ^
09:29:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
09:29:14 importJob.setImageDescription(omero.rtypes.rstring(desc));
09:29:14 ^
09:29:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
09:29:14 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
09:29:14 ^
09:29:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
09:29:14 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
09:29:14 ^
09:29:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
09:29:14 final String savedName = sent.getImageName().getValue().toString();
09:29:14 ^
09:29:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
09:29:14 final String savedDesc = sent.getImageDescription().getValue().toString();
09:29:14 ^
09:29:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
09:29:14 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
09:29:14 ^
09:29:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
09:29:14 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
09:29:14 ^
09:29:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
09:29:14 final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
09:29:14 ^
09:29:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
09:29:14 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
09:29:14 ^
09:29:15/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
09:29:15 RoiResult r = svc.findByImage(image.getId().getValue(),
09:29:15 ^
09:29:15/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
09:29:15 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
09:29:15 ^
09:29:15/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
09:29:15 l = svc.getRoiMeasurements(image.getId().getValue(), options);
09:29:15 ^
09:29:15/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
09:29:15 l = svc.getRoiMeasurements(image.getId().getValue(), options);
09:29:15 ^
09:29:15/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
09:29:15 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
09:29:15 ^
09:29:15/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
09:29:15 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
09:29:15 ^
09:29:15/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
09:29:15 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
09:29:15 ^
09:29:15/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
09:29:15 table = svc.getTable(f.getId().getValue());
09:29:15 ^
09:29:15/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
09:29:15 RoiResult r = svc.findByImage(image.getId().getValue(),
09:29:15 ^
09:29:15/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
09:29:15 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
09:29:15 ^
09:29:15/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
09:29:15 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
09:29:15 ^
09:29:15/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
09:29:15 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
09:29:15 ^
09:29:15/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
09:29:15 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
09:29:15 ^
09:29:15/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
09:29:15 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
09:29:15 ^
09:29:15/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
09:29:15 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
09:29:15 ^
09:29:15/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
09:29:15 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
09:29:15 ^
09:29:15/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
09:29:15 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
09:29:15 ^
09:29:15/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Long(long) in Long has been deprecated and marked for removal
09:29:15 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
09:29:15 ^
09:29:15/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
09:29:15 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
09:29:15 ^
09:29:15/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
09:29:15 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
09:29:15 ^
09:29:15/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
09:29:15 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
09:29:15 ^
09:29:15/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
09:29:15 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
09:29:15 ^
09:29:15/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
09:29:15 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
09:29:15 ^
09:29:15/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
09:29:15 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
09:29:15 ^
09:29:15/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
09:29:15 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
09:29:15 ^
09:29:15/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
09:29:15 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
09:29:15 ^
09:29:15/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
09:29:15 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
09:29:15 ^
09:29:15/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
09:29:15 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
09:29:15 ^
09:29:15/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
09:29:15 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
09:29:15 ^
09:29:15/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
09:29:15 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
09:29:15 ^
09:29:15/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
09:29:15 svc.getShapeStatsRestricted(
09:29:15 ^
09:29:15/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
09:29:15 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
09:29:15 ^
09:29:15/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
09:29:15 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
09:29:15 ^
09:29:15/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
09:29:15 request.typesToIgnore = Collections.singletonList("TagAnnotation");
09:29:15 ^
09:29:15/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
09:29:15 request.typesToIgnore = Collections.singletonList("IAnnotationLink");
09:29:15 ^
09:29:15/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
09:29:15 request.typesToIgnore = Collections.singletonList("Annotation");
09:29:15 ^
09:29:15/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
09:29:15 request.typesToIgnore = Collections.singletonList("Annotation");
09:29:15 ^
09:29:15/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
09:29:15 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
09:29:15 ^
09:29:15/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
09:29:15 p2.setRelatedTo(p1);
09:29:15 ^
09:29:15/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
09:29:15 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
09:29:15 ^
09:29:15/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
09:29:15 pixels1.setRelatedTo(pixels2);
09:29:15 ^
09:29:15/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
09:29:15 Pixels pixels = pixels1.getRelatedTo();
09:29:15 ^
09:29:15/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
09:29:15 Assert.assertNull(pixels1.getRelatedTo());
09:29:15 ^
09:29:15/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
09:29:15 pixels1.setRelatedTo(pixels2);
09:29:15 ^
09:29:15/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
09:29:15 Pixels pixels = pixels1.getRelatedTo();
09:29:15 ^
09:29:15/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
09:29:15 Assert.assertNull(pixels1.getRelatedTo());
09:29:15 ^
09:29:15/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
09:29:15 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
09:29:15 ^
09:29:15/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
09:29:15 l = svc.getRoiMeasurements(image.getId().getValue(), options);
09:29:15 ^
09:29:15/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
09:29:15 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
09:29:15 ^
09:29:15/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
09:29:15 l = svc.getRoiMeasurements(image.getId().getValue(), options);
09:29:15 ^
09:29:16Note: Some input files use unchecked or unsafe operations.
09:29:16Note: Recompile with -Xlint:unchecked for details.
09:29:1691 warnings
09:29:16Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_661593243.tmp
09:29:16Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar
09:29:16:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
09:29:16:: delivering :: omero#OmeroJava-test;working@652802b07c29 :: 5.6.3-622-9dcf70e17e-ice36-b31 :: integration :: Sun Aug 02 09:29:00 UTC 2026
09:29:16 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml
09:29:16:: publishing :: omero#OmeroJava-test
09:29:16 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-622-9dcf70e17e-ice36-b31.jar
09:29:16 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-622-9dcf70e17e-ice36-b31.xml
09:29:1609:29:16build-eclipse:
09:29:16No sub-builds to iterate on
09:29:17Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
09:29:1709:29:17retrieve:
09:29:17:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
09:29:17:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
09:29:2109:29:21prepare:
09:29:21Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
09:29:2609:29:26release-clients:
09:29:26Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-622-9dcf70e17e-ice36-b31.zip
09:29:3209:29:32release-zip:
09:29:32Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31.zip
09:29:4309:29:43BUILD SUCCESSFUL
09:29:43Total time: 3 minutes 37 seconds
09:29:43++ '[' -d .git ']'
09:29:43++ python3 ./build.py release-src
09:29:44Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
09:29:4509:29:45release-src-git:
09:29:45Releasing openmicroscopy-5.6.3-622-9dcf70e17e-ice36-b31
09:29:46 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-622-9dcf70e17e-ice36-b31.zip
09:29:46 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-622-9dcf70e17e-ice36-b31-base.zip
09:29:4809:29:48BUILD SUCCESSFUL
09:29:48Total time: 4 seconds
09:29:48++ echo BUILD_NUMBER=31
09:29:48++ echo OMERO_BRANCH=merge_ci
09:29:48++ git_info
09:29:48+++ git rev-parse HEAD
09:29:48++ HEAD=9dcf70e17eb693df3a032f408d3a57fd1a216841
09:29:48++ git log --max-count=1 9dcf70e17eb693df3a032f408d3a57fd1a216841
09:29:48++ env
09:29:48++ sort
09:29:48Archiving artifacts
09:30:07Finished: SUCCESS
