01:17:50Started by upstream project "Trigger" build number 4301:17:50originally caused by:
01:17:50 Started by timer
01:17:50Running as SYSTEM
01:17:50Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
01:17:50The recommended git tool is: NONE
01:17:50No credentials specified
01:17:50 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10
01:17:50Fetching changes from the remote Git repository
01:17:50 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
01:17:50Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git01:17:50 > git --version # timeout=10
01:17:50 > git --version # 'git version 2.52.0'
01:17:50 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
01:17:54 > git rev-parse origin/merge_ci^{commit} # timeout=10
01:17:54Checking out Revision b4465394cd49c4f41d0e771d45a28b163bc891cb (origin/merge_ci)
01:17:54 > git config core.sparsecheckout # timeout=10
01:17:54 > git checkout -f b4465394cd49c4f41d0e771d45a28b163bc891cb # timeout=10
01:17:57Commit message: "Add version.properties to etc/omero.properties"
01:17:57 > git rev-list --no-walk 9dcf70e17eb693df3a032f408d3a57fd1a216841 # timeout=10
01:17:57Cleaning workspace
01:17:57 > git rev-parse --verify HEAD # timeout=10
01:17:57Resetting working tree
01:17:57 > git reset --hard # timeout=10
01:17:57 > git clean -fdx # timeout=10
01:18:29Copied 6 artifacts from "OMERO-python-superbuild-build" build number 2801:18:30[OMERO-build] $ /bin/bash -xe /tmp/jenkins16069354834863716446.sh
01:18:30+ mv omero-scripts/dist/omero_scripts-5.10.1.dev0.tar.gz .
01:18:30+ cd src
01:18:30+ export OMERO_BRANCH=merge_ci
01:18:30+ OMERO_BRANCH=merge_ci
01:18:30+ OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
01:18:30+ rm -rf /home/omero/workspace/OMERO-build/omero-virtualenv
01:18:59+ source /home/omero/settings.env
01:18:59++ OMERO_DB_HOST=pg
01:18:59++ OMERO_DB_USER=postgres
01:18:59++ OMERO_DB_PASS=
01:18:59++ OMERO_ROOT_PASS=omero
01:18:59++ OMERO_DATA_DIR=/OMERO
01:18:59++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
01:18:59+ python3.11 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
01:19:23+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl01:19:24Collecting zeroc-ice==3.6.5
01:19:24 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
01:19:27 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 10.0 MB/s eta 0:00:00
01:19:27Installing collected packages: zeroc-ice
01:19:32Successfully installed zeroc-ice-3.6.5
01:19:3201:19:32[notice] A new release of pip available: 22.3.1 -> 26.2
01:19:32[notice] To update, run: python3.11 -m pip install --upgrade pip
01:19:32+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U 'setuptools<66' omero-py
01:19:33Requirement already satisfied: setuptools<66 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (65.5.1)
01:19:33Collecting setuptools<66
01:19:33 Using cached setuptools-65.7.0-py3-none-any.whl (1.2 MB)
01:19:33Collecting omero-py
01:19:33 Using cached omero_py-5.23.0-py3-none-any.whl (2.8 MB)
01:19:34Collecting appdirs
01:19:34 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
01:19:34Collecting future
01:19:34 Using cached future-1.0.0-py3-none-any.whl (491 kB)
01:19:34Collecting numpy<3,>=2
01:19:34 Using cached numpy-2.4.6-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB)
01:19:35Collecting Pillow>=10.0.0
01:19:35 Using cached pillow-12.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (6.9 MB)
01:19:35Collecting PyYAML
01:19:35 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB)
01:19:35Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (from omero-py) (3.6.5)
01:19:36Collecting requests
01:19:36 Using cached requests-2.34.2-py3-none-any.whl (73 kB)
01:19:36Collecting portalocker
01:19:36 Downloading portalocker-4.1.0-py3-none-any.whl (65 kB)
01:19:36 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 65.9/65.9 kB 1.3 MB/s eta 0:00:00
01:19:36Collecting charset_normalizer<4,>=2
01:19:36 Using cached charset_normalizer-3.4.9-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (221 kB)
01:19:36Collecting idna<4,>=2.5
01:19:36 Using cached idna-3.18-py3-none-any.whl (65 kB)
01:19:37Collecting urllib3<3,>=1.26
01:19:37 Using cached urllib3-2.7.0-py3-none-any.whl (131 kB)
01:19:37Collecting certifi>=2023.5.7
01:19:37 Using cached certifi-2026.7.22-py3-none-any.whl (136 kB)
01:19:37Installing collected packages: appdirs, urllib3, setuptools, PyYAML, portalocker, Pillow, numpy, idna, future, charset_normalizer, certifi, requests, omero-py
01:19:39 Attempting uninstall: setuptools
01:19:39 Found existing installation: setuptools 65.5.1
01:19:39 Uninstalling setuptools-65.5.1:
01:19:40 Successfully uninstalled setuptools-65.5.1
01:20:43Successfully installed Pillow-12.3.0 PyYAML-6.0.3 appdirs-1.4.4 certifi-2026.7.22 charset_normalizer-3.4.9 future-1.0.0 idna-3.18 numpy-2.4.6 omero-py-5.23.0 portalocker-4.1.0 requests-2.34.2 setuptools-65.7.0 urllib3-2.7.0
01:20:4301:20:43[notice] A new release of pip available: 22.3.1 -> 26.2
01:20:43[notice] To update, run: python3.11 -m pip install --upgrade pip
01:20:43+ source /home/omero/workspace/OMERO-build/omero-virtualenv/bin/activate
01:20:43++ deactivate nondestructive
01:20:43++ '[' -n '' ']'
01:20:43++ '[' -n '' ']'
01:20:43++ hash -r
01:20:43++ '[' -n '' ']'
01:20:43++ unset VIRTUAL_ENV
01:20:43++ unset VIRTUAL_ENV_PROMPT
01:20:43++ '[' '!' nondestructive = nondestructive ']'
01:20:43++ VIRTUAL_ENV=/home/omero/workspace/OMERO-build/omero-virtualenv
01:20:43++ export VIRTUAL_ENV
01:20:43++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:20:43++ PATH=/home/omero/workspace/OMERO-build/omero-virtualenv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:20:43++ export PATH
01:20:43++ '[' -n '' ']'
01:20:43++ '[' -z '' ']'
01:20:43++ _OLD_VIRTUAL_PS1=
01:20:43++ PS1='(omero-virtualenv) '
01:20:43++ export PS1
01:20:43++ VIRTUAL_ENV_PROMPT='(omero-virtualenv) '
01:20:43++ export VIRTUAL_ENV_PROMPT
01:20:43++ hash -r
01:20:43+ source docs/hudson/OMERO.sh
01:20:43++ set -e
01:20:43++ set -u
01:20:43++ set -x
01:20:43++ source docs/hudson/functions.sh
01:20:43++ echo Building merge_ci
01:20:43Building merge_ci
01:20:43++ python3 ./build.py build-dev release-all
01:20:44Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
01:20:4501:20:45check-ivy:
01:20:45Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
01:20:45Created dir: /home/omero/workspace/OMERO-build/src/target
01:20:45:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
01:20:45:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:20:4701:20:47build-scons:
01:20:47Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
01:20:49No sub-builds to iterate on
01:20:49Entering /home/omero/workspace/OMERO-build/src/components/tools...
01:20:5001:20:50buildlist:
01:20:50:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
01:20:50:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:20:5001:20:50clean:
01:20:50Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
01:20:50Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
01:20:5101:20:51python-clean:
01:20:51WARNING: '' not a valid package name; please use only .-separated package names in setup.py
01:20:51/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-624-b4465394cd-ice36-b32') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
01:20:51 warnings.warn(
01:20:51running clean
01:20:51Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
01:20:52Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
01:20:5201:20:52python-clean:
01:20:52WARNING: '' not a valid package name; please use only .-separated package names in setup.py
01:20:52/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-624-b4465394cd-ice36-b32') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
01:20:52 warnings.warn(
01:20:52running clean
01:20:52Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
01:20:53Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
01:20:53Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
01:20:53Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
01:20:5401:20:54python-clean:
01:20:54WARNING: '' not a valid package name; please use only .-separated package names in setup.py
01:20:54/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-624-b4465394cd-ice36-b32') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
01:20:54 warnings.warn(
01:20:54running clean
01:20:54Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
01:20:54Deleting directory /home/omero/workspace/OMERO-build/src/target
01:20:5501:20:55build-scons:
01:20:55Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
01:20:5701:20:57build:
01:20:57No sub-builds to iterate on
01:20:57Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
01:20:58Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
01:20:58Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
01:20:59Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
01:20:5901:20:59tools-init:
01:20:59no-op
01:20:5901:20:59retrieve:
01:20:59:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
01:20:59:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:22:2101:22:21prepare:
01:22:21Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
01:22:21Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
01:22:21Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
01:22:21Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
01:22:21Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
01:22:21Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
01:22:21Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
01:22:21Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
01:22:21Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
01:22:21Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
01:22:21Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
01:22:21Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
01:22:21Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
01:22:21Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
01:22:21Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
01:22:2101:22:21pre-compile:
01:22:21Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
01:22:23Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
01:22:33Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
01:22:38Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
01:22:39Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
01:22:4101:22:41compile:
01:22:41no-op
01:22:4201:22:42package:
01:22:42Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
01:22:4601:22:46install:
01:22:46:: delivering :: omero#omero_client;working@652802b07c29 :: 5.6.3-624-b4465394cd-ice36-b32 :: integration :: Mon Aug 03 01:20:58 UTC 2026
01:22:46 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
01:22:46:: publishing :: omero#omero_client
01:22:46 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-624-b4465394cd-ice36-b32/omero_client-5.6.3-624-b4465394cd-ice36-b32.jar
01:22:46 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-624-b4465394cd-ice36-b32/omero_client-5.6.3-624-b4465394cd-ice36-b32.xml
01:22:47Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
01:22:47Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
01:22:4701:22:47retrieve:
01:22:47:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
01:22:47:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:22:48Entering /home/omero/workspace/OMERO-build/src/components/tools...
01:22:4801:22:48dist:
01:22:48Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
01:22:48Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
01:22:48Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
01:22:48Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.10.1.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
01:22:49Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
01:22:49Copying 29 files to /home/omero/workspace/OMERO-build/src/dist
01:22:49Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
01:22:50Entering /home/omero/workspace/OMERO-build/src/components/tests...
01:22:50Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
01:22:5101:22:51copy-licenses:
01:22:51Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
01:22:51Created dir: /home/omero/workspace/OMERO-build/src/dist/share
01:22:51Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
01:22:5201:22:52copy-history:
01:22:52Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
01:22:5201:22:52copy-etc:
01:22:52Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
01:22:52Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
01:22:5301:22:53copy-sql:
01:22:53Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
01:23:0501:23:05copy-server:
01:23:05 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.1.9 won
01:23:1001:23:10copy-client:
01:23:10Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
01:23:14 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.1.9 won
01:23:1901:23:19update-version:
01:23:19Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
01:23:1901:23:19create-workdirs:
01:23:19Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
01:23:19Created dir: /home/omero/workspace/OMERO-build/src/dist/var
01:23:19Created dir: /home/omero/workspace/OMERO-build/src/dist/var/tmp
01:23:1901:23:19copy-luts:
01:23:19Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
01:23:19Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
01:23:2001:23:20test-compile:
01:23:20:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:23:20Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
01:23:21Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
01:23:21Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
01:23:21Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
01:23:21Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
01:23:22Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
01:23:22Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
01:23:2201:23:22testng-init:
01:23:22:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
01:23:22:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:23:3101:23:31,085 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.16
01:23:3101:23:31,088 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1492c9d - No custom configurators were discovered as a service.
01:23:3101:23:31,088 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1492c9d - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
01:23:3101:23:31,091 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1492c9d - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
01:23:3101:23:31,094 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
01:23:3101:23:31,096 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
01:23:3101:23:31,097 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1492c9d - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 6 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
01:23:3101:23:31,097 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1492c9d - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
01:23:3101:23:31,099 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1492c9d - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
01:23:3101:23:31,102 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
01:23:3101:23:31,103 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
01:23:3101:23:31,105 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@24df8abf - Resource [logback.xml] occurs multiple times on the classpath.
01:23:3101:23:31,105 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@24df8abf - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
01:23:3101:23:31,105 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@24df8abf - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
01:23:3101:23:31,337 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
01:23:3101:23:31,337 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
01:23:3101:23:31,360 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
01:23:3101:23:31,363 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@390d47db - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
01:23:3101:23:31,363 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@390d47db - Please move "immediateFlush" property into the enclosing appender.
01:23:3101:23:31,437 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@390d47db - Setting the "immediateFlush" property of the enclosing appender to true
01:23:3101:23:31,438 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
01:23:3101:23:31,438 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
01:23:3101:23:31,438 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
01:23:3101:23:31,438 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
01:23:3101:23:31,438 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
01:23:3101:23:31,438 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
01:23:3101:23:31,440 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@6aa09c35 - End of configuration.
01:23:3101:23:31,442 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@22457838 - Registering current configuration as safe fallback point
01:23:3101:23:31,442 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1492c9d - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 343 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
01:23:3101:23:31lifecycle.test-compile:
01:23:31Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
01:23:31Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
01:23:31warning: [options] bootstrap class path not set in conjunction with -source 8
01:23:31warning: [options] source value 8 is obsolete and will be removed in a future release
01:23:31warning: [options] target value 8 is obsolete and will be removed in a future release
01:23:31warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
01:23:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:23:33import omero.grid.RawAccessRequest;
01:23:33 ^
01:23:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:23:34import omero.grid.RawAccessRequest;
01:23:34 ^
01:23:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:23:34import omero.grid.RawAccessRequest;
01:23:34 ^
01:23:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
01:23:34import omero.model.ImportJob;
01:23:34 ^
01:23:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
01:23:34import omero.model.ImportJobI;
01:23:34 ^
01:23:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated
01:23:35 IObject link = (IObject) linkClass.newInstance();
01:23:35 ^
01:23:35 where T is a type-variable:
01:23:35 T extends Object declared in class Class
01:23:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
01:23:35 T copy = (T) obj.getClass().newInstance();
01:23:35 ^
01:23:35 where T is a type-variable:
01:23:35 T extends Object declared in class Class
01:23:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:23:35 RawAccessRequest raw = new RawAccessRequest();
01:23:35 ^
01:23:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:23:35 RawAccessRequest raw = new RawAccessRequest();
01:23:35 ^
01:23:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
01:23:35 raw.repoUuid = legacy.root().getHash().getValue();
01:23:35 ^
01:23:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
01:23:35 raw.command = "rm";
01:23:35 ^
01:23:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
01:23:35 raw.args = Arrays.asList(path);
01:23:35 ^
01:23:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
01:23:35 final IObject link = linkClass.newInstance();
01:23:35 ^
01:23:35 where T is a type-variable:
01:23:35 T extends Object declared in class Class
01:23:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
01:23:35 originalLink.setChild(annotationClass.newInstance());
01:23:35 ^
01:23:35 where T is a type-variable:
01:23:35 T extends Object declared in class Class
01:23:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
01:23:36 RoiResult r = svc.findByImage(id, new RoiOptions());
01:23:36 ^
01:23:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:23:36 final RawAccessRequest request = new RawAccessRequest();
01:23:36 ^
01:23:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:23:36 final RawAccessRequest request = new RawAccessRequest();
01:23:36 ^
01:23:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
01:23:36 request.repoUuid = repo.root().getHash().getValue();
01:23:36 ^
01:23:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
01:23:36 request.command = "exists";
01:23:36 ^
01:23:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
01:23:36 request.args = Collections.singletonList(dirPath);
01:23:36 ^
01:23:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:23:36 final RawAccessRequest request = new RawAccessRequest();
01:23:36 ^
01:23:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:23:36 final RawAccessRequest request = new RawAccessRequest();
01:23:36 ^
01:23:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
01:23:36 request.repoUuid = repo.root().getHash().getValue();
01:23:36 ^
01:23:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
01:23:36 request.command = "exists";
01:23:36 ^
01:23:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
01:23:36 request.args = Collections.singletonList(dirName);
01:23:36 ^
01:23:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
01:23:36 final ImportJob importJob = new ImportJobI();
01:23:36 ^
01:23:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
01:23:36 final ImportJob importJob = new ImportJobI();
01:23:36 ^
01:23:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
01:23:36 importJob.setImageName(omero.rtypes.rstring(name));
01:23:36 ^
01:23:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
01:23:36 importJob.setImageDescription(omero.rtypes.rstring(desc));
01:23:36 ^
01:23:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
01:23:36 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
01:23:36 ^
01:23:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
01:23:36 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
01:23:36 ^
01:23:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
01:23:36 final String savedName = sent.getImageName().getValue().toString();
01:23:36 ^
01:23:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
01:23:36 final String savedDesc = sent.getImageDescription().getValue().toString();
01:23:36 ^
01:23:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
01:23:36 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
01:23:36 ^
01:23:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
01:23:36 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
01:23:36 ^
01:23:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
01:23:36 final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
01:23:36 ^
01:23:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
01:23:36 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
01:23:36 ^
01:23:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
01:23:37 RoiResult r = svc.findByImage(image.getId().getValue(),
01:23:37 ^
01:23:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:23:37 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
01:23:37 ^
01:23:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:23:37 l = svc.getRoiMeasurements(image.getId().getValue(), options);
01:23:37 ^
01:23:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:23:37 l = svc.getRoiMeasurements(image.getId().getValue(), options);
01:23:37 ^
01:23:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:23:37 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
01:23:37 ^
01:23:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
01:23:37 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
01:23:37 ^
01:23:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:23:37 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
01:23:37 ^
01:23:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
01:23:37 table = svc.getTable(f.getId().getValue());
01:23:37 ^
01:23:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
01:23:37 RoiResult r = svc.findByImage(image.getId().getValue(),
01:23:37 ^
01:23:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
01:23:37 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
01:23:37 ^
01:23:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
01:23:37 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
01:23:37 ^
01:23:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
01:23:37 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
01:23:37 ^
01:23:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
01:23:37 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
01:23:37 ^
01:23:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:23:37 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
01:23:37 ^
01:23:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:23:37 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
01:23:37 ^
01:23:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:23:37 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
01:23:37 ^
01:23:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:23:37 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
01:23:37 ^
01:23:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Long(long) in Long has been deprecated and marked for removal
01:23:37 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
01:23:37 ^
01:23:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:23:37 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
01:23:37 ^
01:23:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:23:37 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
01:23:37 ^
01:23:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:23:37 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
01:23:37 ^
01:23:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:23:37 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
01:23:37 ^
01:23:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:23:37 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
01:23:37 ^
01:23:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:23:37 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
01:23:37 ^
01:23:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:23:37 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
01:23:37 ^
01:23:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:23:37 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
01:23:37 ^
01:23:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:23:37 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
01:23:37 ^
01:23:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:23:37 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
01:23:37 ^
01:23:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:23:37 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
01:23:37 ^
01:23:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:23:37 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
01:23:37 ^
01:23:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
01:23:37 svc.getShapeStatsRestricted(
01:23:37 ^
01:23:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
01:23:37 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
01:23:37 ^
01:23:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
01:23:37 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
01:23:37 ^
01:23:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
01:23:37 request.typesToIgnore = Collections.singletonList("TagAnnotation");
01:23:37 ^
01:23:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
01:23:37 request.typesToIgnore = Collections.singletonList("IAnnotationLink");
01:23:37 ^
01:23:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
01:23:37 request.typesToIgnore = Collections.singletonList("Annotation");
01:23:37 ^
01:23:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
01:23:37 request.typesToIgnore = Collections.singletonList("Annotation");
01:23:37 ^
01:23:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
01:23:37 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
01:23:37 ^
01:23:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
01:23:37 p2.setRelatedTo(p1);
01:23:37 ^
01:23:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
01:23:37 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
01:23:37 ^
01:23:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
01:23:37 pixels1.setRelatedTo(pixels2);
01:23:37 ^
01:23:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
01:23:37 Pixels pixels = pixels1.getRelatedTo();
01:23:37 ^
01:23:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
01:23:37 Assert.assertNull(pixels1.getRelatedTo());
01:23:37 ^
01:23:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
01:23:37 pixels1.setRelatedTo(pixels2);
01:23:37 ^
01:23:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
01:23:37 Pixels pixels = pixels1.getRelatedTo();
01:23:37 ^
01:23:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
01:23:37 Assert.assertNull(pixels1.getRelatedTo());
01:23:37 ^
01:23:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:23:38 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
01:23:38 ^
01:23:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:23:38 l = svc.getRoiMeasurements(image.getId().getValue(), options);
01:23:38 ^
01:23:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:23:38 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
01:23:38 ^
01:23:38/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:23:38 l = svc.getRoiMeasurements(image.getId().getValue(), options);
01:23:38 ^
01:23:38Note: Some input files use unchecked or unsafe operations.
01:23:38Note: Recompile with -Xlint:unchecked for details.
01:23:3891 warnings
01:23:38Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_2139422372.tmp
01:23:38Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar
01:23:38:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:23:38:: delivering :: omero#OmeroJava-test;working@652802b07c29 :: 5.6.3-624-b4465394cd-ice36-b32 :: integration :: Mon Aug 03 01:23:22 UTC 2026
01:23:38 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml
01:23:38:: publishing :: omero#OmeroJava-test
01:23:38 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-624-b4465394cd-ice36-b32.jar
01:23:38 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-624-b4465394cd-ice36-b32.xml
01:23:3901:23:39build-eclipse:
01:23:39No sub-builds to iterate on
01:23:39Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
01:23:3901:23:39retrieve:
01:23:39:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
01:23:39:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:23:4401:23:44prepare:
01:23:44Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
01:23:4901:23:49release-clients:
01:23:49Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-624-b4465394cd-ice36-b32.zip
01:23:5501:23:55release-zip:
01:23:55Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-624-b4465394cd-ice36-b32.zip
01:24:0701:24:07BUILD SUCCESSFUL
01:24:07Total time: 3 minutes 23 seconds
01:24:07++ '[' -d .git ']'
01:24:07++ python3 ./build.py release-src
01:24:08Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
01:24:0901:24:09release-src-git:
01:24:09Releasing openmicroscopy-5.6.3-624-b4465394cd-ice36-b32
01:24:11 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-624-b4465394cd-ice36-b32.zip
01:24:11 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-624-b4465394cd-ice36-b32-base.zip
01:24:1201:24:12BUILD SUCCESSFUL
01:24:12Total time: 4 seconds
01:24:12++ echo BUILD_NUMBER=32
01:24:12++ echo OMERO_BRANCH=merge_ci
01:24:12++ git_info
01:24:12+++ git rev-parse HEAD
01:24:12++ HEAD=b4465394cd49c4f41d0e771d45a28b163bc891cb
01:24:12++ git log --max-count=1 b4465394cd49c4f41d0e771d45a28b163bc891cb
01:24:12++ env
01:24:12++ sort
01:24:12Archiving artifacts
01:24:30Finished: SUCCESS
